Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0171361 Rosa chinensis HOM05D004777 ORTHO05D006240 6.1e-152 540.8 279 100.0
FAN05G4199 Fragaria x ananassa HOM05D004777 ORTHO05D006240 2.7e-91 339.3 320 64.4
FvH4_6g50590 Fragaria vesca HOM05D004777 ORTHO05D006240 1.3e-90 337.0 314 64.6
FAN14G1693 Fragaria x ananassa HOM05D004777 ORTHO05D006240 1.3e-90 337.0 314 64.6
FAN14G5049 Fragaria x ananassa HOM05D004777 ORTHO05D006240 1.3e-90 337.0 314 64.6
FAN09G3008 Fragaria x ananassa HOM05D004777 ORTHO05D006240 3.0e-90 335.9 314 64.3
Prupe.3G283500 Prunus persica HOM05D004777 ORTHO05D006240 1.6e-88 330.1 314 61.1
arahy.Tifrunner.gnm1.ann1.8Y3CFZ Arachis hypogaea HOM05D004777 ORTHO05D006240 2.6e-86 322.8 287 63.8
arahy.Tifrunner.gnm1.ann1.8ZV6UW Arachis hypogaea HOM05D004777 ORTHO05D006240 1.7e-85 320.1 287 63.1
Manes.15G183100 Manihot esculenta HOM05D004777 ORTHO05D006240 5.5e-84 315.1 314 58.6
CiPaw.03G037400 Carya illinoinensis HOM05D004777 ORTHO05D006240 1.6e-83 313.5 315 58.7
Thecc.04G008400 Theobroma cacao HOM05D004777 ORTHO05D006240 1.6e-83 313.5 314 58.0
MD17G1035100 Malus domestica HOM05D004777 ORTHO05D006240 7.9e-83 311.2 315 58.7
GSVIVG01032488001 Vitis vinifera HOM05D004777 ORTHO05D006240 3.9e-82 308.9 314 57.6
Duzib147G0776 Durio zibethinus HOM05D004777 ORTHO05D006240 1.5e-81 307.0 314 57.6
MD09G1035000 Malus domestica HOM05D004777 ORTHO05D006240 1.9e-81 306.6 315 57.5
CANSAT64G2847 Cannabis sativa HOM05D004777 ORTHO05D006240 3.3e-81 305.8 311 56.6
Potri.001G351400 Populus trichocarpa HOM05D004777 ORTHO05D006240 1.3e-80 303.9 310 57.1
vmacro18239 Vaccinium macrocarpon HOM05D004777 ORTHO05D006240 1.3e-80 303.9 312 58.3
Gohir.A07G219400 Gossypium hirsutum HOM05D004777 ORTHO05D006240 1.6e-80 303.5 314 56.4
QL02p076729 Quercus lobata HOM05D004777 ORTHO05D006240 1.6e-80 303.5 311 57.9
Duzib187G0683 Durio zibethinus HOM05D004777 ORTHO05D006240 8.2e-80 301.2 314 56.1
Eucgr.I01816 Eucalyptus grandis HOM05D004777 ORTHO05D006240 8.2e-80 301.2 315 56.5
Rhsim08G0055400 Rhododendron simsii HOM05D004777 ORTHO05D006240 1.1e-79 300.8 310 57.7
TWI56G1110 Tripterygium wilfordii HOM05D004777 ORTHO05D006240 1.8e-79 300.1 313 55.6
Cpa.g.sc186.15 Carica papaya HOM05D004777 ORTHO05D006240 2.4e-79 299.7 314 56.1
Sabra16G0231000 Salix brachista HOM05D004777 ORTHO05D006240 3.1e-79 299.3 310 56.1
CSS0014615 Camellia sinensis var. sinensis HOM05D004777 ORTHO05D006240 5.3e-79 298.5 311 57.9
Gohir.D07G226300 Gossypium hirsutum HOM05D004777 ORTHO05D006240 6.9e-79 298.1 314 55.7
Medtr6g007607 Medicago truncatula HOM05D004777 ORTHO05D006240 1.2e-78 297.4 314 55.4
Gorai.001G261200 Gossypium raimondii HOM05D004777 ORTHO05D006240 2.0e-78 296.6 314 55.4
THA.LOC104802404 Tarenaya hassleriana HOM05D004777 ORTHO05D006240 4.5e-78 295.4 314 53.5
Glyma.13G169500 Glycine max HOM05D004777 ORTHO05D006240 5.9e-78 295.0 313 56.5
Sabra17G0060200 Salix brachista HOM05D004777 ORTHO05D006240 7.7e-78 294.7 310 55.5
Phvul.004G017000 Phaseolus vulgaris HOM05D004777 ORTHO05D006240 1.3e-77 293.9 313 56.2
Glyma.19G009700 Glycine max HOM05D004777 ORTHO05D006240 1.7e-77 293.5 313 55.9
DCAR_011208 Daucus carota HOM05D004777 ORTHO05D006240 2.2e-77 293.1 315 56.5
Lj2g0000040 Lotus japonicus HOM05D004777 ORTHO05D006240 2.9e-77 292.7 314 54.8
Lalb_Chr06g0176061 Lupinus albus HOM05D004777 ORTHO05D006240 2.9e-77 292.7 314 55.4
Gohir.A09G026100 Gossypium hirsutum HOM05D004777 ORTHO05D006240 3.8e-77 292.4 317 55.8
VMungo0464G0641 Vigna mungo HOM05D004777 ORTHO05D006240 3.8e-77 292.4 313 55.9
CsaV3_3G042370 Cucumis sativus L. HOM05D004777 ORTHO05D006240 6.5e-77 291.6 315 55.9
Potri.017G072800 Populus trichocarpa HOM05D004777 ORTHO05D006240 6.5e-77 291.6 310 55.2
PGR142G2638 Punica granatum HOM05D004777 ORTHO05D006240 1.1e-76 290.8 315 55.9
EL10Ac4g08570 Beta vulgaris HOM05D004777 ORTHO05D006240 1.9e-76 290.0 315 55.9
Ca_04203_v3 Cicer arietinum L. HOM05D004777 ORTHO05D006240 1.9e-76 290.0 337 52.5
ClCG10G014260 Citrullus lanatus HOM05D004777 ORTHO05D006240 1.9e-76 290.0 315 55.9
Dinv33499 Davidia involucrata HOM05D004777 ORTHO05D006240 2.5e-76 289.7 316 55.1
MELO3C009952.2 Cucumis melo HOM05D004777 ORTHO05D006240 4.2e-76 288.9 315 55.6
Gorai.006G029700 Gossypium raimondii HOM05D004777 ORTHO05D006240 4.2e-76 288.9 314 55.1
TAR622G1080 Trochodendron aralioides HOM05D004777 ORTHO05D006240 4.2e-76 288.9 314 54.8
CSS0014422 Camellia sinensis var. sinensis HOM05D004777 ORTHO05D006240 5.5e-76 288.5 326 55.2
Nitab4.5_0005176g0090 Nicotiana tabacum HOM05D004777 ORTHO05D006240 5.5e-76 288.5 309 54.4
Nitab4.5_0003337g0100 Nicotiana tabacum HOM05D004777 ORTHO05D006240 7.2e-76 288.1 309 54.0
AUR62043215 Chenopodium quinoa HOM05D004777 ORTHO05D006240 9.4e-76 287.7 315 54.6
Ciclev10015286m.g Citrus clementina HOM05D004777 ORTHO05D006240 2.1e-75 286.6 308 55.8
TPR.G2322 Trifolium pratense HOM05D004777 ORTHO05D006240 2.1e-75 286.6 314 54.5
Hund02275 Selenicereus undatus HOM05D004777 ORTHO05D006240 3.6e-75 285.8 316 54.7
Sed0004879 Sechium edule HOM05D004777 ORTHO05D006240 4.6e-75 285.4 315 55.2
Atru.BG.27.p Acer truncatum HOM05D004777 ORTHO05D006240 1.0e-74 284.3 309 56.3
Gohir.D09G025500 Gossypium hirsutum HOM05D004777 ORTHO05D006240 1.0e-74 284.3 314 54.5
Hma1.2p1_0802F.1_g220410 Hydrangea macrophylla HOM05D004777 ORTHO05D006240 1.8e-74 283.5 311 54.0
Lju41A35T60 Lonicera japonica HOM05D004777 ORTHO05D006240 1.8e-74 283.5 314 54.1
Lalb_Chr21g0319421 Lupinus albus HOM05D004777 ORTHO05D006240 1.8e-74 283.5 317 54.3
AUR62035505 Chenopodium quinoa HOM05D004777 ORTHO05D006240 3.0e-74 282.7 315 54.3
Peaxi162Scf00129g01038 Petunia axillaris HOM05D004777 ORTHO05D006240 3.0e-74 282.7 316 53.5
Actinidia16931 Actinidia chinensis HOM05D004777 ORTHO05D006240 3.9e-74 282.3 309 56.3
Lj7A591G73 Lonicera japonica HOM05D004777 ORTHO05D006240 8.8e-74 281.2 310 54.2
FAN14G3936 Fragaria x ananassa HOM05D004777 ORTHO05D006240 1.5e-73 280.4 317 57.4
TAR374G0088 Trochodendron aralioides HOM05D004777 ORTHO05D006240 1.5e-73 280.4 314 54.1
Oeu043064.1 Olea europaea HOM05D004777 ORTHO05D006240 3.3e-73 279.3 314 54.8
Psat1g057880 Pisum sativum HOM05D004777 ORTHO05D006240 4.4e-73 278.9 314 52.9
PGSC0003DMG401000527 Solanum tuberosum HOM05D004777 ORTHO05D006240 1.3e-72 277.3 309 52.8
Carub.0003s0061 Capsella rubella HOM05D004777 ORTHO05D006240 1.7e-72 276.9 315 51.4
CARHR075480 Cardamine hirsuta HOM05D004777 ORTHO05D006240 2.2e-72 276.6 315 51.7
Cc07_g02330 Coffea canephora HOM05D004777 ORTHO05D006240 4.8e-72 275.4 309 53.7
Ah.04g163480 Amaranthus hybridus HOM05D004777 ORTHO05D006240 6.3e-72 275.0 317 53.6
AT3G01480 Arabidopsis thaliana HOM05D004777 ORTHO05D006240 1.1e-71 274.2 322 50.6
HanXRQChr17g0547881 Helianthus annuus HOM05D004777 ORTHO05D006240 1.1e-71 274.2 310 52.9
Solyc02g086910.4 Solanum lycopersicum HOM05D004777 ORTHO05D006240 1.1e-71 274.2 309 51.8
AL3G10690 Arabidopsis lyrata HOM05D004777 ORTHO05D006240 2.4e-71 273.1 315 51.1
Sopen02g031680 Solanum pennellii HOM05D004777 ORTHO05D006240 2.4e-71 273.1 309 51.5
ECA246G3514 Erigeron canadensis HOM05D004777 ORTHO05D006240 3.1e-71 272.7 308 52.9
MBI10_g11072_MAGBIO Magnolia biondii HOM05D004777 ORTHO05D006240 6.9e-71 271.6 320 52.2
PSO017G2091 Papaver somniferum HOM05D004777 ORTHO05D006240 9.1e-71 271.2 312 52.9
Sp3g00590 Schrenkiella parvula HOM05D004777 ORTHO05D006240 1.5e-70 270.4 315 50.2
PSO478G4796 Papaver somniferum HOM05D004777 ORTHO05D006240 3.4e-70 269.2 312 52.6
Migut.H00126 Erythranthe guttata HOM05D004777 ORTHO05D006240 5.9e-70 268.5 313 53.0
Aa31LG5G10580 Aethionema arabicum HOM05D004777 ORTHO05D006240 7.7e-70 268.1 317 49.5
MSTRG.3173 Avicennia marina HOM05D004777 ORTHO05D006240 7.7e-70 268.1 313 52.4
COL.COLO4_28942 Corchorus olitorius HOM05D004777 ORTHO05D006240 1.3e-69 267.3 319 51.7
C09p75120 Brassica napus HOM05D004777 ORTHO05D006240 1.1e-68 264.2 313 50.2
BolC5t35152H Brassica oleracea HOM05D004777 ORTHO05D006240 4.2e-68 262.3 313 49.5
Os08g0382400 Oryza sativa ssp. japonica HOM05D004777 ORTHO05D006240 9.4e-68 261.2 312 51.3
Zm00001eb042520 Zea mays HOM05D004777 ORTHO05D006240 9.4e-68 261.2 314 50.3
Haze_14664 Corylus avellana HOM05D004777 ORTHO05D006240 1.2e-67 260.8 416 43.0
ATR0730G054 Amborella trichopoda HOM05D004777 ORTHO05D006240 2.1e-67 260.0 308 50.6
Aqoxy3G01003 Aquilegia oxysepala HOM05D004777 ORTHO05D006240 2.1e-67 260.0 318 49.7
BraA05t23204Z Brassica rapa HOM05D004777 ORTHO05D006240 2.1e-67 260.0 313 49.8
SGA_v2.0_scaffold135G34858 Striga asiatica HOM05D004777 ORTHO05D006240 6.1e-67 258.5 311 52.1
A05p44530 Brassica napus HOM05D004777 ORTHO05D006240 1.4e-66 257.3 309 49.8
Nn4g22807 Nelumbo nucifera HOM05D004777 ORTHO05D006240 5.2e-66 255.4 314 49.7
Sc16g0005400 Simmondsia chinensis HOM05D004777 ORTHO05D006240 1.5e-65 253.8 294 52.7
RcHm_v2.0_Chr2g0171371 Rosa chinensis HOM05D004777 ORTHO05D006240 2.0e-65 253.4 163 85.9
CDE02G3984 Ceratophyllum demersum HOM05D004777 ORTHO05D006240 4.4e-65 252.3 308 47.7
unitig_21.g20495 Utricularia gibba HOM05D004777 ORTHO05D006240 1.3e-64 250.8 312 50.3
Thhalv10020775m.g Eutrema salsugineum HOM05D004777 ORTHO05D006240 5.2e-58 228.8 294 47.3
Lsat_1_v5_gn_0_26221 Lactuca sativa HOM05D004777 ORTHO05D006240 2.4e-55 219.9 280 48.6
SEGI_33645 Sequoiadendron giganteum HOM05D004777 ORTHO05D006240 8.5e-53 211.5 312 43.3
AagrBONN_evm.TU.Sc2ySwM_368.1753 Anthoceros agrestis HOM05D004777 ORTHO05D006240 1.2e-43 181.0 309 38.5
Pp3c9_660 Physcomitrium patens HOM05D004777 ORTHO05D006240 5.2e-42 175.6 308 37.7
Pp3c15_550 Physcomitrium patens HOM05D004777 ORTHO05D006240 2.0e-41 173.7 309 37.2
Mapoly0001s0360 Marchantia polymorpha HOM05D004777 ORTHO05D006240 1.3e-40 171.0 314 37.6
SMO146G0026 Selaginella moellendorffii HOM05D004777 ORTHO05D006240 1.7e-40 170.6 296 38.9
SalBow1G4936 Salvia bowleyana HOM05D004777 ORTHO05D006240 6.3e-40 168.7 191 55.0
CDE06G2275 Ceratophyllum demersum HOM05D004777 ORTHO05D006240 3.1e-39 166.4 158 55.7
HPP92_019954 Vanilla planifolia HOM05D004777 ORTHO05D006240 3.1e-39 166.4 173 54.3
CBR_g37206 Chara braunii HOM05D004777 ORTHO05D006240 3.5e-38 162.9 309 37.2
CSS0037258 Camellia sinensis var. sinensis HOM05D004777 ORTHO05D000072 1.3e-37 161.0 137 68.6
RcHm_v2.0_Chr2g0171281 Rosa chinensis HOM05D004777 ORTHO05D006240 3.3e-36 156.4 109 82.6
Pp3c26_630 Physcomitrium patens HOM05D004777 ORTHO05D006240 5.7e-33 145.6 270 36.3
RcHm_v2.0_Chr2g0171381 Rosa chinensis HOM05D004777 ORTHO05D006240 8.3e-32 141.7 72 95.8
CAN.G206.34 Capsicum annuum HOM05D004777 ORTHO05D006240 7.8e-30 135.2 72 90.3
HPP92_019953 Vanilla planifolia HOM05D004777 ORTHO05D006240 1.2e-27 127.9 72 84.7
BcaC09g47657 Brassica carinata HOM05D004777 ORTHO05D006240 4.7e-27 125.9 72 81.9
MBI02_g21155_MAGBIO Magnolia biondii HOM05D004777 ORTHO05D006240 4.4e-25 119.4 104 67.3
Cre03.g189800 Chlamydomonas reinhardtii HOM05D004777 ORTHO05D006240 3.7e-24 116.3 298 29.5
C09p47230 Brassica napus HOM05D004777 ORTHO05D006240 1.7e-21 107.5 206 34.0
MBI08_g43535_MAGBIO Magnolia biondii HOM05D004777 ORTHO05D006240 4.3e-20 102.8 81 69.1
SEGI_25189 Sequoiadendron giganteum HOM05D004777 ORTHO05D006240 8.9e-18 95.1 124 44.4
HPP92_019963 Vanilla planifolia HOM05D004777 ORTHO05D006240 6.4e-16 89.0 49 85.7
BcaB08g36813 Brassica carinata HOM05D004777 ORTHO05D006240 2.4e-15 87.0 67 61.2
BolC2t09566H Brassica oleracea HOM05D004777 ORTHO05D022002 3.0e-13 80.1 109 44.0
BolC9t57579H Brassica oleracea HOM05D004777 ORTHO05D006240 7.3e-12 75.5 81 49.4
A02p21620 Brassica napus HOM05D004777 ORTHO05D006240 9.5e-12 75.1 62 58.1
A02p21700 Brassica napus HOM05D004777 ORTHO05D006240 9.5e-12 75.1 62 58.1
MCO01G434 Micromonas commoda HOM05D004777 ORTHO05D006240 1.6e-11 74.3 75 52.0
PRCOL_00001222 Prasinoderma coloniale HOM05D004777 ORTHO05D006240 2.8e-11 73.6 78 51.3
BolC6t35260H Brassica oleracea HOM05D004777 ORTHO05D022002 2.4e-10 70.5 103 43.7


User provided reference genes

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