Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 0.0e+00 1349.7 724 100.0
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 0.0e+00 1226.8 719 89.0
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 0.0e+00 1211.1 725 89.5
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 0.0e+00 1210.3 725 89.4
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 0.0e+00 1192.6 724 88.5
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 0.0e+00 1118.2 723 82.7
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 0.0e+00 1111.3 726 79.5
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 0.0e+00 1088.2 725 80.8
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 0.0e+00 1086.6 728 79.1
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 0.0e+00 1083.6 732 78.4
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 0.0e+00 1081.6 779 74.2
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 0.0e+00 1077.0 727 79.9
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 0.0e+00 1075.8 724 79.8
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 2.0e-311 1072.0 730 77.5
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 1.3e-310 1069.3 728 78.3
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 1.7e-310 1068.9 730 77.8
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 1.4e-309 1065.8 716 78.4
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 3.2e-309 1064.7 731 78.1
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 5.4e-309 1063.9 694 79.4
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 1.5e-306 1055.8 732 76.0
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 2.5e-306 1055.0 731 77.4
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 5.4e-301 1037.3 717 76.0
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 1.6e-300 1035.8 736 74.9
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 2.1e-300 1035.4 749 76.2
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 4.6e-300 1034.2 731 76.5
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 6.6e-299 1030.4 715 77.5
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 2.5e-298 1028.5 735 75.4
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 4.3e-298 1027.7 720 75.8
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 1.1e-296 1023.1 724 75.4
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 4.0e-296 1021.1 718 75.2
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 6.9e-296 1020.4 724 75.1
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 2.6e-295 1018.5 727 74.8
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 4.4e-295 1017.7 723 74.4
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 1.4e-293 1012.7 716 75.1
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.6e-292 1009.2 730 79.0
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 2.1e-292 1008.8 725 73.4
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 7.8e-292 1006.9 730 74.2
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 3.0e-291 1005.0 726 72.2
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 5.1e-291 1004.2 720 75.3
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 6.6e-291 1003.8 730 74.0
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 1.1e-290 1003.0 734 72.6
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 1.9e-290 1002.3 704 76.3
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 4.3e-290 1001.1 715 74.1
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 4.3e-290 1001.1 684 78.5
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 2.1e-289 998.8 724 74.0
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 3.6e-289 998.0 732 73.2
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 1.1e-288 996.5 802 70.8
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 1.4e-288 996.1 735 72.9
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 1.1e-285 986.5 742 71.4
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 2.4e-285 985.3 625 80.8
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 4.2e-285 984.6 710 73.7
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 1.6e-284 982.6 721 73.9
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 1.6e-284 982.6 743 71.3
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 2.7e-284 981.9 763 69.3
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 4.6e-284 981.1 725 73.4
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 7.9e-284 980.3 754 70.0
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 2.5e-282 975.3 607 81.9
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 3.3e-282 974.9 721 72.4
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 9.6e-282 973.4 722 72.9
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 1.6e-281 972.6 722 71.9
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 3.7e-281 971.5 710 74.6
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 1.8e-280 969.1 729 72.0
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 6.9e-280 967.2 715 72.7
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 4.5e-279 964.5 727 73.0
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 4.9e-278 961.1 722 72.3
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 1.4e-277 959.5 721 72.1
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 9.3e-277 956.8 668 76.2
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 4.6e-276 954.5 703 73.5
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 2.5e-274 948.7 710 70.1
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 7.4e-274 947.2 580 81.4
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 1.6e-273 946.0 726 68.5
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 2.1e-273 945.7 729 71.1
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 4.8e-273 944.5 729 71.3
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 6.2e-273 944.1 647 76.5
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 5.3e-272 941.0 649 76.1
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 2.0e-271 939.1 733 71.8
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 4.5e-271 937.9 671 74.1
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 4.5e-271 937.9 750 68.7
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 1.3e-270 936.4 722 67.3
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 1.9e-269 932.6 667 73.3
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 2.8e-265 918.7 523 84.3
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 1.4e-264 916.4 639 77.3
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 2.2e-262 909.1 689 69.2
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 2.2e-262 909.1 721 64.9
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 1.6e-260 902.9 739 69.4
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 1.1e-258 896.7 621 76.3
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 4.3e-258 894.8 727 64.9
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 8.2e-257 890.6 504 85.3
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 1.5e-255 886.3 717 66.4
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 1.4e-253 879.8 724 68.0
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 5.5e-253 877.9 744 67.1
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 1.5e-250 869.8 656 68.9
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 6.3e-241 837.8 796 58.8
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 5.3e-240 834.7 470 85.7
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.7e-230 803.1 626 70.9
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 5.2e-227 791.6 614 66.1
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 1.2e-218 763.8 711 58.5
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 1.2e-215 753.8 566 65.9
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 2.3e-214 749.6 727 57.8
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 2.1e-199 699.9 506 67.4
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 4.4e-194 682.2 409 79.7
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 2.1e-183 646.7 344 88.1
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 3.5e-183 646.0 693 57.6
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 3.1e-179 632.9 549 57.6
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 2.6e-170 603.2 550 65.1
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 2.6e-170 603.2 521 56.8
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 9.3e-168 594.7 470 60.4
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.2e-159 567.8 540 63.5
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 4.6e-159 565.8 360 76.9
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 1.0e-134 485.0 502 50.6
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 9.7e-125 451.8 530 46.6
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 1.7e-124 451.1 492 53.7
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 4.8e-116 422.9 255 75.7
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 5.7e-109 399.4 388 63.7
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 4.5e-106 389.8 729 36.9
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 9.2e-99 365.5 517 38.9
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 2.7e-98 364.0 214 83.2
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 2.7e-90 337.4 176 90.9
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 4.1e-83 313.5 263 63.9
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 1.4e-75 288.5 362 55.0
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 2.3e-65 254.6 157 76.4
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.0e-57 229.2 172 65.7
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.1e-56 225.7 309 46.6
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 3.5e-50 204.1 243 58.0
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 1.3e-49 202.2 242 57.9
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 4.6e-42 177.2 101 81.2
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 8.5e-36 156.4 295 42.0
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.9e-32 145.2 95 77.9
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 2.0e-29 135.2 223 51.6
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 4.4e-24 117.5 76 78.9
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 1.4e-19 102.4 120 48.3
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 1.1e-16 92.8 196 48.5
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 8.5e-12 76.6 153 38.6
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.9e-11 75.5 153 38.6
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 9.4e-11 73.2 153 37.9
Sopen00g012230 Solanum pennellii HOM05D005363 ORTHO05D006607 4.0e-09 67.8 78 62.8
GSVIVG01001483001 Vitis vinifera HOM05D005363 ORTHO05D006607 9.7e-08 63.2 75 49.3
arahy.Tifrunner.gnm1.ann1.9SD0MH Arachis hypogaea HOM05D005363 ORTHO05D015967 2.8e-07 61.6 50 56.0
GSVIVG01001498001 Vitis vinifera HOM05D005363 ORTHO05D438841 9.1e-06 56.6 106 39.6


User provided reference genes

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