Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0497511 Rosa chinensis HOM05D000548 ORTHO05D344641 1.0e-58 229.9 120 100.0
RcHm_v2.0_Chr4g0421291 Rosa chinensis HOM05D000548 ORTHO05D000987 1.2e-08 63.5 30 90.0
FvH4_4g17350 Fragaria vesca HOM05D000548 ORTHO05D000987 1.6e-08 63.2 30 86.7
FAN12G2397 Fragaria x ananassa HOM05D000548 ORTHO05D000987 1.6e-08 63.2 30 86.7
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.6e-08 63.2 30 86.7
FAN22G1179 Fragaria x ananassa HOM05D000548 ORTHO05D000987 1.6e-08 63.2 30 86.7
CiPaw.01G152400 Carya illinoinensis HOM05D000548 ORTHO05D000987 6.1e-08 61.2 30 86.7
MD13G1172900 Malus domestica HOM05D000548 ORTHO05D000987 6.1e-08 61.2 30 86.7
MD16G1174300 Malus domestica HOM05D000548 ORTHO05D000987 6.1e-08 61.2 30 86.7
Prupe.1G141000 Prunus persica HOM05D000548 ORTHO05D000987 6.1e-08 61.2 30 86.7
GSVIVG01017793001 Vitis vinifera HOM05D000548 ORTHO05D000987 1.4e-07 60.1 30 80.0
CiPaw.02G085900 Carya illinoinensis HOM05D000548 ORTHO05D000987 2.3e-07 59.3 30 83.3
TPR.G1516 Trifolium pratense HOM05D000548 ORTHO05D000987 2.3e-07 59.3 30 83.3
Glyma.13G215600 Glycine max HOM05D000548 ORTHO05D000987 3.0e-07 58.9 30 83.3
Medtr2g020040 Medicago truncatula HOM05D000548 ORTHO05D000987 3.0e-07 58.9 30 83.3
Gohir.A02G046600 Gossypium hirsutum HOM05D000548 ORTHO05D000987 4.0e-07 58.5 30 80.0
Gohir.D02G052300 Gossypium hirsutum HOM05D000548 ORTHO05D000987 4.0e-07 58.5 30 80.0
Gorai.005G057600 Gossypium raimondii HOM05D000548 ORTHO05D000987 4.0e-07 58.5 30 80.0
Eucgr.B01270 Eucalyptus grandis HOM05D000548 ORTHO05D000987 5.2e-07 58.2 30 80.0
Hma1.2p1_0823F.1_g224710 Hydrangea macrophylla HOM05D000548 ORTHO05D000987 5.2e-07 58.2 30 76.7
Duzib151G0551 Durio zibethinus HOM05D000548 ORTHO05D000987 6.8e-07 57.8 30 80.0
Glyma.07G250900 Glycine max HOM05D000548 ORTHO05D000987 6.8e-07 57.8 30 80.0
Ca_00567_v3 Cicer arietinum L. HOM05D000548 ORTHO05D000987 8.9e-07 57.4 30 83.3
Glyma.15G097300 Glycine max HOM05D000548 ORTHO05D000987 8.9e-07 57.4 30 76.7
Glyma.17G023400 Glycine max HOM05D000548 ORTHO05D000987 8.9e-07 57.4 30 76.7
Ciclev10005640m.g Citrus clementina HOM05D000548 ORTHO05D000987 1.2e-06 57.0 30 76.7
COL.COLO4_13919 Corchorus olitorius HOM05D000548 ORTHO05D000987 1.2e-06 57.0 30 76.7
Dinv38318 Davidia involucrata HOM05D000548 ORTHO05D000987 1.2e-06 57.0 30 80.0
Dinv44419 Davidia involucrata HOM05D000548 ORTHO05D000987 1.2e-06 57.0 30 76.7
Gohir.D10G167200 Gossypium hirsutum HOM05D000548 ORTHO05D000987 1.2e-06 57.0 32 71.9
LjContig00389g0001246 Lotus japonicus HOM05D000548 ORTHO05D000987 1.2e-06 57.0 29 82.8
QL06p007577 Quercus lobata HOM05D000548 ORTHO05D000987 1.2e-06 57.0 30 80.0
Thecc.04G278700 Theobroma cacao HOM05D000548 ORTHO05D000987 1.2e-06 57.0 30 76.7
Lsat_1_v5_gn_5_50740 Lactuca sativa HOM05D000548 ORTHO05D000987 1.5e-06 56.6 30 73.3
CAN.G256.10 Capsicum annuum HOM05D000548 ORTHO05D000987 2.0e-06 56.2 30 76.7
vmacro08191 Vaccinium macrocarpon HOM05D000548 ORTHO05D000987 2.0e-06 56.2 35 68.6
CSS0002637 Camellia sinensis var. sinensis HOM05D000548 ORTHO05D000987 3.4e-06 55.5 29 79.3
CANSAT78G0879 Cannabis sativa HOM05D000548 ORTHO05D000987 3.4e-06 55.5 29 75.9
AUR62043450 Chenopodium quinoa HOM05D000548 ORTHO05D000987 3.4e-06 55.5 30 76.7
Gorai.011G186700 Gossypium raimondii HOM05D000548 ORTHO05D000987 3.4e-06 55.5 30 73.3
Phvul.006G162000 Phaseolus vulgaris HOM05D000548 ORTHO05D000987 3.4e-06 55.5 30 80.0
VMungo0540G1656 Vigna mungo HOM05D000548 ORTHO05D000987 3.4e-06 55.5 30 80.0
arahy.Tifrunner.gnm1.ann1.JX4TU4 Arachis hypogaea HOM05D000548 ORTHO05D000987 4.4e-06 55.1 30 73.3
arahy.Tifrunner.gnm1.ann1.WY5R7K Arachis hypogaea HOM05D000548 ORTHO05D000987 4.4e-06 55.1 30 73.3
Psat1g187400 Pisum sativum HOM05D000548 ORTHO05D000987 4.4e-06 55.1 29 79.3
Solyc06g054540.3 Solanum lycopersicum HOM05D000548 ORTHO05D000987 4.4e-06 55.1 30 73.3
PGSC0003DMG400030762 Solanum tuberosum HOM05D000548 ORTHO05D000987 4.4e-06 55.1 30 73.3
CSS0000790 Camellia sinensis var. sinensis HOM05D000548 ORTHO05D000987 5.7e-06 54.7 30 73.3
CSS0016923 Camellia sinensis var. sinensis HOM05D000548 ORTHO05D000987 5.7e-06 54.7 30 73.3
TAR633G2435 Trochodendron aralioides HOM05D000548 ORTHO05D000987 5.7e-06 54.7 30 73.3
unitig_748.g8373 Utricularia gibba HOM05D000548 ORTHO05D000987 5.7e-06 54.7 29 75.9
AUR62035360 Chenopodium quinoa HOM05D000548 ORTHO05D000987 7.5e-06 54.3 29 75.9
Cc03_g02250 Coffea canephora HOM05D000548 ORTHO05D000987 9.8e-06 53.9 30 70.0
Manes.15G016100 Manihot esculenta HOM05D000548 ORTHO05D000987 9.8e-06 53.9 30 70.0
Sopen06g019610 Solanum pennellii HOM05D000548 ORTHO05D000987 9.8e-06 53.9 29 72.4
TAR383G0463 Trochodendron aralioides HOM05D000548 ORTHO05D000987 9.8e-06 53.9 30 73.3


User provided reference genes

Program Settings