Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 0.0e+00 1864.0 958 100.0
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 0.0e+00 1564.7 936 87.3
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 0.0e+00 1547.3 947 85.9
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 0.0e+00 1540.8 970 83.8
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 0.0e+00 1182.5 945 67.9
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 0.0e+00 1168.3 968 66.3
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 0.0e+00 1144.8 952 65.0
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 0.0e+00 1116.7 1007 61.8
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 0.0e+00 1110.5 949 63.3
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 0.0e+00 1102.4 949 62.8
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 0.0e+00 1088.9 951 62.4
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 1.7e-289 999.6 945 59.4
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 4.5e-287 991.5 954 59.1
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 5.5e-285 984.6 960 58.0
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 1.0e-283 980.3 908 58.7
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 3.3e-282 975.3 959 56.9
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 5.9e-279 964.5 960 56.8
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 1.3e-273 946.8 954 57.2
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 3.7e-273 945.3 882 58.4
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 2.7e-271 939.1 956 54.9
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 2.9e-270 935.6 948 54.7
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 1.9e-269 932.9 957 56.2
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 1.2e-268 930.2 867 58.5
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 3.0e-267 925.6 960 55.5
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 6.8e-267 924.5 947 56.4
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 4.4e-266 921.8 868 59.9
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 5.7e-266 921.4 954 55.1
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 1.4e-264 916.8 950 55.9
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 5.4e-264 914.8 953 55.3
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 7.0e-264 914.4 973 54.0
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 3.8e-262 908.7 959 55.1
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 1.2e-260 903.7 948 55.3
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 2.3e-259 899.4 960 54.3
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 1.2e-258 897.1 952 53.6
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 2.9e-257 892.5 965 52.8
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 2.9e-257 892.5 947 54.2
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 2.9e-257 892.5 948 54.5
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 3.7e-257 892.1 947 54.3
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 4.1e-256 888.6 952 54.1
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 7.0e-256 887.9 976 51.8
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 9.2e-256 887.5 866 58.4
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 1.6e-255 886.7 868 58.1
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 3.5e-255 885.6 950 53.3
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 3.9e-254 882.1 954 52.7
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 9.5e-253 877.5 973 51.0
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 2.8e-252 875.9 953 52.5
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 3.6e-252 875.5 959 53.1
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 6.2e-252 874.8 955 51.9
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 8.0e-252 874.4 944 53.3
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 2.4e-248 862.8 979 51.9
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 1.1e-245 854.0 949 52.8
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 7.3e-245 851.3 941 52.3
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 1.2e-244 850.5 880 53.4
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 1.5e-242 843.6 891 53.1
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 5.8e-242 841.6 863 55.7
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 3.2e-240 835.9 964 51.2
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 4.1e-240 835.5 959 50.7
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 7.3e-237 824.7 960 51.0
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 4.0e-235 818.9 959 51.1
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 2.0e-234 816.6 900 52.2
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 1.1e-232 810.8 950 49.6
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 2.4e-232 809.7 959 48.4
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 6.0e-231 805.1 948 49.2
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 2.5e-229 799.7 951 48.5
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 3.3e-229 799.3 729 59.3
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 3.6e-228 795.8 960 48.2
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 1.4e-227 793.9 739 58.6
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 6.9e-227 791.6 868 52.1
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 1.2e-226 790.8 967 48.7
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 2.3e-222 776.5 946 47.6
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 2.8e-220 769.6 998 46.1
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 8.1e-220 768.1 956 47.4
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 1.4e-219 767.3 890 50.1
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 1.4e-219 767.3 952 47.2
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 1.8e-219 766.9 944 46.9
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 2.4e-219 766.5 893 49.4
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 1.5e-218 763.8 951 47.4
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 4.9e-217 758.8 946 47.0
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 1.1e-216 757.7 868 49.5
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 2.4e-216 756.5 477 82.2
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 1.6e-215 753.8 869 50.4
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 2.1e-215 753.4 975 45.9
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 7.9e-215 751.5 966 45.4
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 8.7e-214 748.0 957 45.9
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 3.1e-211 739.6 954 46.4
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 5.3e-211 738.8 954 46.8
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 2.7e-207 726.5 879 49.0
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 5.1e-206 722.2 993 44.5
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 1.1e-205 721.1 723 54.8
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 1.3e-204 717.6 921 47.7
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 4.0e-203 712.6 867 49.3
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 3.4e-202 709.5 873 48.5
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 6.5e-201 705.3 957 44.6
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 1.3e-196 691.0 943 45.0
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 3.7e-196 689.5 908 44.7
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 6.3e-196 688.7 696 55.2
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 8.2e-188 661.8 625 57.0
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 9.1e-187 658.3 709 53.6
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 5.1e-182 642.5 670 52.4
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 4.8e-180 636.0 984 42.4
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 3.2e-168 596.7 877 44.1
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 5.3e-163 579.3 724 48.1
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 4.7e-143 513.1 989 35.6
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 1.5e-141 508.1 863 38.8
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 2.7e-138 497.3 871 38.0
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 4.3e-136 490.0 1029 35.0
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 4.4e-133 479.9 800 38.5
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 5.3e-110 403.3 1069 31.2
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 6.9e-102 376.3 299 62.5
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 1.4e-62 245.7 941 27.5
FAN26G2035 Fragaria x ananassa HOM05D006375 ORTHO05D008188 3.0e-49 201.4 165 72.1
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 2.4e-46 191.8 849 24.3
Peaxi162Scf00305g00615 Petunia axillaris HOM05D006375 ORTHO05D008188 4.7e-42 177.6 264 42.0
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 2.6e-40 171.8 352 31.2
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 1.7e-36 159.1 256 35.2
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 4.1e-30 137.9 132 52.3
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 2.1e-26 125.6 326 27.6
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 4.1e-22 111.3 311 27.3
CAN.G222.26 Capsicum annuum HOM05D006375 ORTHO05D008188 5.0e-20 104.4 192 37.5
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 3.7e-15 88.2 138 29.7
SHI25356 Sapria himalayana HOM05D006375 ORTHO05D008188 2.4e-14 85.5 85 52.9
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 1.3e-12 79.7 109 43.1


User provided reference genes

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