Gene: Nitab4.5_0002589g0060
General Information
Structural Information
- Species Nicotiana tabacum
- Gene Identifier Nitab4.5_0002589g0060
- Transcript Identifier Nitab4.5_0002589g0060.1
- Gene Type Coding gene
- Location Nitab4.5_0002589 : 231209-236723 : positive
Gene Family Information
- ID HOM05D005084
- #Genes/#Species 147/94
- Phylogenetic origin
- ID ORTHO05D006254
- #Genes/#Species 145/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Nitab4.5_0002589g0060.1
- SR1-identifier Nta06g14480.1
Descriptions
- Description Winged helix-turn-helix DNA-binding domain, RNA polymerase sigma factor, region 2, RNA polymerase sigma-70 like domain, RNA polymerase sigma factor, region 3/4, RNA polymerase sigma-70 region 4, RNA polymerase sigma-70, RNA polymerase sigma-70 region 3, RNA polymerase sigma-70 region 2
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0071483 | ISO | PLAZA Integrative Orthology | cellular response to blue light | AT5G24120 |
| GO:0010114 | ISO | PLAZA Integrative Orthology | response to red light | AT5G24120 |
| GO:0045893 | ISO | PLAZA Integrative Orthology | positive regulation of transcription, DNA-templated | AT5G24120 |
| GO:0010218 | ISO | PLAZA Integrative Orthology | response to far red light | AT5G24120 |
| GO:0010207 | ISO | PLAZA Integrative Orthology | photosystem II assembly | AT5G24120 |
| GO:0071472 | ISO | PLAZA Integrative Orthology | cellular response to salt stress | AT5G24120 |
| GO:0009658 | ISO | PLAZA Integrative Orthology | chloroplast organization | AT5G24120 |
| GO:0009637 | ISO | PLAZA Integrative Orthology | response to blue light | AT5G24120 |
| GO:0009553 | ISO | PLAZA Integrative Orthology | embryo sac development | AT5G24120 |
| GO:2001141 | ISO | PLAZA Integrative Orthology | regulation of RNA biosynthetic process | AT5G24120 |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0006352 | IEA | InterPro | DNA-templated transcription, initiation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003899 | ISO | PLAZA Integrative Orthology | DNA-directed 5'-3' RNA polymerase activity | Os05g0586600 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G24120 |
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
| GO:0016987 | ISO | PLAZA Integrative Orthology | sigma factor activity | AT5G24120 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT5G24120 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT5G24120 |
| GO:0009536 | ISO | PLAZA Integrative Orthology | plastid | Os05g0586600 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR000943 | RNA polymerase sigma-70 |
| IPR013324 | RNA polymerase sigma factor, region 3/4-like |
| IPR014284 | RNA polymerase sigma-70 like domain |
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| IPR013325 | RNA polymerase sigma factor, region 2 |
| IPR007627 | RNA polymerase sigma-70 region 2 |
| IPR007630 | RNA polymerase sigma-70 region 4 |
| IPR007624 | RNA polymerase sigma-70 region 3 |
| Mapman id | Description |
|---|---|
| 15.6.2.1 | RNA biosynthesis.organelle machinery.transcriptional regulation.basal transcription factor (Sigma) |