Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0492051 Rosa chinensis HOM05D005084 ORTHO05D043464 5.3e-37 157.1 77 100.0
RcHm_v2.0_Chr1g0380131 Rosa chinensis HOM05D005084 ORTHO05D006254 1.2e-17 92.8 51 90.2
FAN01G1592 Fragaria x ananassa HOM05D005084 ORTHO05D006254 2.7e-17 91.7 51 86.3
FAN06G2664 Fragaria x ananassa HOM05D005084 ORTHO05D006254 2.7e-17 91.7 51 86.3
FAN06G3876 Fragaria x ananassa HOM05D005084 ORTHO05D006254 2.7e-17 91.7 51 86.3
FvH4_7g31060 Fragaria vesca HOM05D005084 ORTHO05D006254 6.1e-17 90.5 51 84.3
FAN10G0156 Fragaria x ananassa HOM05D005084 ORTHO05D006254 6.1e-17 90.5 51 84.3
FAN10G3897 Fragaria x ananassa HOM05D005084 ORTHO05D006254 6.1e-17 90.5 51 84.3
FAN03G2915 Fragaria x ananassa HOM05D005084 ORTHO05D006254 2.3e-16 88.6 51 84.3
Prupe.2G307500 Prunus persica HOM05D005084 ORTHO05D006254 6.7e-16 87.0 51 82.4
Dinv28334 Davidia involucrata HOM05D005084 ORTHO05D006254 4.3e-15 84.3 53 75.5
Dinv35309 Davidia involucrata HOM05D005084 ORTHO05D006254 7.4e-15 83.6 51 76.5
QL09p010880 Quercus lobata HOM05D005084 ORTHO05D006254 9.7e-15 83.2 51 76.5
GSVIVG01028717001 Vitis vinifera HOM05D005084 ORTHO05D006254 6.3e-14 80.5 51 74.5
Haze_00097 Corylus avellana HOM05D005084 ORTHO05D006254 1.1e-13 79.7 51 74.5
Haze_00115 Corylus avellana HOM05D005084 ORTHO05D006254 1.4e-13 79.3 51 74.5
MD07G1285600 Malus domestica HOM05D005084 ORTHO05D006254 1.4e-13 79.3 51 74.5
Cfa016364 Carpinus fangiana HOM05D005084 ORTHO05D006254 4.1e-13 77.8 51 74.5
Actinidia34200 Actinidia chinensis HOM05D005084 ORTHO05D006254 5.3e-13 77.4 51 72.5
Thecc.03G193300 Theobroma cacao HOM05D005084 ORTHO05D006254 6.9e-13 77.0 51 70.6
CSS0047578 Camellia sinensis var. sinensis HOM05D005084 ORTHO05D006254 9.1e-13 76.6 51 74.5
Cpa.g.sc3.54 Carica papaya HOM05D005084 ORTHO05D006254 1.2e-12 76.3 51 70.6
arahy.Tifrunner.gnm1.ann1.77AFJV Arachis hypogaea HOM05D005084 ORTHO05D006254 3.4e-12 74.7 51 70.6
arahy.Tifrunner.gnm1.ann1.AT7H7M Arachis hypogaea HOM05D005084 ORTHO05D006254 3.4e-12 74.7 51 70.6
Atru.chr1.253 Acer truncatum HOM05D005084 ORTHO05D006254 5.9e-12 73.9 51 72.5
CiPaw.06G007800 Carya illinoinensis HOM05D005084 ORTHO05D006254 5.9e-12 73.9 51 66.7
Duzib205G0306 Durio zibethinus HOM05D005084 ORTHO05D006254 5.9e-12 73.9 51 72.5
Manes.06G157400 Manihot esculenta HOM05D005084 ORTHO05D006254 5.9e-12 73.9 51 68.6
MBI07_g26938_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 7.7e-12 73.6 51 68.6
Sed0009531 Sechium edule HOM05D005084 ORTHO05D006254 7.7e-12 73.6 51 66.7
TAR374G1373 Trochodendron aralioides HOM05D005084 ORTHO05D006254 7.7e-12 73.6 51 70.6
CSS0033126 Camellia sinensis var. sinensis HOM05D005084 ORTHO05D006254 1.0e-11 73.2 51 70.6
Hma1.2p1_1655F.1_g295960 Hydrangea macrophylla HOM05D005084 ORTHO05D006254 1.0e-11 73.2 51 70.6
TAR374G0350 Trochodendron aralioides HOM05D005084 ORTHO05D006254 1.0e-11 73.2 51 70.6
Ciclev10004760m.g Citrus clementina HOM05D005084 ORTHO05D006254 1.7e-11 72.4 51 72.5
CsaV3_3G021990 Cucumis sativus L. HOM05D005084 ORTHO05D006254 1.7e-11 72.4 51 64.7
Glyma.04G238200 Glycine max HOM05D005084 ORTHO05D006254 2.2e-11 72.0 51 66.7
ClCG05G008730 Citrullus lanatus HOM05D005084 ORTHO05D006254 2.9e-11 71.6 51 62.7
MELO3C026931.2 Cucumis melo HOM05D005084 ORTHO05D006254 2.9e-11 71.6 51 62.7
Lj1g0020917 Lotus japonicus HOM05D005084 ORTHO05D006254 3.8e-11 71.2 51 66.7
MD01G1215400 Malus domestica HOM05D005084 ORTHO05D006254 3.8e-11 71.2 50 70.0
Potri.015G022100 Populus trichocarpa HOM05D005084 ORTHO05D006254 3.8e-11 71.2 51 66.7
PGSC0003DMG400009072 Solanum tuberosum HOM05D005084 ORTHO05D006254 3.8e-11 71.2 51 64.7
CAN.G108.31 Capsicum annuum HOM05D005084 ORTHO05D006254 5.0e-11 70.9 51 64.7
Gohir.A12G251600 Gossypium hirsutum HOM05D005084 ORTHO05D006254 5.0e-11 70.9 51 64.7
Gohir.D12G252400 Gossypium hirsutum HOM05D005084 ORTHO05D006254 5.0e-11 70.9 51 64.7
Gorai.008G270500 Gossypium raimondii HOM05D005084 ORTHO05D006254 5.0e-11 70.9 51 64.7
Peaxi162Scf00904g00132 Petunia axillaris HOM05D005084 ORTHO05D006254 5.0e-11 70.9 51 64.7
Sabra15G0016500 Salix brachista HOM05D005084 ORTHO05D006254 5.0e-11 70.9 51 64.7
CANSAT21G1247 Cannabis sativa HOM05D005084 ORTHO05D006254 6.5e-11 70.5 51 68.6
MBI07_g14395_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 6.5e-11 70.5 50 68.0
TAR375G1058 Trochodendron aralioides HOM05D005084 ORTHO05D006254 8.5e-11 70.1 51 60.8
Phvul.009G137600 Phaseolus vulgaris HOM05D005084 ORTHO05D006254 1.1e-10 69.7 51 66.7
Solyc03g007370.3 Solanum lycopersicum HOM05D005084 ORTHO05D006254 1.1e-10 69.7 51 64.7
Oeu049102.1 Olea europaea HOM05D005084 ORTHO05D006254 1.4e-10 69.3 51 62.7
COL.COLO4_35652 Corchorus olitorius HOM05D005084 ORTHO05D006254 2.5e-10 68.6 51 60.8
Glyma.06G125700 Glycine max HOM05D005084 ORTHO05D006254 2.5e-10 68.6 51 62.7
Oeu039181.1 Olea europaea HOM05D005084 ORTHO05D006254 2.5e-10 68.6 51 62.7
Manes.14G018500 Manihot esculenta HOM05D005084 ORTHO05D006254 3.2e-10 68.2 51 62.7
Medtr3g090900 Medicago truncatula HOM05D005084 ORTHO05D006254 3.2e-10 68.2 51 64.7
Nitab4.5_0002589g0060 Nicotiana tabacum HOM05D005084 ORTHO05D006254 3.2e-10 68.2 51 60.8
Sp2g23190 Schrenkiella parvula HOM05D005084 ORTHO05D006254 3.2e-10 68.2 51 66.7
Sopen03g003330 Solanum pennellii HOM05D005084 ORTHO05D006254 3.2e-10 68.2 51 62.7
Lj3A910T45 Lonicera japonica HOM05D005084 ORTHO05D006254 4.2e-10 67.8 49 63.3
MSTRG.60 Avicennia marina HOM05D005084 ORTHO05D006254 5.5e-10 67.4 51 60.8
Nn3g19059 Nelumbo nucifera HOM05D005084 ORTHO05D006254 5.5e-10 67.4 49 61.2
Nitab4.5_0014729g0010 Nicotiana tabacum HOM05D005084 ORTHO05D006254 5.5e-10 67.4 51 60.8
PGR042G2574 Punica granatum HOM05D005084 ORTHO05D006254 5.5e-10 67.4 51 60.8
Hund04833 Selenicereus undatus HOM05D005084 ORTHO05D006254 5.5e-10 67.4 51 58.8
Sc19g0001140 Simmondsia chinensis HOM05D005084 ORTHO05D006254 5.5e-10 67.4 51 60.8
THA.LOC104801874 Tarenaya hassleriana HOM05D005084 ORTHO05D006254 5.5e-10 67.4 51 62.7
MSTRG.8499 Avicennia marina HOM05D005084 ORTHO05D006254 7.2e-10 67.0 51 64.7
DCAR_014530 Daucus carota HOM05D002314 ORTHO05D006254 7.2e-10 67.0 51 62.7
Psat5g079640 Pisum sativum HOM05D005084 ORTHO05D006254 7.2e-10 67.0 51 60.8
Sabra12G0020700 Salix brachista HOM05D005084 ORTHO05D006254 7.2e-10 67.0 51 62.7
AUR62006149 Chenopodium quinoa HOM05D005084 ORTHO05D006254 9.4e-10 66.6 51 58.8
AUR62019340 Chenopodium quinoa HOM05D005084 ORTHO05D006254 9.4e-10 66.6 51 58.8
Cc02_g01850 Coffea canephora HOM05D005084 ORTHO05D006254 1.2e-09 66.2 51 56.9
Lalb_Chr11g0066581 Lupinus albus HOM05D005084 ORTHO05D006254 1.2e-09 66.2 51 66.7
PSO135G0769 Papaver somniferum HOM05D005084 ORTHO05D006254 1.2e-09 66.2 51 60.8
TWI14G0873 Tripterygium wilfordii HOM05D005084 ORTHO05D006254 1.2e-09 66.2 51 60.8
TPR.G17303 Trifolium pratense HOM05D005084 ORTHO05D006254 1.6e-09 65.9 51 60.8
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 2.1e-09 65.5 52 59.6
Potri.012G031100 Populus trichocarpa HOM05D005084 ORTHO05D006254 2.1e-09 65.5 51 62.7
VMungo1309G1129 Vigna mungo HOM05D005084 ORTHO05D006254 2.1e-09 65.5 51 60.8
Aa31LG11G3390 Aethionema arabicum HOM05D005084 ORTHO05D006254 2.7e-09 65.1 51 58.8
BcaNung01211 Brassica carinata HOM05D005084 ORTHO05D006254 2.7e-09 65.1 51 60.8
Ca_16675_v3 Cicer arietinum L. HOM05D005084 ORTHO05D006254 2.7e-09 65.1 51 60.8
PSO384G3210 Papaver somniferum HOM05D005084 ORTHO05D006254 2.7e-09 65.1 51 58.8
vmacro06574 Vaccinium macrocarpon HOM05D005084 ORTHO05D006254 2.7e-09 65.1 51 58.8
Thhalv10004166m.g Eutrema salsugineum HOM05D005084 ORTHO05D006254 3.6e-09 64.7 51 62.7
Os05g0586600 Oryza sativa ssp. japonica HOM05D005084 ORTHO05D006254 4.6e-09 64.3 51 52.9
unitig_37.g12544 Utricularia gibba HOM05D005084 ORTHO05D006254 4.6e-09 64.3 51 56.9
Eucgr.A02665 Eucalyptus grandis HOM05D005084 ORTHO05D006254 6.1e-09 63.9 61 54.1
Aqoxy5G04167 Aquilegia oxysepala HOM05D005084 ORTHO05D006254 7.9e-09 63.5 51 58.8
AT5G24120 Arabidopsis thaliana HOM05D005084 ORTHO05D006254 7.9e-09 63.5 51 60.8
Migut.F01049 Erythranthe guttata HOM05D005084 ORTHO05D006254 7.9e-09 63.5 51 58.8
SalBow2G2003 Salvia bowleyana HOM05D005084 ORTHO05D006254 7.9e-09 63.5 50 60.0
AL6G35480 Arabidopsis lyrata HOM05D005084 ORTHO05D006254 1.0e-08 63.2 51 60.8
BcaNung01816 Brassica carinata HOM05D005084 ORTHO05D006254 1.0e-08 63.2 50 62.0
A06p34960 Brassica napus HOM05D005084 ORTHO05D006254 1.0e-08 63.2 50 62.0
C07p43590 Brassica napus HOM05D005084 ORTHO05D006254 1.0e-08 63.2 50 62.0
BolC7t44886H Brassica oleracea HOM05D005084 ORTHO05D006254 1.0e-08 63.2 50 62.0
BraA06t26420Z Brassica rapa HOM05D005084 ORTHO05D006254 1.0e-08 63.2 50 62.0
Migut.F00241 Erythranthe guttata HOM05D005084 ORTHO05D006254 1.0e-08 63.2 51 60.8
Glyma.14G160600 Glycine max HOM05D005084 ORTHO05D006254 1.0e-08 63.2 51 60.8
Carub.0006s2185 Capsella rubella HOM05D005084 ORTHO05D006254 1.4e-08 62.8 51 60.8
TWI23G1148 Tripterygium wilfordii HOM05D005084 ORTHO05D006254 1.4e-08 62.8 51 58.8
Rhsim03G0198900 Rhododendron simsii HOM05D005084 ORTHO05D006254 1.8e-08 62.4 51 54.9
CARHR189460 Cardamine hirsuta HOM05D005084 ORTHO05D006254 2.3e-08 62.0 51 58.8
BcaC04g23525 Brassica carinata HOM05D005084 ORTHO05D006254 3.0e-08 61.6 51 56.9
C09p07370 Brassica napus HOM05D005084 ORTHO05D006254 3.0e-08 61.6 51 56.9
BolC9t53651H Brassica oleracea HOM05D005084 ORTHO05D006254 3.0e-08 61.6 51 56.9
CDE09G0664 Ceratophyllum demersum HOM05D005084 ORTHO05D006254 3.0e-08 61.6 51 58.8
HanXRQChr07g0206551 Helianthus annuus HOM05D005084 ORTHO05D006254 3.0e-08 61.6 51 58.8
ECA238G2040 Erigeron canadensis HOM05D005084 ORTHO05D006254 3.9e-08 61.2 51 60.8
Lsat_1_v5_gn_4_164620 Lactuca sativa HOM05D005084 ORTHO05D006254 3.9e-08 61.2 51 56.9
Phvul.001G061400 Phaseolus vulgaris HOM05D005084 ORTHO05D006254 3.9e-08 61.2 51 60.8
Hund11680 Selenicereus undatus HOM05D005084 ORTHO05D006254 3.9e-08 61.2 49 55.1
A09p06600 Brassica napus HOM05D005084 ORTHO05D006254 6.7e-08 60.5 51 54.9
BraA09t36307Z Brassica rapa HOM05D005084 ORTHO05D006254 6.7e-08 60.5 51 54.9
Glyma.13G041200 Glycine max HOM05D005084 ORTHO05D006254 6.7e-08 60.5 51 58.8
CAN.G176.12 Capsicum annuum HOM05D005084 ORTHO05D043464 8.8e-08 60.1 52 57.7
unitig_46.g18814 Utricularia gibba HOM05D005084 ORTHO05D006254 8.8e-08 60.1 51 54.9
EL10Ac3g05344 Beta vulgaris HOM05D005084 ORTHO05D006254 3.3e-07 58.2 51 51.0
VMungo0647G2005 Vigna mungo HOM05D005084 ORTHO05D006254 4.4e-07 57.8 51 58.8
Zm00001eb297590 Zea mays HOM05D005084 ORTHO05D006254 4.4e-07 57.8 52 48.1
BcaB04g19836 Brassica carinata HOM05D005084 ORTHO05D006254 5.7e-07 57.4 50 56.0
TWI39G0830 Tripterygium wilfordii HOM05D005084 ORTHO05D006254 1.3e-06 56.2 51 52.9
CDE02G3800 Ceratophyllum demersum HOM05D000100 ORTHO05D000052 1.7e-06 55.8 43 58.1
RcHm_v2.0_Chr2g0159861 Rosa chinensis HOM05D005084 ORTHO05D342629 3.7e-06 54.7 35 80.0
CDE08G1386 Ceratophyllum demersum HOM05D005084 ORTHO05D006254 4.8e-06 54.3 51 52.9
HanXRQChr14g0462871 Helianthus annuus HOM05D005084 ORTHO05D006254 4.8e-06 54.3 48 58.3


User provided reference genes

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