Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0496311 Rosa chinensis HOM05D002024 ORTHO05D004352 1.7e-177 625.9 319 100.0
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 1.7e-145 519.6 320 85.0
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 4.9e-145 518.1 320 85.0
FAN19G0777 Fragaria x ananassa HOM05D002024 ORTHO05D004352 3.4e-138 495.4 320 83.1
FvH4_1g28500 Fragaria vesca HOM05D002024 ORTHO05D004352 1.4e-131 473.4 320 80.0
MD14G1006500 Malus domestica HOM05D002024 ORTHO05D004352 6.2e-100 368.2 343 63.3
Prupe.7G010800 Prunus persica HOM05D002024 ORTHO05D004352 2.9e-97 359.4 351 61.5
MD12G1009000 Malus domestica HOM05D002024 ORTHO05D004352 1.5e-93 347.1 342 61.4
Haze_20441 Corylus avellana HOM05D002024 ORTHO05D004352 5.2e-62 242.3 375 45.9
Cfa017696 Carpinus fangiana HOM05D002024 ORTHO05D004352 1.1e-56 224.6 375 44.3
Hma1.2p1_0106F.1_g051130 Hydrangea macrophylla HOM05D002024 ORTHO05D004352 2.7e-55 219.9 329 47.1
Thecc.05G244100 Theobroma cacao HOM05D002024 ORTHO05D004352 8.0e-55 218.4 347 42.9
QL07p017660 Quercus lobata HOM05D002024 ORTHO05D004352 1.8e-54 217.2 340 48.8
TAR623G1628 Trochodendron aralioides HOM05D002024 ORTHO05D004352 4.4e-53 212.6 375 42.4
Gohir.A11G231400 Gossypium hirsutum HOM05D002024 ORTHO05D004352 2.8e-52 209.9 283 49.1
Gorai.007G256900 Gossypium raimondii HOM05D002024 ORTHO05D004352 8.3e-52 208.4 283 47.7
Atru.chr2.1480 Acer truncatum HOM05D002024 ORTHO05D004352 2.4e-51 206.8 375 42.7
Glyma.17G187400 Glycine max HOM05D002024 ORTHO05D004352 2.7e-50 203.4 275 46.2
CANSAT78G1633 Cannabis sativa HOM05D002024 ORTHO05D004352 5.9e-50 202.2 336 41.4
GSVIVG01029953001 Vitis vinifera HOM05D002024 ORTHO05D004352 1.0e-49 201.4 272 49.3
Gohir.D11G242700 Gossypium hirsutum HOM05D002024 ORTHO05D004352 8.5e-49 198.4 281 47.0
Lalb_Chr02g0157321 Lupinus albus HOM05D002024 ORTHO05D004352 1.1e-48 198.0 275 46.2
Duzib128G1716 Durio zibethinus HOM05D002024 ORTHO05D004352 3.2e-48 196.4 364 40.7
COL.COLO4_28619 Corchorus olitorius HOM05D002024 ORTHO05D004352 4.2e-48 196.1 367 43.6
Duzib177G0567 Durio zibethinus HOM05D002024 ORTHO05D004352 2.1e-47 193.7 372 41.1
arahy.Tifrunner.gnm1.ann1.S92YTY Arachis hypogaea HOM05D002024 ORTHO05D004352 1.0e-46 191.4 275 45.1
Lj2g0020360 Lotus japonicus HOM05D002024 ORTHO05D004352 1.4e-46 191.0 275 45.1
TWI60G0427 Tripterygium wilfordii HOM05D002024 ORTHO05D004352 1.4e-46 191.0 354 40.4
Glyma.05G089300 Glycine max HOM05D002024 ORTHO05D004352 4.0e-46 189.5 272 45.2
Potri.013G062800 Populus trichocarpa HOM05D002024 ORTHO05D004352 2.0e-45 187.2 343 42.9
Sabra13G0056000 Salix brachista HOM05D002024 ORTHO05D004352 9.8e-45 184.9 347 41.5
Cpa.g.sc161.19 Carica papaya HOM05D002024 ORTHO05D004352 1.3e-44 184.5 322 45.0
Ciclev10018753m.g Citrus clementina HOM05D002024 ORTHO05D004352 1.7e-44 184.1 296 46.6
Medtr6g027760 Medicago truncatula HOM05D002024 ORTHO05D004352 6.3e-44 182.2 318 39.6
Lalb_Chr06g0174121 Lupinus albus HOM05D002024 ORTHO05D004352 8.3e-44 181.8 262 44.7
Eucgr.A02131 Eucalyptus grandis HOM05D002024 ORTHO05D004352 1.4e-43 181.0 256 49.6
Phvul.004G073900 Phaseolus vulgaris HOM05D002024 ORTHO05D004352 1.8e-43 180.6 271 45.0
Migut.J00772 Erythranthe guttata HOM05D002024 ORTHO05D004352 3.1e-43 179.9 337 40.1
arahy.Tifrunner.gnm1.ann1.9M8SYH Arachis hypogaea HOM05D002024 ORTHO05D004352 5.4e-43 179.1 276 44.2
vmacro07561 Vaccinium macrocarpon HOM05D002024 ORTHO05D004352 7.0e-43 178.7 369 38.5
Duzib106G0860 Durio zibethinus HOM05D002024 ORTHO05D004352 1.2e-42 177.9 342 39.8
PGR042G1807 Punica granatum HOM05D002024 ORTHO05D004352 2.3e-41 173.7 290 44.5
Actinidia03934 Actinidia chinensis HOM05D002024 ORTHO05D004352 3.8e-41 172.9 384 37.8
Manes.08G154300 Manihot esculenta HOM05D002024 ORTHO05D004352 3.8e-41 172.9 346 41.9
TPR.G29868 Trifolium pratense HOM05D002024 ORTHO05D004352 3.8e-41 172.9 269 43.9
Sc22g0004540 Simmondsia chinensis HOM05D002024 ORTHO05D004352 1.5e-40 171.0 295 43.7
CSS0030941 Camellia sinensis var. sinensis HOM05D002024 ORTHO05D004352 2.5e-40 170.2 370 36.8
Cc06_g17310 Coffea canephora HOM05D002024 ORTHO05D004352 4.3e-40 169.5 261 45.6
Ca_25685_v3 Cicer arietinum L. HOM05D002024 ORTHO05D004352 5.6e-40 169.1 272 41.5
Psat1g090200 Pisum sativum HOM05D002024 ORTHO05D004352 1.6e-39 167.5 272 43.0
VMungo0464G1034 Vigna mungo HOM05D002024 ORTHO05D004352 8.0e-39 165.2 270 41.9
CSS0008621 Camellia sinensis var. sinensis HOM05D002024 ORTHO05D004352 1.0e-38 164.9 374 36.4
Rhsim03G0051100 Rhododendron simsii HOM05D002024 ORTHO05D004352 1.5e-37 161.0 374 37.2
Gorai.013G195500 Gossypium raimondii HOM05D002024 ORTHO05D004352 3.4e-37 159.8 311 39.9
Gohir.A13G164100 Gossypium hirsutum HOM05D002024 ORTHO05D004352 4.4e-37 159.5 311 39.5
Potri.019G038701 Populus trichocarpa HOM05D002024 ORTHO05D004352 7.5e-37 158.7 344 40.1
CsaV3_4G012120 Cucumis sativus L. HOM05D002024 ORTHO05D004352 2.2e-36 157.1 280 40.0
Gohir.D13G167000 Gossypium hirsutum HOM05D002024 ORTHO05D004352 4.9e-36 156.0 311 39.2
Sed0002714 Sechium edule HOM05D002024 ORTHO05D004352 1.8e-35 154.1 277 41.2
ClCG04G005460 Citrullus lanatus HOM05D002024 ORTHO05D004352 4.1e-35 152.9 274 40.5
MELO3C008822.2 Cucumis melo HOM05D002024 ORTHO05D004352 4.1e-35 152.9 383 34.7
Nitab4.5_0005685g0010 Nicotiana tabacum HOM05D002024 ORTHO05D004352 1.6e-34 151.0 378 36.0
Cc00_g10130 Coffea canephora HOM05D002024 ORTHO05D004352 2.0e-34 150.6 273 42.1
HanXRQChr07g0197171 Helianthus annuus HOM05D002024 ORTHO05D004352 1.7e-33 147.5 279 37.3
Aqoxy2G00589 Aquilegia oxysepala HOM05D002024 ORTHO05D004352 2.3e-33 147.1 253 42.3
EL10Ac5g11731 Beta vulgaris HOM05D002024 ORTHO05D004352 3.0e-33 146.7 388 34.0
Gorai.013G113400 Gossypium raimondii HOM05D002024 ORTHO05D004352 8.6e-33 145.2 364 36.3
Nitab4.5_0000098g0220 Nicotiana tabacum HOM05D002024 ORTHO05D004352 3.3e-32 143.3 379 34.6
Peaxi162Scf00905g00018 Petunia axillaris HOM05D002024 ORTHO05D004352 3.3e-32 143.3 301 37.9
PSO339G0006 Papaver somniferum HOM05D002024 ORTHO05D004352 9.5e-32 141.7 335 35.5
DCAR_009084 Daucus carota HOM05D002024 ORTHO05D004352 1.2e-31 141.4 240 41.2
PSO384G0657 Papaver somniferum HOM05D002024 ORTHO05D004352 6.2e-31 139.0 335 34.9
AUR62038435 Chenopodium quinoa HOM05D002024 ORTHO05D004352 1.0e-30 138.3 400 32.8
AUR62041184 Chenopodium quinoa HOM05D002024 ORTHO05D004352 1.0e-30 138.3 332 33.1
AL7G44760 Arabidopsis lyrata HOM05D002024 ORTHO05D004352 1.8e-30 137.5 273 38.1
SGA_v2.0_scaffold31G12789 Striga asiatica HOM05D002024 ORTHO05D004352 4.0e-30 136.3 359 35.9
Nn6g32382 Nelumbo nucifera HOM05D002024 ORTHO05D004352 6.8e-30 135.6 214 43.5
AT5G35910 Arabidopsis thaliana HOM05D002024 ORTHO05D004352 2.6e-29 133.7 338 34.0
ECA238G4379 Erigeron canadensis HOM05D002024 ORTHO05D004352 2.6e-29 133.7 297 36.4
Sp7g06250 Schrenkiella parvula HOM05D002024 ORTHO05D004352 3.4e-29 133.3 272 37.9
THA.LOC104804880 Tarenaya hassleriana HOM05D002024 ORTHO05D004352 9.8e-29 131.7 330 34.8
Thhalv10003636m.g Eutrema salsugineum HOM05D002024 ORTHO05D004352 2.2e-28 130.6 341 33.7
CARHR216730 Cardamine hirsuta HOM05D002024 ORTHO05D004352 3.7e-28 129.8 293 36.2
Carub.0007s3168 Capsella rubella HOM05D002024 ORTHO05D004352 4.9e-28 129.4 263 38.0
unitig_22.g5158 Utricularia gibba HOM05D002024 ORTHO05D004352 1.1e-27 128.3 250 37.6
ATR0697G132 Amborella trichopoda HOM05D002024 ORTHO05D004352 1.4e-27 127.9 273 37.0
HanXRQChr14g0453601 Helianthus annuus HOM05D002024 ORTHO05D004352 1.9e-27 127.5 272 36.4
Hund15117 Selenicereus undatus HOM05D002024 ORTHO05D004352 2.4e-27 127.1 310 37.7
A05p16460 Brassica napus HOM05D002024 ORTHO05D004352 4.1e-27 126.3 269 34.6
C06p17400 Brassica napus HOM05D002024 ORTHO05D004352 7.0e-27 125.6 268 34.7
BolC6t36935H Brassica oleracea HOM05D002024 ORTHO05D004352 7.0e-27 125.6 268 34.7
BraA05t20551Z Brassica rapa HOM05D002024 ORTHO05D004352 1.6e-26 124.4 267 35.2
BcaC08g44316 Brassica carinata HOM05D002024 ORTHO05D004352 4.6e-26 122.9 268 35.1
Aa31LG9G18040 Aethionema arabicum HOM05D002024 ORTHO05D004352 1.7e-25 120.9 274 35.4
BcaB02g08047 Brassica carinata HOM05D002024 ORTHO05D004352 3.0e-25 120.2 270 38.1
Sed0002639 Sechium edule HOM05D002024 ORTHO05D004352 5.0e-25 119.4 290 35.5
CAN.G809.7 Capsicum annuum HOM05D002024 ORTHO05D004352 4.3e-24 116.3 267 36.7
DCAR_013482 Daucus carota HOM05D002024 ORTHO05D004352 7.3e-24 115.5 318 31.4
MBI05_g12088_MAGBIO Magnolia biondii HOM05D002024 ORTHO05D004352 2.1e-23 114.0 253 36.8
THA.LOC104821442 Tarenaya hassleriana HOM05D002024 ORTHO05D004352 4.7e-23 112.8 292 34.2
Ah.02g115700 Amaranthus hybridus HOM05D002024 ORTHO05D004352 6.2e-23 112.5 321 32.1
Sopen10g008230 Solanum pennellii HOM05D002024 ORTHO05D004352 6.2e-23 112.5 276 34.8
Lsat_1_v5_gn_2_103580 Lactuca sativa HOM05D002024 ORTHO05D004352 1.8e-22 110.9 332 33.7
Solyc10g018520.1 Solanum lycopersicum HOM05D002024 ORTHO05D004352 1.8e-22 110.9 276 34.4
PGSC0003DMG400020924 Solanum tuberosum HOM05D002024 ORTHO05D004352 1.8e-22 110.9 275 34.2
Gohir.D13G101300 Gossypium hirsutum HOM05D002024 ORTHO05D004352 8.9e-22 108.6 316 33.9
CDE10G0566 Ceratophyllum demersum HOM05D002024 ORTHO05D004352 4.4e-21 106.3 293 34.1
CSS0014390 Camellia sinensis var. sinensis HOM05D002024 ORTHO05D004352 5.8e-21 105.9 315 32.1
CDE10G1351 Ceratophyllum demersum HOM05D002024 ORTHO05D004352 3.7e-20 103.2 271 34.7
BcaB02g08049 Brassica carinata HOM05D002024 ORTHO05D004352 1.6e-18 97.8 256 32.8
Gohir.A13G097300 Gossypium hirsutum HOM05D002024 ORTHO05D004352 3.5e-18 96.7 334 30.5
SGA_v2.0_scaffold112G31637 Striga asiatica HOM05D002024 ORTHO05D004352 3.7e-12 76.6 167 32.3
HPP92_007980 Vanilla planifolia HOM05D002024 ORTHO05D004352 8.4e-12 75.5 200 30.5
BcaC08g44317 Brassica carinata HOM05D002024 ORTHO05D004352 1.1e-11 75.1 226 34.5
Zm00001eb047500 Zea mays HOM05D002024 ORTHO05D004352 1.7e-09 67.8 251 30.7
TWI74G0117 Tripterygium wilfordii HOM05D002024 ORTHO05D004352 8.1e-07 58.9 60 51.7
Lj1C1068G14 Lonicera japonica HOM05D002024 ORTHO05D004352 5.2e-06 56.2 149 33.6


User provided reference genes

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