Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1102.0 549 100.0
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 6.2e-156 555.1 582 56.0
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 9.2e-152 541.2 572 55.2
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 3.3e-149 532.7 581 54.2
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 3.3e-149 532.7 581 54.2
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 4.3e-149 532.3 581 54.6
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 4.3e-149 532.3 580 54.1
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 5.6e-149 531.9 579 53.7
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 9.6e-149 531.2 581 54.0
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 1.3e-148 530.8 581 54.2
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 1.6e-148 530.4 579 53.5
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 2.1e-148 530.0 570 53.7
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 4.8e-148 528.9 579 53.7
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 8.1e-148 528.1 572 54.2
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 1.1e-147 527.7 581 53.5
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 1.1e-147 527.7 572 53.3
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 2.4e-147 526.6 571 54.6
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 4.0e-147 525.8 581 54.4
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 5.3e-147 525.4 577 53.4
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 9.0e-147 524.6 580 53.3
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 2.6e-146 523.1 577 54.1
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 2.6e-146 523.1 578 53.6
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 3.4e-146 522.7 579 53.4
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 3.4e-146 522.7 570 53.3
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 5.8e-146 521.9 557 54.0
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 7.6e-146 521.5 580 52.6
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 7.6e-146 521.5 569 53.4
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 9.9e-146 521.2 567 54.0
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 9.9e-146 521.2 569 53.4
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 1.7e-145 520.4 567 53.8
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 1.7e-145 520.4 580 53.1
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 2.2e-145 520.0 570 54.2
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 3.8e-145 519.2 568 54.4
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 4.9e-145 518.8 569 53.4
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 1.1e-144 517.7 569 54.0
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 1.1e-144 517.7 570 54.7
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 3.2e-144 516.2 580 53.4
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 1.2e-143 514.2 569 52.7
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 2.1e-143 513.5 579 52.0
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 3.5e-143 512.7 568 53.5
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 3.5e-143 512.7 568 52.8
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 6.0e-143 511.9 742 42.9
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 6.0e-143 511.9 568 54.0
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 7.8e-143 511.5 567 52.6
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 7.8e-143 511.5 574 52.4
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 7.8e-143 511.5 582 51.9
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 1.0e-142 511.1 568 52.8
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 2.3e-142 510.0 583 52.0
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 5.1e-142 508.8 568 52.6
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 5.1e-142 508.8 599 50.8
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 8.7e-142 508.1 581 50.8
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 7.3e-141 505.0 569 52.7
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 9.6e-141 504.6 582 51.9
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 1.3e-140 504.2 581 50.6
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 4.8e-140 502.3 544 53.9
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.4e-139 500.7 544 53.5
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 1.4e-139 500.7 581 50.9
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 2.4e-139 500.0 580 50.5
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 6.9e-139 498.4 768 41.3
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 4.5e-138 495.7 543 53.0
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 4.5e-138 495.7 570 51.1
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 5.8e-138 495.4 548 53.1
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 9.9e-138 494.6 548 52.9
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 1.3e-137 494.2 569 52.0
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 2.2e-137 493.4 566 50.9
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 2.2e-137 493.4 581 50.1
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 4.9e-137 492.3 568 50.9
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 4.9e-137 492.3 543 52.7
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 4.9e-137 492.3 566 50.4
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 6.4e-137 491.9 570 51.1
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 8.4e-137 491.5 581 50.4
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 8.4e-137 491.5 574 50.3
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 1.1e-136 491.1 543 52.7
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 1.4e-136 490.7 543 52.7
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 1.4e-136 490.7 543 52.7
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 1.4e-136 490.7 570 50.9
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 2.4e-136 490.0 567 51.7
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 2.4e-136 490.0 543 52.7
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 4.2e-136 489.2 568 51.2
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 5.4e-136 488.8 568 51.2
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 5.4e-136 488.8 544 52.8
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 7.1e-136 488.4 543 52.5
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 7.1e-136 488.4 544 52.6
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 1.2e-135 487.6 569 50.3
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 1.6e-135 487.3 571 50.4
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 2.7e-135 486.5 553 52.3
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 2.7e-135 486.5 565 50.1
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 2.7e-135 486.5 576 50.5
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 3.5e-135 486.1 540 53.9
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 2.3e-134 483.4 540 53.3
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 3.0e-134 483.0 544 52.0
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 8.7e-134 481.5 570 49.8
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 8.7e-134 481.5 558 51.4
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 1.5e-133 480.7 569 50.1
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 1.9e-133 480.3 540 52.8
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 1.9e-133 480.3 540 52.8
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 2.5e-133 479.9 540 53.1
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 2.5e-133 479.9 572 50.3
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 7.4e-133 478.4 575 50.1
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 9.6e-133 478.0 558 50.5
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 8.1e-132 474.9 588 48.0
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 6.9e-131 471.9 562 50.7
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 3.4e-130 469.5 525 52.2
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 3.4e-130 469.5 555 50.8
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 1.7e-129 467.2 556 49.1
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 2.4e-123 446.8 558 48.2
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 1.0e-118 431.4 584 46.9
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 1.3e-118 431.0 563 45.8
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 6.3e-116 422.2 560 45.2
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 1.7e-113 414.1 560 45.0
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 3.6e-111 406.4 560 44.5
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 3.9e-110 402.9 429 54.8
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 4.1e-107 392.9 582 42.6
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 1.2e-106 391.3 579 42.7
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 2.6e-101 373.6 593 41.3
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.3e-100 371.3 367 57.2
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 3.5e-90 336.7 540 43.0
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 2.1e-87 327.4 354 54.8
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 1.6e-82 311.2 558 40.0
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 2.7e-82 310.5 354 47.7
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.0e-69 267.7 382 44.2
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 9.8e-69 265.4 568 36.8
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.9e-64 251.1 277 47.7
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 4.7e-63 246.5 366 44.8
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.4e-51 207.6 283 47.3
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 6.4e-44 183.0 282 41.8
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 4.3e-40 170.2 183 54.1
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 4.7e-39 166.8 354 34.2
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.1e-32 145.6 197 44.2
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 8.1e-23 112.8 156 44.9
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 2.6e-21 107.8 278 32.0
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 2.5e-16 91.3 83 60.2
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 3.1e-14 84.3 60 63.3
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 4.5e-13 80.5 54 63.0
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 9.3e-11 72.8 54 55.6
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 3.1e-06 57.8 71 49.3


User provided reference genes

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