Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 0.0e+00 1105.1 541 100.0
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 3.1e-301 1037.7 541 94.6
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 4.1e-277 957.6 541 87.1
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 1.3e-275 952.6 541 86.7
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 8.5e-275 949.9 541 86.5
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 8.0e-273 943.3 541 86.7
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 5.2e-248 860.9 504 85.9
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 4.3e-202 708.4 537 67.8
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 4.0e-192 675.2 545 65.5
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 5.5e-165 585.1 565 57.9
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 5.5e-165 585.1 565 57.9
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 7.9e-164 581.3 564 56.6
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 2.4e-160 569.7 544 57.2
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.7e-153 547.0 552 53.1
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 9.4e-149 531.2 569 55.0
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 2.9e-142 509.6 554 51.6
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 1.5e-141 507.3 571 50.6
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 3.2e-141 506.1 547 52.7
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 6.1e-140 501.9 567 51.3
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 1.4e-139 500.7 537 50.7
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 4.4e-138 495.7 539 52.9
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 1.7e-137 493.8 561 49.6
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 2.2e-137 493.4 562 50.7
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 6.3e-137 491.9 548 50.7
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 1.1e-136 491.1 534 52.2
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 1.4e-136 490.7 544 50.4
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 1.6e-135 487.3 543 49.2
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 5.9e-135 485.3 555 51.0
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 3.8e-134 482.6 534 51.5
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.5e-133 480.7 555 49.4
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 1.2e-132 477.6 564 47.9
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 1.2e-132 477.6 537 50.7
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 3.6e-132 476.1 554 49.5
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 4.0e-131 472.6 546 50.2
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 6.8e-131 471.9 570 48.8
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 2.0e-130 470.3 549 49.0
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 2.6e-130 469.9 393 62.1
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 2.2e-129 466.8 532 49.2
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 4.9e-129 465.7 557 48.3
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 5.4e-128 462.2 526 49.0
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 7.0e-128 461.8 541 49.7
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.2e-127 461.1 540 49.6
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 4.6e-127 459.1 531 49.7
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 8.6e-126 454.9 548 48.7
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 1.2e-124 451.1 420 56.9
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.4e-123 447.6 532 50.4
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 1.8e-123 447.2 548 47.8
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 5.2e-123 445.7 551 47.0
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 8.9e-123 444.9 567 46.2
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 1.2e-122 444.5 546 48.9
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 1.5e-122 444.1 524 49.4
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 3.4e-122 443.0 549 46.8
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 3.4e-122 443.0 549 48.3
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 1.3e-121 441.0 530 47.2
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.7e-121 440.7 539 49.2
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 1.7e-121 440.7 539 49.5
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 6.4e-121 438.7 518 48.3
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 1.9e-120 437.2 544 46.5
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 2.4e-120 436.8 532 47.2
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 7.0e-120 435.3 521 48.6
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 6.0e-119 432.2 536 47.8
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.0e-118 431.4 555 47.0
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.7e-118 430.6 542 48.5
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 3.9e-118 429.5 529 46.7
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 8.6e-118 428.3 514 48.4
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 1.1e-117 427.9 592 44.6
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.1e-117 427.9 524 47.3
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 4.3e-117 426.0 429 52.4
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 7.3e-117 425.2 446 54.0
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 1.6e-116 424.1 533 46.0
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 2.8e-116 423.3 543 44.9
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 1.5e-114 417.5 542 46.5
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 9.9e-114 414.8 513 47.8
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 1.3e-113 414.5 512 45.7
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 5.4e-112 409.1 530 45.7
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.3e-110 404.4 513 46.4
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 5.1e-110 402.5 532 44.2
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 7.3e-109 398.7 540 43.5
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 1.4e-107 394.4 544 44.1
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 2.6e-106 390.2 530 44.2
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 3.8e-105 386.3 512 44.5
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.4e-104 384.4 550 41.3
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 7.1e-104 382.1 523 43.6
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 2.1e-103 380.6 517 43.1
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 8.7e-102 375.2 517 44.3
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 5.6e-101 372.5 549 42.1
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.3e-97 361.3 524 41.2
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.2e-97 360.5 492 45.1
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 6.4e-97 359.0 527 42.3
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 4.2e-96 356.3 362 55.5
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 2.1e-95 354.0 542 41.0
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 1.5e-93 347.8 545 40.2
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 1.1e-91 341.7 553 41.2
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 2.4e-91 340.5 523 38.8
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 4.0e-91 339.7 522 40.6
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 2.9e-89 333.6 524 40.1
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 6.4e-89 332.4 324 55.6
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 3.2e-88 330.1 517 38.1
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 9.3e-88 328.6 540 38.7
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 1.0e-86 325.1 411 44.8
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.3e-86 324.7 427 45.2
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.8e-86 324.3 535 40.4
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.9e-85 320.9 317 54.6
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 2.5e-85 320.5 522 38.9
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 6.9e-83 312.4 549 38.3
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 1.5e-82 311.2 305 54.8
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.6e-82 310.5 560 35.9
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 5.8e-82 309.3 564 38.3
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 3.8e-81 306.6 560 38.0
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 4.9e-81 306.2 561 38.0
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 3.2e-80 303.5 560 37.9
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 5.5e-80 302.8 552 35.7
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 5.6e-77 292.7 507 38.9
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 3.1e-75 287.0 326 48.8
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 3.8e-73 280.0 514 35.0
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 3.5e-71 273.5 407 42.3
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 9.7e-69 265.4 508 36.2
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 2.4e-67 260.8 381 43.0
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 2.0e-66 257.7 251 56.2
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.6e-58 230.7 299 45.5
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 2.6e-58 230.7 168 66.7
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 8.5e-57 225.7 620 29.4
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.6e-55 221.5 593 28.0
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 3.9e-54 216.9 556 29.7
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 5.3e-51 206.5 498 32.5
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 1.9e-48 198.0 189 55.6
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.3e-45 187.2 229 48.0
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 7.2e-40 169.5 253 39.5
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 1.2e-39 168.7 238 42.4
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 1.5e-37 161.8 539 28.9
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 1.3e-36 158.7 147 55.8
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.7e-34 151.0 553 25.3
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 2.5e-32 144.4 169 46.2
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.2e-28 131.3 249 36.5
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 1.4e-27 128.6 205 39.5
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 3.3e-24 117.5 236 36.4
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 2.1e-23 114.8 148 43.9
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.4e-19 101.3 193 32.1
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 9.2e-19 99.4 198 32.3
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 6.6e-17 93.2 373 24.9
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 3.3e-16 90.9 118 42.4
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 6.1e-15 86.7 154 37.7
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 3.0e-14 84.3 112 40.2
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 9.8e-13 79.3 76 53.9
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.7e-10 71.2 239 30.5
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.5e-10 70.9 82 51.2
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 1.3e-09 68.9 57 52.6
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 1.3e-09 68.9 116 32.8
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.9e-08 65.1 71 47.9
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 4.3e-08 63.9 44 70.5
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 4.3e-08 63.9 174 30.5
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 9.5e-08 62.8 320 22.8
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 8.0e-07 59.7 149 31.5
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 5.2e-06 57.0 115 36.5


User provided reference genes

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