Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 0.0e+00 1259.2 703 100.0
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 8.1e-302 1040.0 703 85.2
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 3.1e-301 1038.1 703 85.2
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.8e-288 995.7 703 83.2
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.6e-278 962.6 678 81.6
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.6e-260 902.1 704 75.9
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 3.5e-220 768.8 732 64.2
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 8.1e-201 704.5 735 57.7
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 1.7e-190 670.2 741 55.1
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.9e-181 640.2 727 52.7
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 6.7e-179 631.7 735 51.2
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 7.4e-178 628.2 729 51.2
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 1.1e-176 624.4 734 50.7
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 4.2e-173 612.5 723 49.0
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 1.1e-170 604.4 717 49.0
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 9.0e-168 594.7 781 46.6
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 5.9e-167 592.0 792 49.4
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 2.2e-166 590.1 717 48.0
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 1.1e-165 587.8 775 47.5
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 1.1e-165 587.8 712 49.3
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 1.4e-165 587.4 739 49.1
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 1.9e-165 587.0 800 46.0
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 9.3e-165 584.7 775 47.2
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 4.6e-164 582.4 726 48.1
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 7.9e-164 581.6 732 49.2
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 1.9e-162 577.0 774 45.7
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 4.8e-161 572.4 774 47.7
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 1.1e-160 571.2 752 46.9
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 1.8e-160 570.5 770 47.1
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.4e-160 570.1 753 46.1
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 4.1e-160 569.3 723 48.5
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 1.5e-159 567.4 722 49.0
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 5.9e-159 565.5 775 46.8
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 1.7e-158 563.9 766 47.3
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 5.0e-158 562.4 714 47.2
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 1.4e-157 560.8 771 46.4
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 1.9e-157 560.5 772 46.0
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 3.2e-157 559.7 767 45.2
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 7.2e-157 558.5 725 48.7
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 7.2e-157 558.5 725 47.3
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 9.4e-157 558.1 765 46.3
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 2.1e-156 557.0 763 46.5
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 6.1e-156 555.4 776 45.9
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 3.3e-154 549.7 693 47.5
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 4.8e-153 545.8 771 45.8
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 8.2e-153 545.0 709 46.8
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 1.8e-152 543.9 766 44.0
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 1.2e-151 541.2 729 45.1
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 2.6e-151 540.0 732 46.6
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 3.4e-151 539.7 728 46.2
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 1.7e-150 537.3 728 45.5
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 3.8e-150 536.2 728 45.5
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 5.0e-150 535.8 766 43.7
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 7.2e-149 531.9 728 46.6
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 1.2e-148 531.2 709 47.8
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 2.7e-148 530.0 734 45.4
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 2.7e-148 530.0 706 47.7
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 1.0e-147 528.1 727 45.0
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 7.4e-146 521.9 772 44.6
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 4.8e-145 519.2 710 46.8
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 1.8e-144 517.3 847 40.0
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 1.2e-143 514.6 809 41.8
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 7.7e-143 511.9 817 42.4
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 7.7e-143 511.9 782 41.6
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 2.2e-142 510.4 724 43.8
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 2.9e-142 510.0 780 42.1
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 3.2e-141 506.5 771 42.0
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 4.2e-141 506.1 689 45.4
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 5.2e-139 499.2 826 40.9
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 5.2e-139 499.2 705 46.7
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 1.5e-138 497.7 773 42.0
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 3.3e-138 496.5 706 44.2
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 5.3e-136 489.2 704 45.2
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 2.0e-135 487.3 748 43.0
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 3.5e-135 486.5 715 44.6
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.6e-132 477.6 730 43.0
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 5.2e-131 472.6 715 43.1
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 8.3e-129 465.3 705 43.0
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 1.3e-126 458.0 621 46.4
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 5.5e-125 452.6 775 39.2
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 2.7e-124 450.3 792 39.1
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 2.3e-123 447.2 784 38.8
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 5.2e-123 446.0 791 39.1
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 6.8e-123 445.7 801 38.6
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 2.4e-120 437.2 729 39.6
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 2.9e-118 430.3 823 38.0
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 8.6e-118 428.7 824 38.5
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 4.7e-116 422.9 680 42.6
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 8.9e-115 418.7 705 40.3
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 7.5e-114 415.6 904 36.2
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 1.3e-113 414.8 707 40.6
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 1.3e-110 404.8 697 39.5
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 6.2e-108 396.0 703 39.7
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 1.4e-107 394.8 673 40.4
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 3.4e-106 390.2 853 34.9
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 2.2e-105 387.5 908 33.6
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 2.4e-104 384.0 891 34.5
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 1.2e-103 381.7 825 34.4
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 1.3e-102 378.3 534 44.6
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 3.6e-100 370.2 699 37.3
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 8.1e-100 369.0 566 43.3
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 6.2e-92 342.8 885 33.4
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 3.9e-86 323.6 761 34.4
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 2.4e-83 314.3 707 34.1
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 6.9e-83 312.8 719 35.3
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 1.2e-82 312.0 717 34.7
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 3.1e-75 287.3 692 32.7
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 2.3e-62 244.6 284 45.8
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 6.7e-62 243.0 248 55.6
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 1.5e-61 241.9 750 28.0
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.1e-59 235.7 706 30.7
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 5.8e-58 229.9 652 31.9
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 4.8e-52 210.3 712 27.0
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 1.8e-51 208.4 688 30.1
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.7e-49 201.8 273 42.5
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 4.2e-48 197.2 437 34.8
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 6.7e-46 189.9 713 32.0
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 6.7e-46 189.9 917 25.1
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 5.3e-43 180.3 181 50.3
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 7.9e-39 166.4 174 48.9
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 7.9e-39 166.4 174 48.9
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 2.4e-35 154.8 302 31.5
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 3.9e-30 137.5 238 39.5
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 3.3e-29 134.4 242 38.4
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 3.3e-29 134.4 82 81.7
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 1.1e-27 129.4 130 57.7
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 6.1e-23 113.6 126 48.4
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 2.7e-18 98.2 111 42.3
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 3.8e-17 94.4 95 53.7
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 5.0e-17 94.0 100 44.0
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 8.8e-14 83.2 98 49.0


User provided reference genes

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