Gene: FAN10G0156

General Information

Structural Information

  • Species Fragaria x ananassa
  • Gene Identifier FAN10G0156
  • Transcript Identifier FAN10G0156.1
  • Gene Type Coding gene
  • Location Fvb7-1 : 29393641-29395843 : positive

Gene Family Information

  • ID HOM05D005084
  • #Genes/#Species 147/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id maker-Fvb7-1-augustus-gene-294.33.v1.0.a1
  • pacid 50485102

Descriptions

  • Description K03093 - RNA polymerase sigma factor (SIGMA70)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071483
ISO
PLAZA Integrative Orthologycellular response to blue light AT5G24120
GO:0010114
ISO
PLAZA Integrative Orthologyresponse to red light AT5G24120
GO:0045893
ISO
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated AT5G24120
GO:0010218
ISO
PLAZA Integrative Orthologyresponse to far red light AT5G24120
GO:0010207
ISO
PLAZA Integrative Orthologyphotosystem II assembly AT5G24120
GO:0071472
ISO
PLAZA Integrative Orthologycellular response to salt stress AT5G24120
GO:0009658
ISO
PLAZA Integrative Orthologychloroplast organization AT5G24120
GO:0009637
ISO
PLAZA Integrative Orthologyresponse to blue light AT5G24120
GO:0009553
ISO
PLAZA Integrative Orthologyembryo sac development AT5G24120
GO:2001141
ISO
PLAZA Integrative Orthologyregulation of RNA biosynthetic process AT5G24120
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0006352
IEA
InterProDNA-templated transcription, initiation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003899
ISO
PLAZA Integrative OrthologyDNA-directed 5'-3' RNA polymerase activity Os05g0586600
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G24120
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0016987
ISO
PLAZA Integrative Orthologysigma factor activity AT5G24120

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT5G24120
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT5G24120
GO:0009536
ISO
PLAZA Integrative Orthologyplastid Os05g0586600

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000943 RNA polymerase sigma-70
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR007630 RNA polymerase sigma-70 region 4
IPR007627 RNA polymerase sigma-70 region 2
IPR013324 RNA polymerase sigma factor, region 3/4-like
IPR013325 RNA polymerase sigma factor, region 2
IPR007624 RNA polymerase sigma-70 region 3
IPR014284 RNA polymerase sigma-70 like domain
Mapman id Description
15.6.2.1 RNA biosynthesis.organelle machinery.transcriptional regulation.basal transcription factor (Sigma)