Gene: Solyc06g054540.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc06g054540.3
  • Transcript Identifier Solyc06g054540.3.1
  • Gene Type Coding gene
  • Location SL4.0ch06 : 35084864-35088834 : negative

Gene Family Information

  • ID HOM05D000548
  • #Genes/#Species 997/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc06g054540.3.1
  • uniprot A0A3Q7GTA0
  • gene_id Solyc06g054540

Descriptions

  • Description E3 ubiquitin-protein ligase MIEL1-like (AHRD V3.3 *** A0A1S4BAM5_TOBAC)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006511
IBA
GOA Databaseubiquitin-dependent protein catabolic process
GO:0016567
IBA
GOA Databaseprotein ubiquitination
GO:1901485
ISO
PLAZA Integrative Orthologypositive regulation of transcription factor catabolic process AT5G18650
GO:1900425
ISO
PLAZA Integrative Orthologynegative regulation of defense response to bacterium AT5G18650

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046872
IEA
InterPrometal ion binding
GO:0061630
IBA
GOA Databaseubiquitin protein ligase activity
GO:0004842
ISO
PLAZA Integrative Orthologyubiquitin-protein transferase activity AT5G18650
GO:0008134
ISO
PLAZA Integrative Orthologytranscription factor binding AT5G18650

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
GOA Databasenucleus
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G18650

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR037274 Zinc finger, CHY-type superfamily
IPR018957 Zinc finger, C3HC4 RING-type
IPR001841 Zinc finger, RING-type
IPR037275 Zinc finger, CTCHY-type superfamily
IPR039512 RCHY1, zinc-ribbon
IPR008913 Zinc finger, CHY-type
Mapman id Description
35.1 not assigned.annotated