Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0414721 Rosa chinensis HOM05D015988 ORTHO05D016310 1.8e-71 272.7 157 100.0
FvH4_4g13800 Fragaria vesca HOM05D015988 ORTHO05D016310 3.2e-65 251.9 155 92.9
FAN07G0226 Fragaria x ananassa HOM05D015988 ORTHO05D016310 3.2e-65 251.9 155 92.9
FAN17G2948 Fragaria x ananassa HOM05D015988 ORTHO05D016310 3.2e-65 251.9 155 92.9
FAN22G1035 Fragaria x ananassa HOM05D015988 ORTHO05D016310 7.1e-65 250.8 155 92.3
MD04G1010500 Malus domestica HOM05D015988 ORTHO05D016310 1.2e-22 110.5 97 54.6
FAN12G1832 Fragaria x ananassa HOM05D015988 ORTHO05D016310 1.2e-19 100.5 155 42.6
Prupe.1G010200 Prunus persica HOM05D015988 ORTHO05D016310 2.7e-19 99.4 83 60.2
FAN12G2523 Fragaria x ananassa HOM05D054090 ORTHO05D016310 4.1e-12 75.5 83 48.2
Prupe.1G009100 Prunus persica HOM05D015988 ORTHO05D016310 5.4e-12 75.1 83 48.2
FAN22G0825 Fragaria x ananassa HOM05D054090 ORTHO05D016310 1.6e-11 73.6 83 45.8
Eucgr.I01884 Eucalyptus grandis HOM05D000629 ORTHO05D000576 9.5e-09 64.3 101 32.7
Hund05933 Selenicereus undatus HOM05D000629 ORTHO05D000576 9.5e-09 64.3 77 39.0
Dinv24925 Davidia involucrata HOM05D000629 ORTHO05D000576 1.2e-08 63.9 77 37.7
CiPaw.06G077100 Carya illinoinensis HOM05D000629 ORTHO05D000576 2.1e-08 63.2 86 37.2
Sc11g0008010 Simmondsia chinensis HOM05D000629 ORTHO05D000576 2.1e-08 63.2 104 33.7
EL10Ac6g13094 Beta vulgaris HOM05D000629 ORTHO05D000576 2.8e-08 62.8 76 40.8
Os01g0109700 Oryza sativa ssp. japonica HOM05D000629 ORTHO05D000576 3.6e-08 62.4 77 39.0
Zm00001eb126360 Zea mays HOM05D000629 ORTHO05D000576 3.6e-08 62.4 77 40.3
Zm00001eb334400 Zea mays HOM05D000629 ORTHO05D000576 3.6e-08 62.4 77 40.3
CiPaw.05G144300 Carya illinoinensis HOM05D000629 ORTHO05D000576 6.1e-08 61.6 77 41.6
Hund16094 Selenicereus undatus HOM05D000629 ORTHO05D000576 6.1e-08 61.6 77 36.4
Lju41A28G115 Lonicera japonica HOM05D000629 ORTHO05D000576 8.0e-08 61.2 77 37.7
Prupe.3G276300 Prunus persica HOM05D000629 ORTHO05D000576 8.0e-08 61.2 101 32.7
SEGI_13294 Sequoiadendron giganteum HOM05D000629 ORTHO05D000576 8.0e-08 61.2 77 36.4
Thecc.02G238600 Theobroma cacao HOM05D000629 ORTHO05D000576 8.0e-08 61.2 77 39.0
CAN.G206.76 Capsicum annuum HOM05D000629 ORTHO05D000576 1.0e-07 60.8 85 36.5
Nn3g17050 Nelumbo nucifera HOM05D000629 ORTHO05D000576 1.0e-07 60.8 77 36.4
Sopen02g032130 Solanum pennellii HOM05D000629 ORTHO05D000013 1.0e-07 60.8 73 39.7
Duzib251G0389 Durio zibethinus HOM05D000629 ORTHO05D000576 1.4e-07 60.5 83 34.9
MBI15_g23242_MAGBIO Magnolia biondii HOM05D000629 ORTHO05D000576 1.4e-07 60.5 75 36.0
QL03p067436 Quercus lobata HOM05D000629 ORTHO05D000576 1.4e-07 60.5 77 39.0
SGA_v2.0_scaffold30G12504 Striga asiatica HOM05D000629 ORTHO05D000576 1.4e-07 60.5 81 38.3
vmacro01207 Vaccinium macrocarpon HOM05D000629 ORTHO05D000576 1.4e-07 60.5 98 33.7
GSVIVG01020136001 Vitis vinifera HOM05D000629 ORTHO05D000576 1.4e-07 60.5 77 36.4
arahy.Tifrunner.gnm1.ann1.38NBAQ Arachis hypogaea HOM05D000629 ORTHO05D000576 1.8e-07 60.1 77 31.2
arahy.Tifrunner.gnm1.ann1.TFL5QC Arachis hypogaea HOM05D000629 ORTHO05D000576 1.8e-07 60.1 77 31.2
Cc07_g02780 Coffea canephora HOM05D000629 ORTHO05D000576 1.8e-07 60.1 78 35.9
MD13G1084700 Malus domestica HOM05D000629 ORTHO05D000576 1.8e-07 60.1 81 37.0
MD16G1083700 Malus domestica HOM05D000629 ORTHO05D000576 1.8e-07 60.1 81 37.0
Lalb_Chr06g0176551 Lupinus albus HOM05D000629 ORTHO05D000576 2.3e-07 59.7 97 30.9
Lalb_Chr21g0319171 Lupinus albus HOM05D000629 ORTHO05D000576 2.3e-07 59.7 97 30.9
Manes.17G117254 Manihot esculenta HOM05D000629 ORTHO05D000576 2.3e-07 59.7 101 31.7
Phvul.004G022900 Phaseolus vulgaris HOM05D000629 ORTHO05D000576 2.3e-07 59.7 77 32.5
RcHm_v2.0_Chr2g0169931 Rosa chinensis HOM05D000629 ORTHO05D000576 2.3e-07 59.7 101 31.7
TAR629G1864 Trochodendron aralioides HOM05D000629 ORTHO05D000576 2.3e-07 59.7 77 37.7
VMungo0464G1995 Vigna mungo HOM05D000629 ORTHO05D000576 2.3e-07 59.7 77 32.5
FvH4_4g35300 Fragaria vesca HOM05D000629 ORTHO05D000576 3.0e-07 59.3 77 39.0
TPR.G32588 Trifolium pratense HOM05D000629 ORTHO05D000576 3.0e-07 59.3 101 30.7
Dinv31135 Davidia involucrata HOM05D000629 ORTHO05D000576 4.0e-07 58.9 76 36.8
Lalb_Chr16g0382601 Lupinus albus HOM05D000629 ORTHO05D000576 4.0e-07 58.9 73 41.1
Sc11g0001520 Simmondsia chinensis HOM05D000629 ORTHO05D000576 4.0e-07 58.9 77 36.4
Gohir.D02G167400 Gossypium hirsutum HOM05D000629 ORTHO05D000576 5.2e-07 58.5 77 36.4
Gorai.005G187800 Gossypium raimondii HOM05D000629 ORTHO05D000576 5.2e-07 58.5 77 36.4
Rhsim12G0052100 Rhododendron simsii HOM05D000629 ORTHO05D000576 5.2e-07 58.5 78 33.3
Sc14g0008500 Simmondsia chinensis HOM05D000629 ORTHO05D000576 5.2e-07 58.5 77 35.1
Ah.03g132080 Amaranthus hybridus HOM05D000629 ORTHO05D000576 6.8e-07 58.2 76 39.5
FAN12G3339 Fragaria x ananassa HOM05D000629 ORTHO05D000576 6.8e-07 58.2 75 38.7
FAN17G1325 Fragaria x ananassa HOM05D000629 ORTHO05D000576 6.8e-07 58.2 75 38.7
FAN22G2288 Fragaria x ananassa HOM05D000629 ORTHO05D000576 6.8e-07 58.2 75 38.7
Potri.008G192200 Populus trichocarpa HOM05D000629 ORTHO05D000576 6.8e-07 58.2 77 37.7
PGR142G2915 Punica granatum HOM05D000629 ORTHO05D000576 6.8e-07 58.2 77 33.8
PGSC0003DMG400001399 Solanum tuberosum HOM05D000629 ORTHO05D000576 6.8e-07 58.2 99 32.3
TWI36G1084 Tripterygium wilfordii HOM05D000629 ORTHO05D000576 6.8e-07 58.2 77 32.5
Aqoxy3G03153 Aquilegia oxysepala HOM05D000629 ORTHO05D000576 8.9e-07 57.8 76 34.2
AUR62026328 Chenopodium quinoa HOM05D000629 ORTHO05D000576 8.9e-07 57.8 76 38.2
AUR62026526 Chenopodium quinoa HOM05D000629 ORTHO05D000576 8.9e-07 57.8 76 38.2
Duzib268G1764 Durio zibethinus HOM05D000629 ORTHO05D000576 8.9e-07 57.8 77 37.7
FAN07G2349 Fragaria x ananassa HOM05D000629 ORTHO05D000576 8.9e-07 57.8 75 38.7
Potri.010G038700 Populus trichocarpa HOM05D000629 ORTHO05D000576 8.9e-07 57.8 77 36.4
Sabra08G0145700 Salix brachista HOM05D000629 ORTHO05D000576 8.9e-07 57.8 77 37.7
CARHR075690 Cardamine hirsuta HOM05D000629 ORTHO05D000576 1.2e-06 57.4 78 33.3
Eucgr.J02161 Eucalyptus grandis HOM05D000629 ORTHO05D000576 1.2e-06 57.4 77 35.1
Glyma.13G067800 Glycine max HOM05D000629 ORTHO05D000576 1.2e-06 57.4 86 30.2
Medtr6g008995 Medicago truncatula HOM05D000629 ORTHO05D000576 1.2e-06 57.4 96 31.2
PSO591G0034 Papaver somniferum HOM05D000629 ORTHO05D000576 1.2e-06 57.4 77 36.4
PSO832G3953 Papaver somniferum HOM05D000629 ORTHO05D000576 1.2e-06 57.4 77 36.4
Phvul.002G077800 Phaseolus vulgaris HOM05D000629 ORTHO05D000576 1.2e-06 57.4 73 39.7
SGA_v2.0_scaffold224G42970 Striga asiatica HOM05D000629 ORTHO05D000576 1.2e-06 57.4 77 37.7
TWI18G0523 Tripterygium wilfordii HOM05D000629 ORTHO05D000576 1.2e-06 57.4 78 35.9
Atru.chr11.1925 Acer truncatum HOM05D000629 ORTHO05D000576 1.5e-06 57.0 75 38.7
arahy.Tifrunner.gnm1.ann1.74EE6B Arachis hypogaea HOM05D000629 ORTHO05D000576 1.5e-06 57.0 73 39.7
arahy.Tifrunner.gnm1.ann1.MG25IW Arachis hypogaea HOM05D000629 ORTHO05D000576 1.5e-06 57.0 73 39.7
Ca_04238_v3 Cicer arietinum L. HOM05D000629 ORTHO05D000576 1.5e-06 57.0 88 30.7
Prupe.1G262300 Prunus persica HOM05D000629 ORTHO05D000576 1.5e-06 57.0 77 37.7
Solyc02g067570.3 Solanum lycopersicum HOM05D000629 ORTHO05D000576 1.5e-06 57.0 77 35.1
Sopen02g016700 Solanum pennellii HOM05D000629 ORTHO05D000576 1.5e-06 57.0 77 35.1
PSO161G0028 Papaver somniferum HOM05D000629 ORTHO05D000576 2.0e-06 56.6 80 36.2
Peaxi162Scf00059g00016 Petunia axillaris HOM05D000629 ORTHO05D000576 2.0e-06 56.6 77 35.1
RcHm_v2.0_Chr4g0444901 Rosa chinensis HOM05D000629 ORTHO05D000576 2.0e-06 56.6 77 37.7
Sp3g00760 Schrenkiella parvula HOM05D000629 ORTHO05D000576 2.0e-06 56.6 78 33.3
CDE06G1214 Ceratophyllum demersum HOM05D000629 ORTHO05D000576 2.6e-06 56.2 76 34.2
CsaV3_5G032000 Cucumis sativus L. HOM05D000629 ORTHO05D000576 2.6e-06 56.2 77 36.4
Glyma.01G038300 Glycine max HOM05D000629 ORTHO05D000576 2.6e-06 56.2 73 39.7
Lj4g0011434 Lotus japonicus HOM05D000629 ORTHO05D000576 2.6e-06 56.2 77 36.4
Nitab4.5_0001727g0110 Nicotiana tabacum HOM05D000629 ORTHO05D000576 2.6e-06 56.2 75 36.0
Psat1g078160 Pisum sativum HOM05D000629 ORTHO05D000576 2.6e-06 56.2 101 30.7
CANSAT01G0613 Cannabis sativa HOM05D000629 ORTHO05D000576 3.4e-06 55.8 77 36.4
Lj2g0011859 Lotus japonicus HOM05D000629 ORTHO05D000576 3.4e-06 55.8 77 37.7
Sed0005931 Sechium edule HOM05D000629 ORTHO05D000576 3.4e-06 55.8 77 36.4
Thecc.04G065500 Theobroma cacao HOM05D000629 ORTHO05D000576 3.4e-06 55.8 84 33.3
TWI75G0044 Tripterygium wilfordii HOM05D000629 ORTHO05D000576 3.4e-06 55.8 81 33.3
TAR371G0714 Trochodendron aralioides HOM05D000629 ORTHO05D000576 3.4e-06 55.8 72 37.5
TAR622G0385 Trochodendron aralioides HOM05D000629 ORTHO05D000576 3.4e-06 55.8 78 37.2
VMungo1215G0505 Vigna mungo HOM05D000629 ORTHO05D000576 3.4e-06 55.8 73 39.7
AL6G25840 Arabidopsis lyrata HOM05D000629 ORTHO05D000576 4.4e-06 55.5 78 32.1
AT5G15020 Arabidopsis thaliana HOM05D000629 ORTHO05D000576 4.4e-06 55.5 78 32.1
Duzib264G1131 Durio zibethinus HOM05D000629 ORTHO05D000576 4.4e-06 55.5 77 33.8
Glyma.02G026700 Glycine max HOM05D000629 ORTHO05D000576 4.4e-06 55.5 73 39.7
Gohir.A03G144200 Gossypium hirsutum HOM05D000629 ORTHO05D000576 4.4e-06 55.5 77 35.1
Gohir.A11G068400 Gossypium hirsutum HOM05D000629 ORTHO05D000576 4.4e-06 55.5 77 33.8
Gohir.D11G072600 Gossypium hirsutum HOM05D000629 ORTHO05D000576 4.4e-06 55.5 77 33.8
Gorai.007G077800 Gossypium raimondii HOM05D000629 ORTHO05D000576 4.4e-06 55.5 77 33.8
SalBow1G0078 Salvia bowleyana HOM05D000629 ORTHO05D000576 4.4e-06 55.5 101 31.7
unitig_21.g20510 Utricularia gibba HOM05D000629 ORTHO05D000576 4.4e-06 55.5 74 35.1
Cfa009083 Carpinus fangiana HOM05D000629 ORTHO05D000576 5.8e-06 55.1 77 37.7
MELO3C012036.2 Cucumis melo HOM05D000629 ORTHO05D000576 5.8e-06 55.1 77 36.4
Gohir.A09G024000 Gossypium hirsutum HOM05D000629 ORTHO05D000576 5.8e-06 55.1 77 33.8
Gohir.D09G023200 Gossypium hirsutum HOM05D000629 ORTHO05D000576 5.8e-06 55.1 77 33.8
Gorai.006G027300 Gossypium raimondii HOM05D000629 ORTHO05D000576 5.8e-06 55.1 77 33.8
Medtr6g008970 Medicago truncatula HOM05D000629 ORTHO05D000576 5.8e-06 55.1 77 31.2
Oeu018662.3 Olea europaea HOM05D000629 ORTHO05D000576 5.8e-06 55.1 77 33.8
THA.LOC104821055 Tarenaya hassleriana HOM05D000629 ORTHO05D000576 5.8e-06 55.1 78 32.1
Actinidia04058 Actinidia chinensis HOM05D000629 ORTHO05D000576 7.5e-06 54.7 78 33.3
ClCG05G024900 Citrullus lanatus HOM05D000629 ORTHO05D000576 7.5e-06 54.7 77 36.4
Duzib187G0377 Durio zibethinus HOM05D000629 ORTHO05D000576 7.5e-06 54.7 77 33.8
PSO478G4498 Papaver somniferum HOM05D000629 ORTHO05D000576 7.5e-06 54.7 79 35.4
TWI56G0743 Tripterygium wilfordii HOM05D000629 ORTHO05D000576 7.5e-06 54.7 77 31.2
AL3G10910 Arabidopsis lyrata HOM05D000629 ORTHO05D000576 9.8e-06 54.3 78 30.8
MSTRG.23972 Avicennia marina HOM05D000629 ORTHO05D000576 9.8e-06 54.3 101 30.7
BNapus_Darmor_BZH_scaffold_133p00100 Brassica napus HOM05D000629 ORTHO05D000576 9.8e-06 54.3 78 30.8
BraA01t04659Z Brassica rapa HOM05D000629 ORTHO05D000576 9.8e-06 54.3 78 30.8
CAN.G720.7 Capsicum annuum HOM05D000629 ORTHO05D000576 9.8e-06 54.3 85 35.3
Migut.M00134 Erythranthe guttata HOM05D000629 ORTHO05D000576 9.8e-06 54.3 77 35.1
vmacro18221 Vaccinium macrocarpon HOM05D000629 ORTHO05D000576 9.8e-06 54.3 73 35.6


User provided reference genes

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