Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0171281 Rosa chinensis HOM05D004777 ORTHO05D006240 8.5e-55 216.9 117 100.0
RcHm_v2.0_Chr2g0171371 Rosa chinensis HOM05D004777 ORTHO05D006240 1.9e-46 189.1 109 92.7
arahy.Tifrunner.gnm1.ann1.8Y3CFZ Arachis hypogaea HOM05D004777 ORTHO05D006240 2.0e-43 179.1 109 87.2
Prupe.3G283500 Prunus persica HOM05D004777 ORTHO05D006240 4.4e-43 177.9 109 86.2
arahy.Tifrunner.gnm1.ann1.8ZV6UW Arachis hypogaea HOM05D004777 ORTHO05D006240 1.3e-42 176.4 109 85.3
Ca_04203_v3 Cicer arietinum L. HOM05D004777 ORTHO05D006240 2.8e-42 175.3 109 86.2
FvH4_6g50590 Fragaria vesca HOM05D004777 ORTHO05D006240 4.8e-42 174.5 109 88.1
FAN05G4199 Fragaria x ananassa HOM05D004777 ORTHO05D006240 4.8e-42 174.5 109 88.1
FAN09G3008 Fragaria x ananassa HOM05D004777 ORTHO05D006240 4.8e-42 174.5 109 88.1
FAN14G1693 Fragaria x ananassa HOM05D004777 ORTHO05D006240 4.8e-42 174.5 109 88.1
FAN14G5049 Fragaria x ananassa HOM05D004777 ORTHO05D006240 4.8e-42 174.5 109 88.1
Dinv33499 Davidia involucrata HOM05D004777 ORTHO05D006240 8.3e-42 173.7 109 82.6
Medtr6g007607 Medicago truncatula HOM05D004777 ORTHO05D006240 8.3e-42 173.7 109 82.6
MD17G1035100 Malus domestica HOM05D004777 ORTHO05D006240 3.1e-41 171.8 110 83.6
TPR.G2322 Trifolium pratense HOM05D004777 ORTHO05D006240 7.0e-41 170.6 109 83.5
CANSAT64G2847 Cannabis sativa HOM05D004777 ORTHO05D006240 9.1e-41 170.2 109 78.9
Manes.15G183100 Manihot esculenta HOM05D004777 ORTHO05D006240 1.6e-40 169.5 109 80.7
Glyma.13G169500 Glycine max HOM05D004777 ORTHO05D006240 2.7e-40 168.7 109 84.4
GSVIVG01032488001 Vitis vinifera HOM05D004777 ORTHO05D006240 3.5e-40 168.3 109 81.7
Lsat_1_v5_gn_0_26221 Lactuca sativa HOM05D004777 ORTHO05D006240 4.5e-40 167.9 109 78.9
Glyma.19G009700 Glycine max HOM05D004777 ORTHO05D006240 5.9e-40 167.5 109 83.5
Nitab4.5_0003337g0100 Nicotiana tabacum HOM05D004777 ORTHO05D006240 5.9e-40 167.5 109 79.8
MD09G1035000 Malus domestica HOM05D004777 ORTHO05D006240 7.7e-40 167.2 110 80.9
Potri.001G351400 Populus trichocarpa HOM05D004777 ORTHO05D006240 7.7e-40 167.2 109 78.9
QL02p076729 Quercus lobata HOM05D004777 ORTHO05D006240 1.0e-39 166.8 107 82.2
CiPaw.03G037400 Carya illinoinensis HOM05D004777 ORTHO05D006240 1.3e-39 166.4 110 80.9
Lalb_Chr21g0319421 Lupinus albus HOM05D004777 ORTHO05D006240 1.3e-39 166.4 107 83.2
Phvul.004G017000 Phaseolus vulgaris HOM05D004777 ORTHO05D006240 1.3e-39 166.4 109 82.6
Rhsim08G0055400 Rhododendron simsii HOM05D004777 ORTHO05D006240 1.3e-39 166.4 109 81.7
VMungo0464G0641 Vigna mungo HOM05D004777 ORTHO05D006240 1.7e-39 166.0 109 81.7
CSS0014422 Camellia sinensis var. sinensis HOM05D004777 ORTHO05D006240 2.3e-39 165.6 110 81.8
CSS0014615 Camellia sinensis var. sinensis HOM05D004777 ORTHO05D006240 2.3e-39 165.6 110 81.8
Psat1g057880 Pisum sativum HOM05D004777 ORTHO05D006240 2.3e-39 165.6 108 82.4
Cpa.g.sc186.15 Carica papaya HOM05D004777 ORTHO05D006240 3.8e-39 164.9 109 78.0
Gohir.A07G219400 Gossypium hirsutum HOM05D004777 ORTHO05D006240 3.8e-39 164.9 109 78.0
Gohir.D07G226300 Gossypium hirsutum HOM05D004777 ORTHO05D006240 3.8e-39 164.9 109 78.0
Sabra16G0231000 Salix brachista HOM05D004777 ORTHO05D006240 5.0e-39 164.5 109 78.0
Sabra17G0060200 Salix brachista HOM05D004777 ORTHO05D006240 5.0e-39 164.5 109 78.0
Haze_14664 Corylus avellana HOM05D004777 ORTHO05D006240 6.6e-39 164.1 110 80.0
Lj2g0000040 Lotus japonicus HOM05D004777 ORTHO05D006240 6.6e-39 164.1 109 78.9
Lalb_Chr06g0176061 Lupinus albus HOM05D004777 ORTHO05D006240 6.6e-39 164.1 109 80.7
Nitab4.5_0005176g0090 Nicotiana tabacum HOM05D004777 ORTHO05D006240 6.6e-39 164.1 109 78.0
Gorai.001G261200 Gossypium raimondii HOM05D004777 ORTHO05D006240 1.1e-38 163.3 109 77.1
Peaxi162Scf00129g01038 Petunia axillaris HOM05D004777 ORTHO05D006240 1.1e-38 163.3 109 78.9
Carub.0003s0061 Capsella rubella HOM05D004777 ORTHO05D006240 1.5e-38 162.9 110 77.3
Hma1.2p1_0802F.1_g220410 Hydrangea macrophylla HOM05D004777 ORTHO05D006240 1.5e-38 162.9 109 79.8
Potri.017G072800 Populus trichocarpa HOM05D004777 ORTHO05D006240 1.9e-38 162.5 107 77.6
Thecc.04G008400 Theobroma cacao HOM05D004777 ORTHO05D006240 1.9e-38 162.5 109 77.1
TWI56G1110 Tripterygium wilfordii HOM05D004777 ORTHO05D006240 1.9e-38 162.5 109 78.0
Duzib147G0776 Durio zibethinus HOM05D004777 ORTHO05D006240 2.5e-38 162.2 109 78.0
Duzib187G0683 Durio zibethinus HOM05D004777 ORTHO05D006240 2.5e-38 162.2 107 78.5
THA.LOC104802404 Tarenaya hassleriana HOM05D004777 ORTHO05D006240 2.5e-38 162.2 109 76.1
vmacro18239 Vaccinium macrocarpon HOM05D004777 ORTHO05D006240 2.5e-38 162.2 111 82.0
DCAR_011208 Daucus carota HOM05D004777 ORTHO05D006240 3.3e-38 161.8 110 80.0
Eucgr.I01816 Eucalyptus grandis HOM05D004777 ORTHO05D006240 3.3e-38 161.8 110 77.3
CARHR075480 Cardamine hirsuta HOM05D004777 ORTHO05D006240 5.5e-38 161.0 110 77.3
Lj7A591G73 Lonicera japonica HOM05D004777 ORTHO05D006240 5.5e-38 161.0 110 76.4
Sc16g0005400 Simmondsia chinensis HOM05D004777 ORTHO05D006240 9.5e-38 160.2 109 77.1
Atru.BG.27.p Acer truncatum HOM05D004777 ORTHO05D006240 1.2e-37 159.8 110 80.0
AT3G01480 Arabidopsis thaliana HOM05D004777 ORTHO05D006240 1.2e-37 159.8 110 76.4
Thhalv10020775m.g Eutrema salsugineum HOM05D004777 ORTHO05D006240 2.1e-37 159.1 110 75.5
AUR62035505 Chenopodium quinoa HOM05D004777 ORTHO05D006240 4.7e-37 157.9 110 78.2
CSS0037258 Camellia sinensis var. sinensis HOM05D004777 ORTHO05D000072 6.1e-37 157.5 110 79.1
MBI10_g11072_MAGBIO Magnolia biondii HOM05D004777 ORTHO05D006240 8.0e-37 157.1 109 77.1
ECA246G3514 Erigeron canadensis HOM05D004777 ORTHO05D006240 1.0e-36 156.8 108 75.9
Gohir.A09G026100 Gossypium hirsutum HOM05D004777 ORTHO05D006240 1.0e-36 156.8 109 78.0
Actinidia16931 Actinidia chinensis HOM05D004777 ORTHO05D006240 1.4e-36 156.4 110 79.1
Cc07_g02330 Coffea canephora HOM05D004777 ORTHO05D006240 1.4e-36 156.4 110 77.3
Oeu043064.1 Olea europaea HOM05D004777 ORTHO05D006240 1.4e-36 156.4 111 78.4
PGR142G2638 Punica granatum HOM05D004777 ORTHO05D006240 1.4e-36 156.4 110 77.3
EL10Ac4g08570 Beta vulgaris HOM05D004777 ORTHO05D006240 1.8e-36 156.0 110 77.3
Gohir.D09G025500 Gossypium hirsutum HOM05D004777 ORTHO05D006240 1.8e-36 156.0 109 77.1
Gorai.006G029700 Gossypium raimondii HOM05D004777 ORTHO05D006240 1.8e-36 156.0 109 77.1
HanXRQChr17g0547881 Helianthus annuus HOM05D004777 ORTHO05D006240 1.8e-36 156.0 111 74.8
AL3G10690 Arabidopsis lyrata HOM05D004777 ORTHO05D006240 2.3e-36 155.6 110 74.5
AUR62043215 Chenopodium quinoa HOM05D004777 ORTHO05D006240 2.3e-36 155.6 110 76.4
RcHm_v2.0_Chr2g0171361 Rosa chinensis HOM05D004777 ORTHO05D006240 2.3e-36 155.6 109 82.6
Aa31LG5G10580 Aethionema arabicum HOM05D004777 ORTHO05D006240 3.0e-36 155.2 107 74.8
PGSC0003DMG401000527 Solanum tuberosum HOM05D004777 ORTHO05D006240 3.0e-36 155.2 109 74.3
Ciclev10015286m.g Citrus clementina HOM05D004777 ORTHO05D006240 4.0e-36 154.8 109 76.1
Solyc02g086910.4 Solanum lycopersicum HOM05D004777 ORTHO05D006240 4.0e-36 154.8 109 73.4
Sp3g00590 Schrenkiella parvula HOM05D004777 ORTHO05D006240 6.8e-36 154.1 110 72.7
ClCG10G014260 Citrullus lanatus HOM05D004777 ORTHO05D006240 8.9e-36 153.7 108 78.7
Sed0004879 Sechium edule HOM05D004777 ORTHO05D006240 8.9e-36 153.7 108 78.7
Sopen02g031680 Solanum pennellii HOM05D004777 ORTHO05D006240 8.9e-36 153.7 109 72.5
Zm00001eb042520 Zea mays HOM05D004777 ORTHO05D006240 1.2e-35 153.3 109 73.4
Migut.H00126 Erythranthe guttata HOM05D004777 ORTHO05D006240 2.0e-35 152.5 109 78.0
Lju41A35T60 Lonicera japonica HOM05D004777 ORTHO05D006240 2.0e-35 152.5 109 74.3
CsaV3_3G042370 Cucumis sativus L. HOM05D004777 ORTHO05D006240 3.4e-35 151.8 108 77.8
C09p75120 Brassica napus HOM05D004777 ORTHO05D006240 5.7e-35 151.0 109 74.3
Hund02275 Selenicereus undatus HOM05D004777 ORTHO05D006240 5.7e-35 151.0 111 74.8
COL.COLO4_28942 Corchorus olitorius HOM05D004777 ORTHO05D006240 7.5e-35 150.6 95 81.1
MELO3C009952.2 Cucumis melo HOM05D004777 ORTHO05D006240 7.5e-35 150.6 108 76.9
Os08g0382400 Oryza sativa ssp. japonica HOM05D004777 ORTHO05D006240 1.3e-34 149.8 107 72.9
SalBow1G4936 Salvia bowleyana HOM05D004777 ORTHO05D006240 1.7e-34 149.4 109 77.1
BolC5t35152H Brassica oleracea HOM05D004777 ORTHO05D006240 2.2e-34 149.1 109 72.5
TAR622G1080 Trochodendron aralioides HOM05D004777 ORTHO05D006240 2.8e-34 148.7 109 72.5
MSTRG.3173 Avicennia marina HOM05D004777 ORTHO05D006240 8.3e-34 147.1 111 73.0
PSO017G2091 Papaver somniferum HOM05D004777 ORTHO05D006240 1.1e-33 146.7 109 72.5
SGA_v2.0_scaffold135G34858 Striga asiatica HOM05D004777 ORTHO05D006240 1.4e-33 146.4 109 75.2
TAR374G0088 Trochodendron aralioides HOM05D004777 ORTHO05D006240 1.4e-33 146.4 109 73.4
unitig_21.g20495 Utricularia gibba HOM05D004777 ORTHO05D006240 2.4e-33 145.6 109 74.3
BraA05t23204Z Brassica rapa HOM05D004777 ORTHO05D006240 3.1e-33 145.2 109 72.5
PSO478G4796 Papaver somniferum HOM05D004777 ORTHO05D006240 5.4e-33 144.4 109 71.6
A05p44530 Brassica napus HOM05D004777 ORTHO05D006240 7.0e-33 144.1 109 71.6
Nn4g22807 Nelumbo nucifera HOM05D004777 ORTHO05D006240 9.2e-33 143.7 106 69.8
Ah.04g163480 Amaranthus hybridus HOM05D004777 ORTHO05D006240 2.0e-32 142.5 112 72.3
CDE02G3984 Ceratophyllum demersum HOM05D004777 ORTHO05D006240 2.0e-32 142.5 107 68.2
Aqoxy3G01003 Aquilegia oxysepala HOM05D004777 ORTHO05D006240 2.7e-32 142.1 113 68.1
CDE06G2275 Ceratophyllum demersum HOM05D004777 ORTHO05D006240 3.5e-32 141.7 107 68.2
HPP92_019954 Vanilla planifolia HOM05D004777 ORTHO05D006240 1.7e-31 139.4 109 67.0
ATR0730G054 Amborella trichopoda HOM05D004777 ORTHO05D006240 2.3e-31 139.0 109 69.7
FAN14G3936 Fragaria x ananassa HOM05D004777 ORTHO05D006240 1.1e-30 136.7 109 73.4
MBI02_g21155_MAGBIO Magnolia biondii HOM05D004777 ORTHO05D006240 6.4e-26 120.9 74 86.5
SEGI_33645 Sequoiadendron giganteum HOM05D004777 ORTHO05D006240 2.4e-25 119.0 109 60.6
MBI08_g43535_MAGBIO Magnolia biondii HOM05D004777 ORTHO05D006240 8.6e-23 110.5 67 85.1
AagrBONN_evm.TU.Sc2ySwM_368.1753 Anthoceros agrestis HOM05D004777 ORTHO05D006240 1.2e-19 100.1 107 48.6
Pp3c15_550 Physcomitrium patens HOM05D004777 ORTHO05D006240 1.5e-19 99.8 109 50.5
Mapoly0001s0360 Marchantia polymorpha HOM05D004777 ORTHO05D006240 1.7e-18 96.3 117 49.6
Pp3c9_660 Physcomitrium patens HOM05D004777 ORTHO05D006240 3.7e-18 95.1 109 48.6
CBR_g37206 Chara braunii HOM05D004777 ORTHO05D006240 7.0e-17 90.9 115 47.8
SEGI_25189 Sequoiadendron giganteum HOM05D004777 ORTHO05D006240 1.6e-16 89.7 89 49.4
Pp3c26_630 Physcomitrium patens HOM05D004777 ORTHO05D006240 4.3e-14 81.6 75 57.3
SMO146G0026 Selaginella moellendorffii HOM05D004777 ORTHO05D006240 4.7e-13 78.2 102 46.1
Cre03.g189800 Chlamydomonas reinhardtii HOM05D004777 ORTHO05D006240 3.2e-09 65.5 78 43.6
PRCOL_00001222 Prasinoderma coloniale HOM05D004777 ORTHO05D006240 1.5e-06 56.6 116 37.1
SGA_v2.0_scaffold2726G54193 Striga asiatica HOM05D004777 ORTHO05D006240 7.3e-06 54.3 77 44.2


User provided reference genes

Program Settings