Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0171371 Rosa chinensis HOM05D004777 ORTHO05D006240 6.7e-111 404.1 210 100.0
FvH4_6g50590 Fragaria vesca HOM05D004777 ORTHO05D006240 7.5e-102 374.0 209 93.3
FAN09G3008 Fragaria x ananassa HOM05D004777 ORTHO05D006240 6.3e-101 370.9 209 92.8
FAN14G1693 Fragaria x ananassa HOM05D004777 ORTHO05D006240 1.8e-100 369.4 210 92.9
FAN14G5049 Fragaria x ananassa HOM05D004777 ORTHO05D006240 1.8e-100 369.4 210 92.9
FAN05G4199 Fragaria x ananassa HOM05D004777 ORTHO05D006240 1.2e-99 366.7 220 89.1
Prupe.3G283500 Prunus persica HOM05D004777 ORTHO05D006240 4.4e-86 321.6 222 78.8
MD09G1035000 Malus domestica HOM05D004777 ORTHO05D006240 4.9e-77 291.6 220 72.3
MD17G1035100 Malus domestica HOM05D004777 ORTHO05D006240 7.1e-76 287.7 221 71.9
CiPaw.03G037400 Carya illinoinensis HOM05D004777 ORTHO05D006240 8.6e-74 280.8 219 72.1
QL02p076729 Quercus lobata HOM05D004777 ORTHO05D006240 1.5e-73 280.0 218 73.4
Manes.15G183100 Manihot esculenta HOM05D004777 ORTHO05D006240 1.2e-72 276.9 228 67.1
GSVIVG01032488001 Vitis vinifera HOM05D004777 ORTHO05D006240 8.1e-72 274.2 222 69.8
Dinv33499 Davidia involucrata HOM05D004777 ORTHO05D006240 1.1e-71 273.9 228 68.4
Eucgr.I01816 Eucalyptus grandis HOM05D004777 ORTHO05D006240 1.4e-71 273.5 234 66.2
Haze_14664 Corylus avellana HOM05D004777 ORTHO05D006240 3.1e-71 272.3 220 69.5
FAN14G3936 Fragaria x ananassa HOM05D004777 ORTHO05D006240 5.2e-71 271.6 207 74.9
Thecc.04G008400 Theobroma cacao HOM05D004777 ORTHO05D006240 5.2e-71 271.6 226 66.4
Gorai.006G029700 Gossypium raimondii HOM05D004777 ORTHO05D006240 6.8e-71 271.2 215 68.8
Duzib187G0683 Durio zibethinus HOM05D004777 ORTHO05D006240 1.2e-70 270.4 226 65.9
Cpa.g.sc186.15 Carica papaya HOM05D004777 ORTHO05D006240 3.4e-70 268.9 223 65.9
Gohir.D09G025500 Gossypium hirsutum HOM05D004777 ORTHO05D006240 7.5e-70 267.7 215 67.9
TWI56G1110 Tripterygium wilfordii HOM05D004777 ORTHO05D006240 9.9e-70 267.3 229 64.2
Gohir.D07G226300 Gossypium hirsutum HOM05D004777 ORTHO05D006240 1.7e-69 266.5 211 66.8
CANSAT64G2847 Cannabis sativa HOM05D004777 ORTHO05D006240 2.2e-69 266.2 229 65.1
Duzib147G0776 Durio zibethinus HOM05D004777 ORTHO05D006240 4.9e-69 265.0 178 78.1
Gorai.001G261200 Gossypium raimondii HOM05D004777 ORTHO05D006240 6.4e-69 264.6 211 65.9
arahy.Tifrunner.gnm1.ann1.8Y3CFZ Arachis hypogaea HOM05D004777 ORTHO05D006240 8.3e-69 264.2 186 74.7
Gohir.A07G219400 Gossypium hirsutum HOM05D004777 ORTHO05D006240 1.1e-68 263.8 211 67.3
CSS0014422 Camellia sinensis var. sinensis HOM05D004777 ORTHO05D006240 1.9e-68 263.1 216 68.5
CSS0014615 Camellia sinensis var. sinensis HOM05D004777 ORTHO05D006240 1.9e-68 263.1 216 68.5
vmacro18239 Vaccinium macrocarpon HOM05D004777 ORTHO05D006240 2.4e-68 262.7 223 69.1
arahy.Tifrunner.gnm1.ann1.8ZV6UW Arachis hypogaea HOM05D004777 ORTHO05D006240 5.4e-68 261.5 167 79.6
Potri.001G351400 Populus trichocarpa HOM05D004777 ORTHO05D006240 5.4e-68 261.5 228 65.4
THA.LOC104802404 Tarenaya hassleriana HOM05D004777 ORTHO05D006240 2.7e-67 259.2 175 76.0
Medtr6g007607 Medicago truncatula HOM05D004777 ORTHO05D006240 6.0e-67 258.1 206 68.0
Glyma.13G169500 Glycine max HOM05D004777 ORTHO05D006240 1.3e-66 256.9 222 67.1
Nitab4.5_0005176g0090 Nicotiana tabacum HOM05D004777 ORTHO05D006240 1.3e-66 256.9 218 63.8
Glyma.19G009700 Glycine max HOM05D004777 ORTHO05D006240 2.3e-66 256.1 222 66.2
Phvul.004G017000 Phaseolus vulgaris HOM05D004777 ORTHO05D006240 3.9e-66 255.4 221 65.6
CsaV3_3G042370 Cucumis sativus L. HOM05D004777 ORTHO05D006240 5.1e-66 255.0 224 67.9
Sabra16G0231000 Salix brachista HOM05D004777 ORTHO05D006240 6.6e-66 254.6 166 78.9
Potri.017G072800 Populus trichocarpa HOM05D004777 ORTHO05D006240 8.6e-66 254.2 222 64.4
ClCG10G014260 Citrullus lanatus HOM05D004777 ORTHO05D006240 1.1e-65 253.8 224 67.4
Lj2g0000040 Lotus japonicus HOM05D004777 ORTHO05D006240 1.1e-65 253.8 216 65.3
RcHm_v2.0_Chr2g0171361 Rosa chinensis HOM05D004777 ORTHO05D006240 1.1e-65 253.8 163 85.9
Nitab4.5_0003337g0100 Nicotiana tabacum HOM05D004777 ORTHO05D006240 1.9e-65 253.1 165 78.8
Lalb_Chr06g0176061 Lupinus albus HOM05D004777 ORTHO05D006240 2.5e-65 252.7 213 66.7
PGR142G2638 Punica granatum HOM05D004777 ORTHO05D006240 2.5e-65 252.7 230 63.0
MELO3C009952.2 Cucumis melo HOM05D004777 ORTHO05D006240 3.3e-65 252.3 224 67.0
Sabra17G0060200 Salix brachista HOM05D004777 ORTHO05D006240 3.3e-65 252.3 222 64.4
Sc16g0005400 Simmondsia chinensis HOM05D004777 ORTHO05D006240 4.3e-65 251.9 181 73.5
Ca_04203_v3 Cicer arietinum L. HOM05D004777 ORTHO05D006240 7.3e-65 251.1 165 80.0
TAR622G1080 Trochodendron aralioides HOM05D004777 ORTHO05D006240 7.3e-65 251.1 227 64.3
AUR62043215 Chenopodium quinoa HOM05D004777 ORTHO05D006240 2.8e-64 249.2 168 77.4
Gohir.A09G026100 Gossypium hirsutum HOM05D004777 ORTHO05D006240 2.8e-64 249.2 163 81.0
VMungo0464G0641 Vigna mungo HOM05D004777 ORTHO05D006240 4.7e-64 248.4 221 63.8
Rhsim08G0055400 Rhododendron simsii HOM05D004777 ORTHO05D006240 6.2e-64 248.1 160 81.9
DCAR_011208 Daucus carota HOM05D004777 ORTHO05D006240 1.1e-63 247.3 180 75.6
Lalb_Chr21g0319421 Lupinus albus HOM05D004777 ORTHO05D006240 1.1e-63 247.3 167 77.8
Lsat_1_v5_gn_0_26221 Lactuca sativa HOM05D004777 ORTHO05D006240 1.4e-63 246.9 176 71.0
Carub.0003s0061 Capsella rubella HOM05D004777 ORTHO05D006240 6.8e-63 244.6 207 63.3
AUR62035505 Chenopodium quinoa HOM05D004777 ORTHO05D006240 6.8e-63 244.6 168 76.8
Ciclev10015286m.g Citrus clementina HOM05D004777 ORTHO05D006240 6.8e-63 244.6 215 64.7
Peaxi162Scf00129g01038 Petunia axillaris HOM05D004777 ORTHO05D006240 6.8e-63 244.6 209 65.1
Sp3g00590 Schrenkiella parvula HOM05D004777 ORTHO05D006240 8.9e-63 244.2 201 63.7
Actinidia16931 Actinidia chinensis HOM05D004777 ORTHO05D006240 1.2e-62 243.8 218 67.0
HanXRQChr17g0547881 Helianthus annuus HOM05D004777 ORTHO05D006240 1.2e-62 243.8 220 62.3
Oeu043064.1 Olea europaea HOM05D004777 ORTHO05D006240 1.2e-62 243.8 227 62.6
TPR.G2322 Trifolium pratense HOM05D004777 ORTHO05D006240 1.5e-62 243.4 168 76.2
PSO017G2091 Papaver somniferum HOM05D004777 ORTHO05D006240 3.4e-62 242.3 218 62.4
Hund02275 Selenicereus undatus HOM05D004777 ORTHO05D006240 3.4e-62 242.3 206 66.5
Hma1.2p1_0802F.1_g220410 Hydrangea macrophylla HOM05D004777 ORTHO05D006240 5.8e-62 241.5 187 71.1
Sed0004879 Sechium edule HOM05D004777 ORTHO05D006240 5.8e-62 241.5 220 66.8
CARHR075480 Cardamine hirsuta HOM05D004777 ORTHO05D006240 7.6e-62 241.1 204 63.7
Thhalv10020775m.g Eutrema salsugineum HOM05D004777 ORTHO05D006240 7.6e-62 241.1 199 63.8
Lju41A35T60 Lonicera japonica HOM05D004777 ORTHO05D006240 7.6e-62 241.1 167 75.4
TAR374G0088 Trochodendron aralioides HOM05D004777 ORTHO05D006240 7.6e-62 241.1 227 63.0
PSO478G4796 Papaver somniferum HOM05D004777 ORTHO05D006240 1.3e-61 240.4 218 61.9
Atru.BG.27.p Acer truncatum HOM05D004777 ORTHO05D006240 1.7e-61 240.0 159 81.1
EL10Ac4g08570 Beta vulgaris HOM05D004777 ORTHO05D006240 2.2e-61 239.6 167 75.4
Psat1g057880 Pisum sativum HOM05D004777 ORTHO05D006240 2.2e-61 239.6 203 65.5
PGSC0003DMG401000527 Solanum tuberosum HOM05D004777 ORTHO05D006240 6.4e-61 238.0 179 69.8
AL3G10690 Arabidopsis lyrata HOM05D004777 ORTHO05D006240 1.1e-60 237.3 187 66.3
AT3G01480 Arabidopsis thaliana HOM05D004777 ORTHO05D006240 1.9e-60 236.5 196 65.3
Solyc02g086910.4 Solanum lycopersicum HOM05D004777 ORTHO05D006240 2.4e-60 236.1 183 67.8
Ah.04g163480 Amaranthus hybridus HOM05D004777 ORTHO05D006240 3.2e-60 235.7 169 74.6
Lj7A591G73 Lonicera japonica HOM05D004777 ORTHO05D006240 5.4e-60 235.0 165 73.9
Sopen02g031680 Solanum pennellii HOM05D004777 ORTHO05D006240 7.1e-60 234.6 183 67.2
Migut.H00126 Erythranthe guttata HOM05D004777 ORTHO05D006240 9.3e-60 234.2 229 59.8
MBI10_g11072_MAGBIO Magnolia biondii HOM05D004777 ORTHO05D006240 3.5e-59 232.3 166 74.1
Aa31LG5G10580 Aethionema arabicum HOM05D004777 ORTHO05D006240 1.7e-58 229.9 186 64.0
ECA246G3514 Erigeron canadensis HOM05D004777 ORTHO05D006240 1.7e-58 229.9 166 71.1
COL.COLO4_28942 Corchorus olitorius HOM05D004777 ORTHO05D006240 3.9e-58 228.8 140 83.6
Cc07_g02330 Coffea canephora HOM05D004777 ORTHO05D006240 6.6e-58 228.0 159 74.8
Zm00001eb042520 Zea mays HOM05D004777 ORTHO05D006240 1.1e-57 227.3 207 61.8
C09p75120 Brassica napus HOM05D004777 ORTHO05D006240 1.9e-57 226.5 163 71.8
MSTRG.3173 Avicennia marina HOM05D004777 ORTHO05D006240 3.3e-57 225.7 230 58.7
Aqoxy3G01003 Aquilegia oxysepala HOM05D004777 ORTHO05D006240 5.6e-57 224.9 233 55.8
Os08g0382400 Oryza sativa ssp. japonica HOM05D004777 ORTHO05D006240 5.6e-57 224.9 161 73.3
BolC5t35152H Brassica oleracea HOM05D004777 ORTHO05D006240 7.3e-57 224.6 163 70.6
SalBow1G4936 Salvia bowleyana HOM05D004777 ORTHO05D006240 7.3e-57 224.6 225 60.4
SGA_v2.0_scaffold135G34858 Striga asiatica HOM05D004777 ORTHO05D006240 7.3e-57 224.6 226 58.8
A05p44530 Brassica napus HOM05D004777 ORTHO05D006240 3.6e-56 222.2 203 60.6
BraA05t23204Z Brassica rapa HOM05D004777 ORTHO05D006240 1.1e-55 220.7 205 60.5
Nn4g22807 Nelumbo nucifera HOM05D004777 ORTHO05D006240 4.0e-55 218.8 180 65.0
ATR0730G054 Amborella trichopoda HOM05D004777 ORTHO05D006240 4.4e-54 215.3 183 63.9
HPP92_019954 Vanilla planifolia HOM05D004777 ORTHO05D006240 2.2e-53 213.0 204 56.9
CDE06G2275 Ceratophyllum demersum HOM05D004777 ORTHO05D006240 2.9e-53 212.6 172 63.4
CDE02G3984 Ceratophyllum demersum HOM05D004777 ORTHO05D006240 8.4e-53 211.1 220 53.6
CSS0037258 Camellia sinensis var. sinensis HOM05D004777 ORTHO05D000072 1.4e-52 210.3 201 63.2
unitig_21.g20495 Utricularia gibba HOM05D004777 ORTHO05D006240 3.2e-52 209.1 171 67.3
RcHm_v2.0_Chr2g0171281 Rosa chinensis HOM05D004777 ORTHO05D006240 1.5e-46 190.3 109 92.7
SEGI_33645 Sequoiadendron giganteum HOM05D004777 ORTHO05D006240 2.2e-45 186.4 176 59.1
MBI02_g21155_MAGBIO Magnolia biondii HOM05D004777 ORTHO05D006240 2.9e-37 159.5 104 81.7
AagrBONN_evm.TU.Sc2ySwM_368.1753 Anthoceros agrestis HOM05D004777 ORTHO05D006240 2.8e-32 142.9 158 48.7
Pp3c9_660 Physcomitrium patens HOM05D004777 ORTHO05D006240 1.4e-31 140.6 157 49.0
Pp3c15_550 Physcomitrium patens HOM05D004777 ORTHO05D006240 1.8e-31 140.2 158 48.1
CBR_g37206 Chara braunii HOM05D004777 ORTHO05D006240 3.1e-31 139.4 154 51.9
Mapoly0001s0360 Marchantia polymorpha HOM05D004777 ORTHO05D006240 6.9e-31 138.3 177 45.2
SEGI_25189 Sequoiadendron giganteum HOM05D004777 ORTHO05D006240 9.0e-31 137.9 124 57.3
MBI08_g43535_MAGBIO Magnolia biondii HOM05D004777 ORTHO05D006240 2.0e-30 136.7 86 82.6
Pp3c26_630 Physcomitrium patens HOM05D004777 ORTHO05D006240 1.5e-22 110.5 153 42.5
SMO146G0026 Selaginella moellendorffii HOM05D004777 ORTHO05D006240 2.6e-22 109.8 179 38.0
Cre03.g189800 Chlamydomonas reinhardtii HOM05D004777 ORTHO05D006240 1.0e-18 97.8 146 40.4
BcaB08g36813 Brassica carinata HOM05D004777 ORTHO05D006240 1.7e-16 90.5 68 61.8
A02p21620 Brassica napus HOM05D004777 ORTHO05D006240 5.5e-12 75.5 62 58.1
A02p21700 Brassica napus HOM05D004777 ORTHO05D006240 5.5e-12 75.5 62 58.1
PRCOL_00001222 Prasinoderma coloniale HOM05D004777 ORTHO05D006240 6.1e-11 72.0 153 32.7
C09p47230 Brassica napus HOM05D004777 ORTHO05D006240 1.0e-10 71.2 53 62.3
BolC2t09566H Brassica oleracea HOM05D004777 ORTHO05D022002 5.7e-09 65.5 53 60.4
MCO01G434 Micromonas commoda HOM05D004777 ORTHO05D006240 5.7e-09 65.5 113 33.6
SGA_v2.0_scaffold2726G54193 Striga asiatica HOM05D004777 ORTHO05D006240 2.2e-08 63.5 87 46.0
BolC6t35260H Brassica oleracea HOM05D004777 ORTHO05D022002 7.7e-06 55.1 53 56.6


User provided reference genes

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