Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1711.8 858 100.0
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1653.6 858 95.7
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1643.6 858 95.3
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1639.4 858 95.1
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1622.4 917 89.3
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1617.4 917 88.3
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1560.8 861 89.4
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1549.3 853 88.5
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1476.5 858 83.4
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1437.9 860 81.2
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1437.9 854 81.5
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1436.4 860 80.9
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1434.9 854 81.4
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1433.7 860 80.8
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1432.5 855 81.2
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1428.7 854 80.8
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1427.9 858 81.1
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1427.2 858 80.8
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1426.8 861 80.5
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1426.0 861 80.4
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1425.2 855 80.7
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1424.1 860 80.3
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1420.2 854 80.4
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1419.1 854 80.7
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1414.1 863 81.1
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1404.4 861 80.4
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1404.0 862 79.6
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1399.4 861 79.2
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1399.4 861 79.0
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1398.3 855 79.3
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1393.3 862 79.1
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1391.3 866 79.3
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1389.8 854 80.3
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1387.1 858 78.8
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1385.5 879 77.4
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1372.5 865 79.2
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1369.4 856 78.0
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1368.2 862 78.2
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1365.9 856 77.9
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1364.0 864 77.2
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1359.7 861 77.8
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1358.6 857 77.6
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1357.8 920 73.4
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1357.4 862 77.6
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1357.0 862 76.2
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1356.3 862 77.1
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1350.5 863 76.4
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1347.8 856 77.3
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1336.6 936 72.1
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1334.7 906 72.7
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1331.6 871 75.2
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1330.5 867 76.1
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1330.5 861 75.3
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1328.2 861 75.4
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1327.4 861 75.8
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1325.5 861 75.0
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1324.7 884 73.9
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1323.9 867 76.2
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1323.9 863 75.4
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1318.9 854 75.8
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1316.6 920 72.4
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1312.4 861 74.3
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1311.2 858 74.8
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1310.0 854 74.6
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1309.3 861 74.4
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1308.9 859 74.6
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1304.7 876 74.5
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1303.5 871 73.2
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1295.4 963 67.6
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1292.3 872 73.2
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1291.2 872 73.1
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1291.2 872 73.1
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1290.4 864 73.6
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1289.6 884 73.2
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1289.2 872 73.1
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1289.2 872 73.1
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1289.2 872 73.1
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1286.9 872 72.9
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1284.6 872 72.8
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1284.2 854 73.4
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1282.7 872 72.7
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1276.9 872 72.4
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1271.1 871 72.0
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1256.5 779 78.9
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1245.7 853 70.0
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1239.9 804 74.3
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1236.9 869 69.3
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1227.6 854 71.1
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1216.1 743 79.9
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1119.8 861 66.2
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1118.2 853 67.6
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 0.0e+00 1084.7 855 60.4
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 8.8e-311 1070.1 855 60.8
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 8.4e-309 1063.5 868 65.3
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 2.0e-302 1042.3 893 60.8
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 3.3e-297 1025.0 1158 51.6
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 1.5e-294 1016.1 854 57.0
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.0e-278 962.6 871 60.7
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 6.7e-274 947.6 703 70.0
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 4.3e-273 944.9 622 73.3
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 2.2e-272 942.6 811 61.0
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 8.8e-250 867.5 745 62.7
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 8.5e-245 850.9 603 69.3
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 3.0e-221 772.7 692 60.1
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.2e-209 734.2 475 74.1
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 1.7e-197 693.7 480 73.8
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 2.4e-191 673.3 449 75.5
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 7.3e-188 661.8 604 57.6
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 4.8e-187 659.1 408 76.0
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 1.9e-175 620.5 871 40.2
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.8e-165 587.4 378 79.1
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 1.3e-160 571.2 353 80.2
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 1.0e-157 561.6 359 74.1
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 3.1e-154 550.1 858 37.5
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 2.2e-139 500.7 844 34.6
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 7.7e-129 465.7 434 56.0
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 5.5e-119 433.0 330 59.1
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 3.6e-118 430.3 587 46.2
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 1.4e-117 428.3 1002 31.0
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 4.4e-108 396.7 383 58.0
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.3e-99 368.6 263 65.8
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 2.7e-97 360.9 345 52.8
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 7.1e-82 309.7 240 64.6
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 5.6e-79 300.1 218 68.3
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 9.0e-77 292.7 333 47.1
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 9.0e-77 292.7 158 80.4
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 1.0e-72 279.3 181 76.8
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 2.6e-44 184.9 97 88.7
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 4.1e-37 161.0 168 57.7
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 4.1e-37 161.0 113 68.1
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 1.4e-34 152.5 99 76.8
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 2.5e-34 151.8 97 79.4
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 2.3e-32 145.2 98 73.5
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 5.7e-31 140.6 95 73.7
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 2.8e-30 138.3 85 76.5
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.1e-29 134.8 119 56.3
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 2.0e-28 132.1 87 71.3
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 5.9e-28 130.6 117 57.3
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 7.7e-28 130.2 185 47.6
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 7.7e-28 130.2 67 85.1
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.5e-26 125.2 118 62.7
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 9.4e-26 123.2 102 65.7
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 3.6e-25 121.3 96 66.7
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 1.1e-23 116.3 80 67.5
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 2.6e-23 115.2 113 55.8
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 5.7e-23 114.0 103 61.2
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 1.3e-22 112.8 96 62.5
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 8.2e-22 110.2 66 75.8
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 5.9e-20 104.0 104 53.8
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 1.9e-18 99.0 96 56.2
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 7.2e-18 97.1 113 48.7
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 4.0e-16 91.3 52 78.8
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 8.8e-16 90.1 52 76.9
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 2.2e-14 85.5 87 51.7
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 2.2e-14 85.5 87 51.7
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 1.4e-13 82.8 78 57.7
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 1.8e-13 82.4 48 85.4
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 5.3e-13 80.9 50 80.0
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 8.5e-11 73.6 37 94.6
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 5.5e-10 70.9 61 63.9
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 9.4e-10 70.1 85 51.8
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 2.3e-08 65.5 70 51.4
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 3.0e-08 65.1 41 78.0
Rhsim07G0116000 Rhododendron simsii HOM05D000382 ORTHO05D037450 4.8e-06 57.8 82 47.6


User provided reference genes

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