Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 1.5e-72 276.6 161 100.0
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 1.9e-64 249.6 151 95.4
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.9e-64 249.6 151 97.4
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.9e-64 249.6 151 97.4
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 9.5e-64 247.3 151 96.7
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 1.7e-60 236.5 146 84.2
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 8.3e-60 234.2 146 88.4
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 3.3e-56 222.2 175 80.0
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 7.3e-56 221.1 153 84.3
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.2e-55 220.3 134 94.0
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 3.6e-55 218.8 154 85.1
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 1.0e-54 217.2 148 84.5
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 1.4e-54 216.9 155 85.8
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 1.8e-54 216.5 153 85.0
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 1.8e-54 216.5 149 76.5
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 2.3e-54 216.1 159 79.2
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 6.8e-54 214.5 162 79.0
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 1.2e-53 213.8 165 81.2
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 1.2e-53 213.8 140 90.0
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 1.2e-53 213.8 158 82.9
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 1.5e-53 213.4 155 85.2
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 1.5e-53 213.4 141 90.1
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 2.0e-53 213.0 146 84.9
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 2.6e-53 212.6 175 74.9
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 3.4e-53 212.2 148 86.5
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 3.4e-53 212.2 146 83.6
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 4.4e-53 211.8 145 86.9
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 4.4e-53 211.8 148 82.4
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 5.7e-53 211.5 158 81.6
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 9.8e-53 210.7 145 80.0
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 1.3e-52 210.3 150 76.0
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.3e-52 210.3 146 80.1
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 2.9e-52 209.1 146 83.6
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 3.7e-52 208.8 173 76.3
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 4.9e-52 208.4 175 72.0
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 4.9e-52 208.4 139 87.8
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 4.9e-52 208.4 139 87.8
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 6.4e-52 208.0 150 84.0
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 6.4e-52 208.0 156 79.5
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 6.4e-52 208.0 170 71.2
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 8.3e-52 207.6 146 84.2
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 8.3e-52 207.6 145 84.8
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 8.3e-52 207.6 156 79.5
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 8.3e-52 207.6 156 79.5
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 1.1e-51 207.2 152 76.3
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 1.1e-51 207.2 152 84.2
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 1.4e-51 206.8 150 81.3
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.8e-51 206.5 139 87.1
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 2.4e-51 206.1 146 83.6
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 2.4e-51 206.1 165 76.4
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 2.4e-51 206.1 154 81.2
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 3.2e-51 205.7 172 76.2
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 3.2e-51 205.7 181 71.8
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 3.2e-51 205.7 139 86.3
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 3.2e-51 205.7 139 86.3
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 4.1e-51 205.3 160 78.8
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 4.1e-51 205.3 160 78.8
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 4.1e-51 205.3 150 78.7
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 4.1e-51 205.3 161 79.5
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 5.4e-51 204.9 152 81.6
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 5.4e-51 204.9 155 77.4
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 7.0e-51 204.5 160 71.2
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 9.2e-51 204.1 150 76.7
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 9.2e-51 204.1 139 85.6
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 9.2e-51 204.1 140 86.4
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 1.2e-50 203.8 183 72.1
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 1.2e-50 203.8 167 77.2
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 1.6e-50 203.4 169 76.3
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 1.6e-50 203.4 178 70.2
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 1.6e-50 203.4 173 69.4
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 1.6e-50 203.4 153 83.0
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 2.0e-50 203.0 155 76.1
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 2.7e-50 202.6 176 74.4
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 2.7e-50 202.6 180 75.0
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 2.7e-50 202.6 153 83.0
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 3.5e-50 202.2 148 81.1
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 5.9e-50 201.4 155 76.1
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 5.9e-50 201.4 155 76.1
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 5.9e-50 201.4 156 80.1
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 5.9e-50 201.4 158 74.7
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 7.8e-50 201.1 160 77.5
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 7.8e-50 201.1 159 74.2
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 7.8e-50 201.1 155 80.0
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 1.0e-49 200.7 142 83.1
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 1.0e-49 200.7 158 79.1
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 1.0e-49 200.7 185 69.7
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 1.0e-49 200.7 139 82.0
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 1.3e-49 200.3 150 76.0
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 1.7e-49 199.9 151 76.2
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 2.3e-49 199.5 191 70.7
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 2.3e-49 199.5 154 81.8
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 3.0e-49 199.1 135 75.6
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 3.0e-49 199.1 159 77.4
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 3.9e-49 198.7 150 83.3
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 3.9e-49 198.7 150 83.3
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 5.0e-49 198.4 192 67.7
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 5.0e-49 198.4 192 67.7
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 6.6e-49 198.0 159 77.4
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 6.6e-49 198.0 151 80.1
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 8.6e-49 197.6 165 74.5
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 8.6e-49 197.6 146 82.9
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 8.6e-49 197.6 102 88.2
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 1.1e-48 197.2 152 74.3
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 1.1e-48 197.2 156 79.5
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 1.5e-48 196.8 167 74.3
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 1.9e-48 196.4 115 83.5
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 2.5e-48 196.1 140 83.6
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 2.5e-48 196.1 154 76.0
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 3.3e-48 195.7 160 76.2
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 4.3e-48 195.3 192 66.7
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 4.3e-48 195.3 152 78.3
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 5.6e-48 194.9 155 74.2
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 5.6e-48 194.9 159 76.7
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 5.6e-48 194.9 159 76.7
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 5.6e-48 194.9 159 76.7
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 7.3e-48 194.5 153 75.8
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 9.5e-48 194.1 139 86.3
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 9.5e-48 194.1 171 75.4
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 1.2e-47 193.7 146 79.5
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 3.6e-47 192.2 162 76.5
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 4.7e-47 191.8 163 75.5
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 4.7e-47 191.8 159 69.8
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 1.1e-46 190.7 184 67.9
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 1.1e-46 190.7 121 79.3
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 1.1e-46 190.7 136 73.5
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 1.1e-46 190.7 111 84.7
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 1.1e-46 190.7 99 90.9
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 1.1e-46 190.7 153 76.5
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 2.3e-46 189.5 168 67.9
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 3.1e-46 189.1 141 82.3
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 3.1e-46 189.1 184 67.4
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 4.0e-46 188.7 113 78.8
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 1.5e-45 186.8 139 84.2
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 1.5e-45 186.8 139 84.2
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 3.4e-45 185.7 154 72.1
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 5.8e-45 184.9 108 78.7
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 1.7e-44 183.3 151 75.5
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 4.9e-44 181.8 153 74.5
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 6.4e-44 181.4 149 77.9
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 1.4e-43 180.3 91 92.3
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 5.4e-43 178.3 95 88.4
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 2.0e-42 176.4 104 84.6
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 4.6e-42 175.3 148 75.7
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 6.0e-42 174.9 113 73.5
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.1e-40 170.6 89 89.9
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 1.9e-40 169.9 117 70.1
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 5.6e-40 168.3 89 88.8
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 5.6e-40 168.3 113 77.9
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 2.0e-37 159.8 81 88.9
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 3.2e-35 152.5 147 68.7
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 3.5e-34 149.1 94 68.1
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 1.7e-33 146.7 127 63.0
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 4.7e-31 138.7 80 78.8
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 6.8e-30 134.8 125 61.6
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 9.2e-27 124.4 60 96.7
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 6.0e-26 121.7 76 67.1
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 2.8e-23 112.8 93 61.3
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 4.7e-23 112.1 57 93.0
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 2.9e-20 102.8 111 47.7
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 5.4e-19 98.6 109 50.5
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 1.2e-18 97.4 96 55.2
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 2.7e-18 96.3 49 85.7
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 4.6e-18 95.5 96 54.2
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 8.4e-12 74.7 75 56.0
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 2.4e-11 73.2 75 56.0
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 2.4e-11 73.2 75 56.0
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 3.2e-11 72.8 135 37.0
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 2.1e-10 70.1 75 54.7
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 2.1e-10 70.1 75 54.7
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 2.1e-10 70.1 75 54.7
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 5.1e-09 65.5 153 47.7
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 6.2e-07 58.5 35 74.3


User provided reference genes

Program Settings