Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0496131 Rosa chinensis HOM05D000809 ORTHO05D007733 6.3e-82 307.4 154 100.0
FvH4_1g05310 Fragaria vesca HOM05D000809 ORTHO05D007733 2.9e-58 228.8 126 90.5
FAN19G0453 Fragaria x ananassa HOM05D000809 ORTHO05D007733 2.9e-58 228.8 126 90.5
FAN26G0422 Fragaria x ananassa HOM05D000809 ORTHO05D007733 2.9e-58 228.8 126 90.5
FAN26G2813 Fragaria x ananassa HOM05D000809 ORTHO05D007733 2.9e-58 228.8 126 90.5
RcHm_v2.0_Chr2g0091011 Rosa chinensis HOM05D000809 ORTHO05D007733 4.9e-58 228.0 126 89.7
Aqoxy7G01822 Aquilegia oxysepala HOM05D000809 ORTHO05D007733 3.5e-56 221.9 145 77.9
CANSAT56G3015 Cannabis sativa HOM05D000809 ORTHO05D007733 4.6e-56 221.5 145 77.9
COL.COLO4_34883 Corchorus olitorius HOM05D000809 ORTHO05D007733 1.3e-55 219.9 145 77.2
Actinidia32693 Actinidia chinensis HOM05D000809 ORTHO05D007733 5.0e-55 218.0 145 75.9
Prupe.7G227600 Prunus persica HOM05D000809 ORTHO05D007733 5.0e-55 218.0 145 77.2
Rhsim01G0091800 Rhododendron simsii HOM05D000809 ORTHO05D007733 5.0e-55 218.0 145 76.6
Gohir.D05G022766 Gossypium hirsutum HOM05D000809 ORTHO05D007733 8.6e-55 217.2 145 76.6
Gohir.D05G022900 Gossypium hirsutum HOM05D000809 ORTHO05D007733 8.6e-55 217.2 145 76.6
Gorai.009G023100 Gossypium raimondii HOM05D000809 ORTHO05D007733 8.6e-55 217.2 145 76.6
Cfa003287 Carpinus fangiana HOM05D000809 ORTHO05D007733 1.5e-54 216.5 145 75.9
vmacro20667 Vaccinium macrocarpon HOM05D000809 ORTHO05D007733 1.5e-54 216.5 145 75.9
MD15G1189200 Malus domestica HOM05D000809 ORTHO05D007733 1.9e-54 216.1 145 76.6
GSVIVG01015424001 Vitis vinifera HOM05D000809 ORTHO05D007733 1.9e-54 216.1 145 75.9
QL02p085975 Quercus lobata HOM05D000809 ORTHO05D007733 2.5e-54 215.7 145 75.9
Gohir.A05G021400 Gossypium hirsutum HOM05D000809 ORTHO05D007733 3.3e-54 215.3 145 75.9
Peaxi162Scf00546g00322 Petunia axillaris HOM05D000809 ORTHO05D007733 3.3e-54 215.3 148 74.3
PGR102G2432 Punica granatum HOM05D000809 ORTHO05D007733 3.3e-54 215.3 145 75.9
Haze_25686 Corylus avellana HOM05D000809 ORTHO05D007733 4.3e-54 214.9 145 75.2
Cpa.g.sc23.132 Carica papaya HOM05D000809 ORTHO05D007733 5.6e-54 214.5 145 75.2
Ca_25514_v3 Cicer arietinum L. HOM05D000809 ORTHO05D007733 5.6e-54 214.5 126 83.3
Nitab4.5_0001672g0130 Nicotiana tabacum HOM05D000809 ORTHO05D007733 5.6e-54 214.5 145 74.5
CDE04G2267 Ceratophyllum demersum HOM05D000809 ORTHO05D007733 7.3e-54 214.2 148 75.0
Duzib168G1885 Durio zibethinus HOM05D000809 ORTHO05D007733 7.3e-54 214.2 145 74.5
Nn2g11810 Nelumbo nucifera HOM05D000809 ORTHO05D007733 7.3e-54 214.2 145 75.9
CAN.G1710.9 Capsicum annuum HOM05D000809 ORTHO05D007733 9.5e-54 213.8 145 74.5
PGSC0003DMG400000383 Solanum tuberosum HOM05D000809 ORTHO05D007733 9.5e-54 213.8 145 74.5
THA.LOC104808749 Tarenaya hassleriana HOM05D000809 ORTHO05D007733 9.5e-54 213.8 126 82.5
Atru.chr7.1304 Acer truncatum HOM05D000809 ORTHO05D007733 1.2e-53 213.4 145 73.8
arahy.Tifrunner.gnm1.ann1.G2DL39 Arachis hypogaea HOM05D000809 ORTHO05D007733 1.2e-53 213.4 132 78.8
ECA238G4585 Erigeron canadensis HOM05D000809 ORTHO05D007733 1.2e-53 213.4 145 75.9
Glyma.07G089200 Glycine max HOM05D000809 ORTHO05D007733 1.2e-53 213.4 145 75.2
Glyma.09G187800 Glycine max HOM05D000809 ORTHO05D007733 1.2e-53 213.4 145 75.2
Manes.16G070800 Manihot esculenta HOM05D000809 ORTHO05D007733 1.2e-53 213.4 126 81.7
Thecc.09G114200 Theobroma cacao HOM05D000809 ORTHO05D007733 1.2e-53 213.4 126 82.5
Ah.10g029140 Amaranthus hybridus HOM05D000809 ORTHO05D007733 1.6e-53 213.0 126 81.7
CSS0004763 Camellia sinensis var. sinensis HOM05D000809 ORTHO05D007733 1.6e-53 213.0 145 75.2
CSS0005642 Camellia sinensis var. sinensis HOM05D000809 ORTHO05D007733 1.6e-53 213.0 145 75.2
CDE06G2677 Ceratophyllum demersum HOM05D000809 ORTHO05D007733 1.6e-53 213.0 126 83.3
Solyc12g007010.2 Solanum lycopersicum HOM05D000809 ORTHO05D007733 2.1e-53 212.6 145 73.8
Sopen12g002980 Solanum pennellii HOM05D000809 ORTHO05D007733 2.1e-53 212.6 145 73.8
VMungo0464G1974 Vigna mungo HOM05D000809 ORTHO05D007733 2.1e-53 212.6 126 83.3
arahy.Tifrunner.gnm1.ann1.JACH1V Arachis hypogaea HOM05D000809 ORTHO05D007733 2.8e-53 212.2 126 81.7
Medtr6g086600 Medicago truncatula HOM05D000809 ORTHO05D007733 2.8e-53 212.2 126 82.5
TPR.G31450 Trifolium pratense HOM05D000809 ORTHO05D007733 3.6e-53 211.8 126 81.7
EL10Ac8g18530 Beta vulgaris HOM05D000809 ORTHO05D007733 4.7e-53 211.5 148 73.6
Lalb_Chr24g0397641 Lupinus albus HOM05D000809 ORTHO05D007733 4.7e-53 211.5 145 73.1
Oeu000378.3 Olea europaea HOM05D000809 ORTHO05D007733 4.7e-53 211.5 145 75.2
Phvul.004G160900 Phaseolus vulgaris HOM05D000809 ORTHO05D007733 4.7e-53 211.5 126 81.7
TAR624G0463 Trochodendron aralioides HOM05D000809 ORTHO05D007733 4.7e-53 211.5 145 73.1
CiPaw.03G234800 Carya illinoinensis HOM05D000809 ORTHO05D007733 6.1e-53 211.1 126 82.5
MELO3C025316.2 Cucumis melo HOM05D000809 ORTHO05D007733 6.1e-53 211.1 147 70.7
TWI34G1334 Tripterygium wilfordii HOM05D000809 ORTHO05D007733 6.1e-53 211.1 126 82.5
C07p56430 Brassica napus HOM05D000809 ORTHO05D007733 8.0e-53 210.7 126 81.7
BolC7t46122H Brassica oleracea HOM05D000809 ORTHO05D007733 8.0e-53 210.7 126 81.7
CsaV3_1G030840 Cucumis sativus L. HOM05D000809 ORTHO05D007733 8.0e-53 210.7 147 70.7
Nn8g39257 Nelumbo nucifera HOM05D000809 ORTHO05D007733 8.0e-53 210.7 126 81.7
Nitab4.5_0003537g0040 Nicotiana tabacum HOM05D000809 ORTHO05D007733 8.0e-53 210.7 145 73.8
MSTRG.10680 Avicennia marina HOM05D000809 ORTHO05D007733 1.0e-52 210.3 145 73.8
Lj2g0016022 Lotus japonicus HOM05D000809 ORTHO05D007733 1.4e-52 209.9 126 81.0
BcaC06g32603 Brassica carinata HOM05D000809 ORTHO05D007733 1.8e-52 209.5 126 81.0
Ciclev10007988m.g Citrus clementina HOM05D000809 ORTHO05D007733 1.8e-52 209.5 145 73.1
Lsat_1_v5_gn_8_93401 Lactuca sativa HOM05D000809 ORTHO05D007733 1.8e-52 209.5 145 73.8
Thhalv10002483m.g Eutrema salsugineum HOM05D000809 ORTHO05D007733 2.3e-52 209.1 126 80.2
Potri.018G076600 Populus trichocarpa HOM05D000809 ORTHO05D007733 2.3e-52 209.1 147 72.1
TWI63G1087 Tripterygium wilfordii HOM05D000809 ORTHO05D007733 2.3e-52 209.1 126 81.0
Zm00001eb089070 Zea mays HOM05D000809 ORTHO05D007733 2.3e-52 209.1 126 80.2
A03p58410 Brassica napus HOM05D000809 ORTHO05D007733 4.0e-52 208.4 126 80.2
BraA03t14902Z Brassica rapa HOM05D000809 ORTHO05D007733 4.0e-52 208.4 126 80.2
AUR62011020 Chenopodium quinoa HOM05D000809 ORTHO05D007733 4.0e-52 208.4 129 79.1
Sc08g0007210 Simmondsia chinensis HOM05D000809 ORTHO05D007733 4.0e-52 208.4 127 80.3
PSO063G5751 Papaver somniferum HOM05D000809 ORTHO05D007733 5.2e-52 208.0 145 74.5
PSO782G1122 Papaver somniferum HOM05D000809 ORTHO05D007733 5.2e-52 208.0 145 74.5
Sp3g24440 Schrenkiella parvula HOM05D000809 ORTHO05D007733 5.2e-52 208.0 126 80.2
SpUn0651_0010 Schrenkiella parvula HOM05D000809 ORTHO05D007733 5.2e-52 208.0 126 80.2
SalBow1G2443 Salvia bowleyana HOM05D000809 ORTHO05D007733 6.8e-52 207.6 145 72.4
TAR626G0858 Trochodendron aralioides HOM05D000809 ORTHO05D007733 6.8e-52 207.6 145 72.4
unitig_899.g15426 Utricularia gibba HOM05D000809 ORTHO05D007733 6.8e-52 207.6 126 79.4
Eucgr.C03953 Eucalyptus grandis HOM05D000809 ORTHO05D007733 8.9e-52 207.2 127 79.5
Aa31LG8G11120 Aethionema arabicum HOM05D000809 ORTHO05D007733 1.2e-51 206.8 126 79.4
HanXRQChr05g0137991 Helianthus annuus HOM05D000809 ORTHO05D007733 1.2e-51 206.8 145 73.1
ATR0037G048 Amborella trichopoda HOM05D000809 ORTHO05D007733 1.5e-51 206.5 126 78.6
Carub.0003s2473 Capsella rubella HOM05D000809 ORTHO05D007733 1.5e-51 206.5 145 71.7
CARHR100520 Cardamine hirsuta HOM05D000809 ORTHO05D007733 1.5e-51 206.5 126 78.6
Cc06_g09380 Coffea canephora HOM05D000809 ORTHO05D007733 1.5e-51 206.5 126 79.4
Sed0012141 Sechium edule HOM05D000809 ORTHO05D007733 2.6e-51 205.7 145 69.7
Lj7C645G9 Lonicera japonica HOM05D000809 ORTHO05D007733 4.4e-51 204.9 126 80.2
SGA_v2.0_scaffold109G31030 Striga asiatica HOM05D000809 ORTHO05D007733 4.4e-51 204.9 145 71.0
Psat1g039560 Pisum sativum HOM05D000809 ORTHO05D007733 5.8e-51 204.5 126 79.4
AL3G39860 Arabidopsis lyrata HOM05D000809 ORTHO05D007733 7.5e-51 204.1 126 78.6
AT3G24430 Arabidopsis thaliana HOM05D000809 ORTHO05D007733 7.5e-51 204.1 126 78.6
HPP92_006444 Vanilla planifolia HOM05D000809 ORTHO05D007733 9.8e-51 203.8 126 79.4
ClCG06G010380 Citrullus lanatus HOM05D000809 ORTHO05D007733 6.4e-50 201.1 156 66.0
Migut.K00460 Erythranthe guttata HOM05D000809 ORTHO05D007733 6.4e-50 201.1 145 71.0
DCAR_012086 Daucus carota HOM05D000809 ORTHO05D007733 1.1e-49 200.3 126 77.8
Sabra18G0064600 Salix brachista HOM05D000809 ORTHO05D007733 3.2e-49 198.7 157 66.2
AUR62033393 Chenopodium quinoa HOM05D000809 ORTHO05D007733 9.2e-49 197.2 139 71.9
Hund09189 Selenicereus undatus HOM05D000809 ORTHO05D007733 3.9e-47 191.8 154 64.9
SEGI_18085 Sequoiadendron giganteum HOM05D000809 ORTHO05D007733 1.5e-46 189.9 126 73.0
Mapoly0100s0060 Marchantia polymorpha HOM05D000809 ORTHO05D007733 2.5e-46 189.1 148 62.2
Eucgr.C04130 Eucalyptus grandis HOM05D000809 ORTHO05D007733 3.6e-45 185.3 145 66.9
MD02G1056300 Malus domestica HOM05D000809 ORTHO05D007733 1.8e-44 183.0 145 69.0
SMO118G0383 Selaginella moellendorffii HOM05D000809 ORTHO05D007733 1.5e-43 179.9 126 66.7
Pp3c19_20070 Physcomitrium patens HOM05D000809 ORTHO05D007733 2.9e-42 175.6 127 65.4
CBR_g30185 Chara braunii HOM05D000809 ORTHO05D007733 1.9e-41 172.9 127 64.6
Eucgr.C03960 Eucalyptus grandis HOM05D000809 ORTHO05D007733 1.9e-41 172.9 111 76.6
Os01g0719700 Oryza sativa ssp. japonica HOM05D000809 ORTHO05D007733 3.5e-32 142.1 85 80.0
Actinidia07419 Actinidia chinensis HOM05D000809 ORTHO05D007733 4.6e-32 141.7 148 58.1
Pp3c8_23290 Physcomitrium patens HOM05D000809 ORTHO05D007733 2.9e-26 122.5 123 50.4
Eucgr.C03955 Eucalyptus grandis HOM05D000809 ORTHO05D007733 8.7e-23 110.9 70 75.7
Oeu013437.1 Olea europaea HOM05D000396 ORTHO05D007733 1.5e-19 100.1 60 81.7
AagrBONN_evm.TU.Sc2ySwM_344.1144 Anthoceros agrestis HOM05D009372 ORTHO05D013436 4.9e-18 95.1 62 69.4
Cre01.g045902 Chlamydomonas reinhardtii HOM05D000809 ORTHO05D007733 2.1e-16 89.7 129 41.1
PRCOL_00006186 Prasinoderma coloniale HOM05D000809 ORTHO05D007733 6.0e-16 88.2 138 39.1
AagrBONN_evm.TU.Sc2ySwM_187.2 Anthoceros agrestis HOM05D009372 ORTHO05D013436 2.6e-11 72.8 48 68.8
Dinv36606 Davidia involucrata HOM05D000809 ORTHO05D007733 5.8e-11 71.6 41 82.9
Eucgr.C04131 Eucalyptus grandis HOM05D000809 ORTHO05D007733 5.8e-11 71.6 43 74.4
MCO05G106 Micromonas commoda HOM05D000809 ORTHO05D007733 2.2e-10 69.7 139 36.0
RcHm_v2.0_Chr2g0147101 Rosa chinensis HOM05D000809 ORTHO05D007733 3.8e-10 68.9 48 79.2
Gorai.001G260200 Gossypium raimondii HOM05D000809 ORTHO05D016264 1.1e-09 67.4 56 60.7
Gohir.A12G059950 Gossypium hirsutum HOM05D000809 ORTHO05D016264 5.5e-09 65.1 56 58.9
Gohir.D10G166101 Gossypium hirsutum HOM05D000809 ORTHO05D016264 5.5e-09 65.1 56 58.9
AagrBONN_evm.TU.Sc2ySwM_340.881 Anthoceros agrestis HOM05D000809 ORTHO05D023486 1.2e-08 63.9 42 66.7
AagrBONN_evm.TU.Sc2ySwM_344.2654 Anthoceros agrestis HOM05D000809 ORTHO05D023486 1.2e-08 63.9 40 67.5


User provided reference genes

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