Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 7.6e-242 840.1 433 100.0
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.1e-224 783.1 434 94.2
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 1.4e-224 782.7 434 94.2
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 9.7e-221 770.0 447 91.3
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.6e-220 769.2 444 91.4
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 5.0e-201 704.5 441 83.4
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 8.3e-188 660.6 447 80.1
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 1.8e-187 659.4 394 86.8
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 1.6e-186 656.4 455 76.5
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 1.6e-186 656.4 454 77.3
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 2.0e-186 656.0 448 76.1
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 3.5e-186 655.2 455 77.1
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 4.5e-186 654.8 453 77.3
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 3.8e-185 651.7 453 77.5
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 6.5e-185 651.0 458 76.0
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 2.5e-184 649.0 458 75.8
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 4.2e-184 648.3 455 75.8
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 9.4e-184 647.1 454 77.5
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 1.6e-183 646.4 447 76.3
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 1.4e-182 643.3 450 76.0
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 1.8e-182 642.9 448 76.6
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 5.2e-182 641.3 452 74.6
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.0e-181 639.4 446 76.5
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 7.5e-181 637.5 446 76.0
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 1.3e-180 636.7 451 74.1
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 2.2e-180 636.0 453 74.4
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 2.4e-179 632.5 454 75.8
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 4.1e-179 631.7 461 73.5
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 2.7e-178 629.0 452 73.5
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 3.5e-178 628.6 454 74.9
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.7e-177 626.3 454 75.6
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 1.1e-176 623.6 453 74.2
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 1.0e-174 617.1 446 73.3
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 1.0e-174 617.1 442 73.3
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 1.0e-174 617.1 448 73.0
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 5.2e-174 614.8 489 70.3
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 8.9e-174 614.0 446 72.9
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 2.0e-173 612.8 460 73.9
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 4.4e-173 611.7 443 74.5
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 4.4e-173 611.7 450 72.4
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 5.7e-173 611.3 446 73.3
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 2.8e-172 609.0 446 72.9
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 3.7e-172 608.6 449 73.5
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 4.9e-172 608.2 443 72.7
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 1.1e-171 607.1 448 73.4
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 1.4e-171 606.7 435 74.5
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 1.4e-171 606.7 444 72.5
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 3.1e-171 605.5 453 72.4
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 5.4e-171 604.7 450 71.8
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 2.0e-170 602.8 437 74.1
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 2.0e-170 602.8 420 76.4
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 2.7e-170 602.4 449 71.9
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 4.5e-170 601.7 454 72.9
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 4.5e-170 601.7 438 73.7
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 1.0e-169 600.5 447 72.5
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 2.9e-169 599.0 437 73.5
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 3.9e-169 598.6 452 70.6
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 6.6e-169 597.8 452 69.0
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 6.6e-169 597.8 464 69.6
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 6.6e-169 597.8 439 72.7
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 8.6e-169 597.4 447 71.4
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.5e-168 596.7 453 70.6
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 1.6e-167 593.2 441 69.8
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 3.6e-167 592.0 452 71.7
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 4.7e-167 591.7 452 69.9
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 2.3e-166 589.3 460 68.5
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 2.3e-166 589.3 444 70.9
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 5.2e-166 588.2 445 69.4
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 5.2e-166 588.2 445 69.4
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 8.9e-166 587.4 445 69.2
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 8.9e-166 587.4 440 71.4
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 2.0e-165 586.3 450 71.3
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 2.0e-165 586.3 446 69.5
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 3.4e-165 585.5 457 72.0
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 1.1e-163 580.5 445 68.1
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 2.4e-163 579.3 469 68.9
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 1.2e-162 577.0 447 67.1
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 4.6e-162 575.1 436 69.7
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 7.8e-162 574.3 436 69.7
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 1.0e-161 573.9 447 68.0
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 1.7e-161 573.2 436 69.5
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 3.0e-161 572.4 498 65.1
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 3.0e-161 572.4 441 69.6
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 1.1e-160 570.5 436 68.8
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 2.5e-160 569.3 447 67.1
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 1.4e-158 563.5 449 66.8
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 2.3e-158 562.8 450 68.2
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 4.0e-158 562.0 424 71.2
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 2.6e-157 559.3 445 66.5
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 3.4e-157 558.9 448 66.7
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 5.8e-157 558.1 444 66.7
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 7.5e-157 557.8 466 65.0
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 9.8e-157 557.4 448 66.5
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 2.9e-156 555.8 430 71.9
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 3.7e-156 555.4 452 68.6
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 1.4e-155 553.5 417 71.0
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 3.2e-155 552.4 456 68.6
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 4.1e-155 552.0 444 65.8
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 4.1e-155 552.0 449 65.7
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 7.0e-155 551.2 453 65.8
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 1.2e-154 550.4 453 67.3
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 2.1e-154 549.7 443 69.3
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 2.3e-153 546.2 445 65.8
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 3.0e-153 545.8 421 70.5
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 3.6e-151 538.9 441 65.5
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 8.1e-151 537.7 470 62.1
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 1.8e-150 536.6 446 65.7
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 1.0e-145 520.8 454 64.3
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 1.7e-145 520.0 455 64.0
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 1.6e-143 513.5 448 65.6
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 4.4e-141 505.4 453 65.6
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 4.6e-138 495.4 361 71.2
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 2.3e-137 493.0 421 64.8
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 5.1e-137 491.9 423 64.5
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 1.2e-133 480.7 410 64.9
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 9.9e-133 477.6 372 68.5
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 5.1e-129 465.3 405 62.7
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 9.0e-126 454.5 507 54.2
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 9.0e-126 454.5 482 58.5
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 1.9e-123 446.8 470 54.9
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 4.6e-122 442.2 396 61.6
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 1.0e-121 441.0 454 58.4
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 5.6e-120 435.3 419 60.9
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 1.3e-119 434.1 343 69.7
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 1.4e-115 420.6 474 50.4
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 2.5e-115 419.9 334 67.4
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 1.5e-112 410.6 504 48.0
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 7.6e-109 398.3 434 52.3
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 1.4e-102 377.5 488 45.5
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 9.0e-102 374.8 455 51.2
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 7.4e-96 355.1 254 70.1
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 9.7e-96 354.8 364 54.9
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 1.4e-89 334.3 332 57.8
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 3.5e-85 319.7 479 45.5
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 3.2e-83 313.2 482 41.3
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 9.1e-78 295.0 349 53.0
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 1.1e-75 288.1 370 46.2
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 7.2e-75 285.4 517 38.5
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 1.3e-60 238.0 247 57.9
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 2.3e-60 237.3 386 38.6
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 2.8e-58 230.3 173 67.1
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 5.7e-56 222.6 177 63.3
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 1.8e-54 217.6 178 62.9
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 4.6e-53 213.0 256 51.6
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 2.3e-52 210.7 130 78.5
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 3.3e-51 206.8 171 62.0
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 1.4e-46 191.4 385 36.6
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 6.6e-44 182.6 220 52.3
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 5.6e-43 179.5 262 40.5
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 7.3e-35 152.5 108 64.8
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 3.1e-33 147.1 352 33.0
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 4.1e-30 136.7 134 61.2
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 1.0e-28 132.1 140 49.3
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 1.9e-27 127.9 90 66.7
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 5.2e-25 119.8 149 53.7
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 1.5e-24 118.2 171 43.9
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 3.4e-24 117.1 133 57.9
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 5.8e-24 116.3 140 55.7
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 5.6e-19 99.8 82 68.3
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 1.6e-18 98.2 99 52.5
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 1.1e-17 95.5 326 26.7
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 1.4e-17 95.1 57 71.9
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 2.6e-16 90.9 169 44.4
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 7.1e-14 82.8 66 68.2
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 6.0e-13 79.7 199 35.7
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 3.3e-11 73.9 109 38.5
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 1.3e-10 72.0 117 47.0
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 4.5e-08 63.5 57 64.9
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 2.9e-07 60.8 39 74.4
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.9e-06 58.2 32 84.4
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 2.4e-06 57.8 42 61.9
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 2.4e-06 57.8 40 70.0


User provided reference genes

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