Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0012831 Rosa chinensis HOM05D002606 ORTHO05D003016 1.5e-201 706.1 383 100.0
FvH4_3g06460 Fragaria vesca HOM05D002606 ORTHO05D003016 6.4e-160 567.8 395 83.8
FAN21G3713 Fragaria x ananassa HOM05D002606 ORTHO05D003016 8.4e-160 567.4 380 85.0
FAN11G1742 Fragaria x ananassa HOM05D002606 ORTHO05D003016 2.1e-158 562.8 401 82.3
FAN16G3491 Fragaria x ananassa HOM05D002606 ORTHO05D003016 9.6e-156 553.9 396 81.8
FAN25G0150 Fragaria x ananassa HOM05D002606 ORTHO05D003016 1.5e-153 546.6 401 78.3
Prupe.4G072200 Prunus persica HOM05D002606 ORTHO05D003016 4.2e-119 432.2 385 64.2
MD10G1269500 Malus domestica HOM05D002606 ORTHO05D003016 8.2e-115 417.9 384 63.0
Cfa001058 Carpinus fangiana HOM05D002606 ORTHO05D003016 2.0e-84 317.0 387 50.9
QL05p052775 Quercus lobata HOM05D002606 ORTHO05D003016 6.0e-73 278.9 434 43.8
Thecc.06G159700 Theobroma cacao HOM05D002606 ORTHO05D003016 1.1e-69 268.1 349 48.1
Manes.17G062800 Manihot esculenta HOM05D002606 ORTHO05D003016 2.0e-68 263.8 440 42.5
CsaV3_1G032850 Cucumis sativus L. HOM05D002606 ORTHO05D003016 2.6e-68 263.5 386 44.6
CANSAT35G1314 Cannabis sativa HOM05D002606 ORTHO05D003016 2.4e-66 256.9 382 47.1
ClCG03G007250 Citrullus lanatus HOM05D002606 ORTHO05D003016 4.1e-66 256.1 388 43.3
TWI09G1585 Tripterygium wilfordii HOM05D002606 ORTHO05D003016 5.4e-66 255.8 388 44.3
Potri.011G077001 Populus trichocarpa HOM05D002606 ORTHO05D003016 2.1e-65 253.8 440 41.1
Atru.chr10.1471 Acer truncatum HOM05D002606 ORTHO05D003016 2.7e-65 253.4 433 41.8
Duzib235G0230 Durio zibethinus HOM05D002606 ORTHO05D003016 3.5e-65 253.1 386 43.8
MELO3C002697.2 Cucumis melo HOM05D002606 ORTHO05D003016 1.7e-64 250.8 386 43.0
CSS0035276 Camellia sinensis var. sinensis HOM05D002606 ORTHO05D003016 3.3e-63 246.5 455 40.2
Psat7g066200 Pisum sativum HOM05D002606 ORTHO05D003016 1.6e-62 244.2 389 43.2
Sed0008006 Sechium edule HOM05D002606 ORTHO05D003016 4.7e-62 242.7 385 42.3
Gohir.D10G033300 Gossypium hirsutum HOM05D002606 ORTHO05D003016 3.1e-61 240.0 386 42.7
CiPaw.09G132100 Carya illinoinensis HOM05D002606 ORTHO05D003016 5.2e-61 239.2 358 46.6
Gorai.011G035100 Gossypium raimondii HOM05D002606 ORTHO05D003016 5.2e-61 239.2 388 42.5
TPR.G6726 Trifolium pratense HOM05D002606 ORTHO05D003016 9.9e-60 235.0 392 43.1
Medtr8g087940 Medicago truncatula HOM05D002606 ORTHO05D003016 2.2e-59 233.8 387 41.3
Actinidia19476 Actinidia chinensis HOM05D002606 ORTHO05D003016 2.9e-59 233.4 420 41.2
Ca_17874_v3 Cicer arietinum L. HOM05D002606 ORTHO05D003016 1.9e-58 230.7 378 41.8
Gohir.A10G032600 Gossypium hirsutum HOM05D002606 ORTHO05D003016 2.7e-57 226.9 387 41.1
COL.COLO4_22817 Corchorus olitorius HOM05D002606 ORTHO05D003016 4.6e-57 226.1 358 44.1
Glyma.08G120900 Glycine max HOM05D002606 ORTHO05D003016 1.9e-55 220.7 416 40.1
Lj4g0026804 Lotus japonicus HOM05D002606 ORTHO05D003016 4.3e-55 219.5 381 43.3
TAR624G1252 Trochodendron aralioides HOM05D002606 ORTHO05D003016 4.0e-53 213.0 347 43.8
Hma1.2p1_0015F.1_g010580 Hydrangea macrophylla HOM05D002606 ORTHO05D003016 3.8e-51 206.5 320 41.6
Ciclev10014561m.g Citrus clementina HOM05D002606 ORTHO05D003016 1.1e-50 204.9 361 42.7
vmacro03988 Vaccinium macrocarpon HOM05D002606 ORTHO05D003016 1.9e-50 204.1 436 38.1
Aqoxy4G00175 Aquilegia oxysepala HOM05D002606 ORTHO05D003016 4.6e-49 199.5 355 39.2
Cpa.g.sc17.162 Carica papaya HOM05D002606 ORTHO05D003016 7.9e-49 198.7 241 51.0
Nn3g20963 Nelumbo nucifera HOM05D002606 ORTHO05D003016 1.3e-48 198.0 390 40.3
Sc24g0001920 Simmondsia chinensis HOM05D002606 ORTHO05D003016 9.0e-45 185.3 436 37.2
Sopen02g020560 Solanum pennellii HOM05D002606 ORTHO05D003016 4.6e-41 172.9 456 34.0
AUR62027619 Chenopodium quinoa HOM05D002606 ORTHO05D003016 1.0e-40 171.8 431 34.3
Actinidia16757 Actinidia chinensis HOM05D002606 ORTHO05D003016 2.3e-40 170.6 361 38.0
AUR62035823 Chenopodium quinoa HOM05D002606 ORTHO05D003016 5.1e-40 169.5 432 34.3
Solyc02g071530.2 Solanum lycopersicum HOM05D002606 ORTHO05D003016 8.7e-40 168.7 453 34.2
arahy.Tifrunner.gnm1.ann1.0CW7N2 Arachis hypogaea HOM05D002606 ORTHO05D003016 1.1e-39 168.3 367 38.7
arahy.Tifrunner.gnm1.ann1.CS3QBI Arachis hypogaea HOM05D002606 ORTHO05D003016 1.1e-39 168.3 367 38.7
Cc09_g09990 Coffea canephora HOM05D002606 ORTHO05D003016 6.2e-38 162.5 448 33.9
PSO541G3031 Papaver somniferum HOM05D002606 ORTHO05D003016 1.1e-37 161.8 399 33.1
PSO675G2539 Papaver somniferum HOM05D002606 ORTHO05D003016 1.1e-37 161.8 403 34.7
HanXRQChr04g0115551 Helianthus annuus HOM05D002606 ORTHO05D003016 1.2e-36 158.3 369 36.9
Eucgr.D00356 Eucalyptus grandis HOM05D002606 ORTHO05D003016 1.5e-36 157.9 523 30.4
Thhalv10006968m.g Eutrema salsugineum HOM05D002606 ORTHO05D003016 7.6e-36 155.6 419 32.5
THA.LOC104812654 Tarenaya hassleriana HOM05D002606 ORTHO05D003016 1.7e-35 154.5 423 34.3
CAN.G257.100 Capsicum annuum HOM05D002606 ORTHO05D003016 8.4e-35 152.1 465 31.4
Oeu001059.1 Olea europaea HOM05D002606 ORTHO05D003016 8.4e-35 152.1 425 33.2
Lalb_Chr12g0204841 Lupinus albus HOM05D002606 ORTHO05D003016 1.9e-34 151.0 538 29.9
EL10Ac8g19815 Beta vulgaris HOM05D002606 ORTHO05D003016 5.5e-34 149.4 433 32.6
VMungo0251G0960 Vigna mungo HOM05D002606 ORTHO05D003016 1.0e-32 145.2 203 45.3
Aa31LG6G6030 Aethionema arabicum HOM05D002606 ORTHO05D003016 1.3e-32 144.8 414 32.4
Carub.0001s2785 Capsella rubella HOM05D002606 ORTHO05D003016 1.8e-32 144.4 418 33.3
CSS0038732 Camellia sinensis var. sinensis HOM05D002606 ORTHO05D003016 5.1e-32 142.9 517 28.8
AT1G29630 Arabidopsis thaliana HOM05D002606 ORTHO05D003016 1.1e-31 141.7 429 30.8
MSTRG.16192 Avicennia marina HOM05D002606 ORTHO05D003016 1.1e-31 141.7 437 32.5
Haze_05456 Corylus avellana HOM05D002606 ORTHO05D003016 2.5e-31 140.6 249 39.8
Eucgr.D00367 Eucalyptus grandis HOM05D002606 ORTHO05D003016 2.5e-31 140.6 189 46.0
Phvul.002G243800 Phaseolus vulgaris HOM05D002606 ORTHO05D003016 2.5e-31 140.6 518 30.7
CARHR028950 Cardamine hirsuta HOM05D002606 ORTHO05D003016 3.3e-31 140.2 419 30.5
BraA07t28845Z Brassica rapa HOM05D002606 ORTHO05D003016 4.3e-31 139.8 444 31.3
AL1G43460 Arabidopsis lyrata HOM05D002606 ORTHO05D003016 5.7e-31 139.4 426 30.3
Lj1A1180T81 Lonicera japonica HOM05D002606 ORTHO05D003016 5.7e-31 139.4 430 33.3
A07p10450 Brassica napus HOM05D002606 ORTHO05D003016 1.3e-30 138.3 433 30.7
MD00G1093000 Malus domestica HOM05D002606 ORTHO05D003016 1.6e-30 137.9 115 67.8
Haze_05457 Corylus avellana HOM05D002606 ORTHO05D003016 2.8e-30 137.1 100 71.0
C07p16090 Brassica napus HOM05D002606 ORTHO05D003016 4.8e-30 136.3 437 30.9
BcaB03g13871 Brassica carinata HOM05D002606 ORTHO05D003016 6.3e-30 136.0 453 30.0
BolC7t42094H Brassica oleracea HOM05D002606 ORTHO05D003016 8.2e-30 135.6 437 31.1
PGSC0003DMG400007247 Solanum tuberosum HOM05D002606 ORTHO05D003016 8.2e-30 135.6 418 32.3
Migut.M00971 Erythranthe guttata HOM05D002606 ORTHO05D003016 1.1e-29 135.2 369 35.2
Ah.14g086800 Amaranthus hybridus HOM05D002606 ORTHO05D003016 2.4e-29 134.0 421 33.7
ATR0763G174 Amborella trichopoda HOM05D002606 ORTHO05D003016 1.5e-28 131.3 392 32.7
DCAR_003956 Daucus carota HOM05D002606 ORTHO05D003016 2.0e-28 131.0 562 27.0
Nitab4.5_0003746g0040 Nicotiana tabacum HOM05D002606 ORTHO05D003016 4.5e-28 129.8 204 44.1
Sp1g25530 Schrenkiella parvula HOM05D002606 ORTHO05D003016 4.5e-28 129.8 425 32.5
ECA236G2241 Erigeron canadensis HOM05D002606 ORTHO05D003016 1.0e-27 128.6 474 28.5
Nitab4.5_0007383g0040 Nicotiana tabacum HOM05D002606 ORTHO05D003016 1.3e-27 128.3 193 45.1
BcaC06g35445 Brassica carinata HOM05D002606 ORTHO05D003016 1.1e-26 125.2 381 32.0
HPP92_017792 Vanilla planifolia HOM05D002606 ORTHO05D003016 1.9e-26 124.4 378 33.1
Peaxi162Scf00308g00815 Petunia axillaris HOM05D002606 ORTHO05D003016 2.5e-26 124.0 434 31.3
Hund17843 Selenicereus undatus HOM05D002606 ORTHO05D003016 2.5e-26 124.0 434 29.7
SGA_v2.0_scaffold1G00119 Striga asiatica HOM05D002606 ORTHO05D003016 1.6e-25 121.3 403 31.3
GSVIVG01021316001 Vitis vinifera HOM05D002606 ORTHO05D003016 1.0e-24 118.6 133 54.9
Haze_05454 Corylus avellana HOM05D002606 ORTHO05D003016 5.7e-23 112.8 104 61.5
SalBow8G3031 Salvia bowleyana HOM05D002606 ORTHO05D003016 9.7e-23 112.1 469 28.6
Os01g0777300 Oryza sativa ssp. japonica HOM05D002606 ORTHO05D003016 1.3e-22 111.7 385 34.8
SalBow8G0847 Salvia bowleyana HOM05D002606 ORTHO05D003016 2.8e-22 110.5 469 28.1
Lsat_1_v5_gn_7_26381 Lactuca sativa HOM05D002606 ORTHO05D003016 9.1e-21 105.5 173 43.9
Zm00001eb151620 Zea mays HOM05D002606 ORTHO05D003016 5.9e-20 102.8 360 30.6
HanXRQChr13g0408621 Helianthus annuus HOM05D002606 ORTHO05D003016 2.6e-15 87.4 243 33.7
unitig_32.g11096 Utricularia gibba HOM05D002606 ORTHO05D003016 2.6e-12 77.4 142 37.3
SHI19402 Sapria himalayana HOM05D002606 ORTHO05D003016 1.3e-11 75.1 89 47.2
Psat4g169240 Pisum sativum HOM05D004443 ORTHO05D003016 1.9e-10 71.2 192 33.3
Zm00001eb032720 Zea mays HOM05D006146 ORTHO05D007924 1.9e-10 71.2 63 60.3
HanXRQChr01g0030101 Helianthus annuus HOM05D002606 ORTHO05D003016 1.0e-08 65.5 47 70.2
Pp3c23_8000 Physcomitrium patens HOM05D002606 ORTHO05D003016 5.7e-07 59.7 44 59.1


User provided reference genes

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