Gene: Sopen06g019610

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g019610
  • Transcript Identifier Sopen06g019610.1
  • Gene Type Coding gene
  • Location Spenn-ch06 : 47030751-47034721 : negative

Gene Family Information

  • ID HOM05D000548
  • #Genes/#Species 997/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g019610.1

Descriptions

  • Description CHY-type/CTCHY-type/RING-type Zinc finger protein | FUNCTIONS IN: zinc ion binding | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type , Zinc finger, CHY-type , Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1901485
ISO
PLAZA Integrative Orthologypositive regulation of transcription factor catabolic process AT5G18650
GO:1900425
ISO
PLAZA Integrative Orthologynegative regulation of defense response to bacterium AT5G18650
GO:0016567
ISO
PLAZA Integrative Orthologyprotein ubiquitination AT5G18650

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
InterProzinc ion binding
GO:0046872
IEA
InterPrometal ion binding
GO:0004842
ISO
PLAZA Integrative Orthologyubiquitin-protein transferase activity AT5G18650
GO:0008134
ISO
PLAZA Integrative Orthologytranscription factor binding AT5G18650

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G18650
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G18650

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR039512 RCHY1, zinc-ribbon
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR037274 Zinc finger, CHY-type superfamily
IPR037275 Zinc finger, CTCHY-type superfamily
IPR018957 Zinc finger, C3HC4 RING-type
IPR001841 Zinc finger, RING-type
IPR008913 Zinc finger, CHY-type
Mapman id Description
35.1 not assigned.annotated