Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1645.9 810 100.0
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1561.2 811 93.8
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1553.1 815 93.3
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1544.3 815 93.0
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1543.9 815 92.9
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1515.4 810 91.0
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1501.1 810 90.1
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1486.9 810 89.6
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1482.2 811 89.9
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1407.9 815 83.9
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1407.5 814 83.8
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1399.0 810 83.1
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1399.0 811 82.5
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1399.0 808 83.9
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1397.5 811 83.2
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1394.4 810 83.5
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1394.4 811 83.7
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1385.5 809 82.8
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1384.8 807 82.9
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1374.0 813 82.5
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1374.0 813 82.7
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1373.2 809 81.8
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1372.1 813 82.4
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1370.5 813 81.9
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1370.5 809 82.6
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1368.2 818 81.7
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1366.3 809 81.1
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1365.5 810 81.5
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1364.0 817 80.9
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1363.6 813 82.0
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1363.6 807 82.4
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1359.0 809 80.8
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1359.0 816 79.9
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1357.8 810 81.0
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1357.0 805 81.2
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1354.3 804 81.1
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1354.3 816 80.1
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1353.2 812 80.5
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1352.8 811 81.0
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1350.9 810 81.4
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1346.3 807 81.0
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1344.7 816 80.0
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1340.9 890 74.5
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1337.8 808 80.0
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1333.5 810 79.1
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1332.0 832 79.3
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1330.9 810 79.0
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1330.5 812 79.7
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1329.3 810 79.0
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1325.1 810 79.0
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1320.4 820 78.0
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1313.1 808 79.0
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1301.6 807 77.3
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1299.3 796 77.9
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1293.1 812 77.5
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1292.3 806 77.2
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1291.6 814 76.8
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1288.9 808 76.2
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1288.1 806 76.4
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1288.1 806 76.4
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1286.9 807 76.8
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1286.6 806 76.4
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1286.6 806 76.4
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1286.6 806 76.6
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1285.8 805 76.9
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1285.4 805 77.0
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1285.0 807 77.1
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1284.6 807 76.3
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1283.5 807 76.2
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1280.4 806 76.6
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1278.1 807 76.1
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1273.5 806 75.8
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1270.0 785 79.0
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1269.2 808 76.0
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1268.1 806 75.6
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1260.0 818 75.1
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1260.0 807 75.5
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1259.2 807 75.2
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1256.5 812 76.0
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1256.1 807 75.1
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1255.4 807 75.2
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1252.7 812 75.1
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1252.3 810 75.1
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1250.7 862 71.0
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1248.4 814 74.9
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1241.9 816 73.8
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1238.8 808 73.5
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1234.6 801 74.3
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1233.8 807 73.5
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1232.2 860 69.7
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1229.5 809 73.7
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1229.5 810 73.5
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1221.1 813 75.9
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1208.7 869 68.8
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1208.7 808 70.9
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1206.8 811 72.1
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1199.1 967 64.7
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1195.6 812 73.8
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1195.6 765 75.8
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1191.8 826 72.0
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1184.1 912 66.4
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1183.3 808 72.5
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1182.2 812 70.3
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1179.9 808 71.3
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1177.9 810 69.6
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1158.7 781 72.0
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1154.8 963 63.1
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1143.6 807 69.9
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1105.1 815 65.3
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1100.9 812 70.1
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 0.0e+00 1096.6 821 65.3
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1075.8 808 66.8
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 3.4e-296 1021.5 800 61.5
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 1.0e-292 1010.0 606 80.5
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 2.7e-277 958.7 805 60.9
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 2.9e-250 869.0 784 60.3
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 1.1e-193 681.0 381 84.3
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 2.9e-186 656.4 857 43.2
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 2.5e-169 600.1 831 41.4
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 2.4e-156 557.0 808 42.5
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 1.1e-148 531.6 944 34.3
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 1.5e-142 511.1 858 36.8
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 6.2e-120 436.0 417 54.2
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 3.1e-119 433.7 320 66.2
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 1.6e-115 421.4 362 63.5
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 3.2e-108 397.1 248 73.8
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 2.5e-84 317.8 237 68.8
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 3.1e-71 274.2 196 70.4
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 9.4e-68 262.7 173 75.1
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 1.4e-60 238.8 310 45.8
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 7.0e-47 193.4 191 57.6
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 3.5e-46 191.0 141 72.3
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 3.4e-41 174.5 103 80.6
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 4.5e-38 164.1 90 80.0
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 1.1e-36 159.5 269 40.5
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 6.1e-35 153.7 97 71.1
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 1.5e-33 149.1 102 67.6
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 1.1e-31 142.9 121 63.6
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 2.0e-30 138.7 182 47.3
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 5.0e-29 134.0 94 72.3
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 6.6e-29 133.7 118 59.3
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 1.0e-26 126.3 190 41.1
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 1.5e-25 122.5 116 49.1
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.7e-24 119.0 80 73.8
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 3.2e-23 114.8 172 41.3
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 2.0e-22 112.1 261 32.2
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 5.9e-22 110.5 69 79.7
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 1.5e-20 105.9 109 53.2
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 4.3e-20 104.4 73 68.5
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 1.4e-18 99.4 59 81.4
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 2.3e-18 98.6 156 45.5
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 5.2e-18 97.4 68 73.5
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 9.8e-17 93.2 50 80.0
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 3.5e-14 84.7 42 85.7
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 1.5e-12 79.3 51 78.4
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 1.6e-11 75.9 73 58.9
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 1.1e-10 73.2 439 22.1
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 1.4e-10 72.8 129 37.2
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 5.2e-10 70.9 59 52.5
PGR044G0522 Punica granatum HOM05D000344 ORTHO05D003478 1.5e-09 69.3 449 22.0
GSVIVG01035988001 Vitis vinifera HOM05D000344 ORTHO05D003478 4.4e-09 67.8 445 20.4
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 5.8e-09 67.4 57 63.2
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 9.9e-09 66.6 57 63.2
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 9.9e-09 66.6 57 63.2
Gorai.002G149500 Gossypium raimondii HOM05D003868 ORTHO05D017991 3.7e-08 64.7 57 59.6
Gohir.D05G317650 Gossypium hirsutum HOM05D003868 ORTHO05D017991 4.9e-08 64.3 54 64.8
Gohir.A09G086698 Gossypium hirsutum HOM05D003868 ORTHO05D017991 6.4e-08 63.9 54 64.8
Gohir.D03G046101 Gossypium hirsutum HOM05D003868 ORTHO05D017991 6.4e-08 63.9 54 64.8
Gohir.D05G358720 Gossypium hirsutum HOM05D003868 ORTHO05D017991 6.4e-08 63.9 54 64.8
Gohir.D13G088850 Gossypium hirsutum HOM05D003868 ORTHO05D017991 6.4e-08 63.9 54 64.8
Nn8g40042 Nelumbo nucifera HOM05D004364 ORTHO05D006299 2.4e-07 62.0 34 85.3
Nitab4.5_0000406g0080 Nicotiana tabacum HOM05D000344 ORTHO05D003478 9.2e-07 60.1 443 19.6
Sopen07g003630 Solanum pennellii HOM05D000344 ORTHO05D003478 3.5e-06 58.2 374 21.1
MBI14_g31379_MAGBIO Magnolia biondii HOM05D000344 ORTHO05D003478 6.0e-06 57.4 426 20.9
MCO15G019 Micromonas commoda HOM05D002714 ORTHO05D020415 6.0e-06 57.4 559 20.4
DCAR_014905 Daucus carota HOM05D000344 ORTHO05D003478 7.8e-06 57.0 355 21.1


User provided reference genes

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