Gene: vmacro08191
General Information
Structural Information
- Species Vaccinium macrocarpon
- Gene Identifier vmacro08191
- Transcript Identifier vmacro08191-RA
- Gene Type Coding gene
- Location scaffold00533_Vaccinium_macrocarpon_Stevens_v1 : 40304-47731 : positive
Gene Family Information
- ID HOM05D000548
- #Genes/#Species 997/100
- Phylogenetic origin
- ID ORTHO05D000987
- #Genes/#Species 528/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id vmacro08191_Vaccinium_macrocarpon_Stevens_v1
Descriptions
- Description Similar to MIEL1: E3 ubiquitin-protein ligase MIEL1 (Arabidopsis thaliana OX=3702)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:1901485 | ISO | PLAZA Integrative Orthology | positive regulation of transcription factor catabolic process | AT5G18650 |
| GO:1900425 | ISO | PLAZA Integrative Orthology | negative regulation of defense response to bacterium | AT5G18650 |
| GO:0016567 | ISO | PLAZA Integrative Orthology | protein ubiquitination | AT5G18650 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0004523 | IEA | InterPro | RNA-DNA hybrid ribonuclease activity | |
| GO:0046872 | IEA | InterPro | metal ion binding | |
| GO:0004842 | ISO | PLAZA Integrative Orthology | ubiquitin-protein transferase activity | AT5G18650 |
| GO:0008134 | ISO | PLAZA Integrative Orthology | transcription factor binding | AT5G18650 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G18650 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT5G18650 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR001841 | Zinc finger, RING-type |
| IPR008913 | Zinc finger, CHY-type |
| IPR044730 | Ribonuclease H-like domain, plant type |
| IPR036397 | Ribonuclease H superfamily |
| IPR037275 | Zinc finger, CTCHY-type superfamily |
| IPR037274 | Zinc finger, CHY-type superfamily |
| IPR002156 | Ribonuclease H domain |
| IPR018957 | Zinc finger, C3HC4 RING-type |
| IPR012337 | Ribonuclease H-like superfamily |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |