Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0148651 Rosa chinensis HOM05D000428 ORTHO05D005608 4.5e-115 417.9 209 100.0
RcHm_v2.0_Chr2g0148731 Rosa chinensis HOM05D000428 ORTHO05D005608 1.9e-65 253.1 184 75.5
Migut.L00561 Erythranthe guttata HOM05D000428 ORTHO05D005608 1.8e-31 140.2 188 51.1
Dinv39964 Davidia involucrata HOM05D000428 ORTHO05D005608 2.0e-30 136.7 211 45.5
ECA246G0987 Erigeron canadensis HOM05D000428 ORTHO05D005608 5.8e-30 135.2 210 46.7
HanXRQChr05g0157731 Helianthus annuus HOM05D000428 ORTHO05D005608 7.6e-30 134.8 210 46.7
Lsat_1_v5_gn_5_24320 Lactuca sativa HOM05D000428 ORTHO05D005608 7.6e-30 134.8 210 46.7
Potri.007G028300 Populus trichocarpa HOM05D000428 ORTHO05D005608 9.9e-30 134.4 210 47.6
AUR62003178 Chenopodium quinoa HOM05D000428 ORTHO05D005608 1.3e-29 134.0 210 46.2
SGA_v2.0_scaffold85G26723 Striga asiatica HOM05D000428 ORTHO05D005608 1.3e-29 134.0 210 46.2
Actinidia35650 Actinidia chinensis HOM05D000428 ORTHO05D005608 1.7e-29 133.7 210 46.2
Ah.03g139440 Amaranthus hybridus HOM05D000428 ORTHO05D005608 1.7e-29 133.7 210 45.7
EL10Ac6g14921 Beta vulgaris HOM05D000428 ORTHO05D005608 2.2e-29 133.3 210 46.2
Gohir.A10G094825 Gossypium hirsutum HOM05D000428 ORTHO05D005608 2.2e-29 133.3 210 46.2
Gohir.D10G093100 Gossypium hirsutum HOM05D000428 ORTHO05D005608 2.2e-29 133.3 210 46.2
Gorai.011G102300 Gossypium raimondii HOM05D000428 ORTHO05D005608 2.2e-29 133.3 210 46.2
Manes.02G141500 Manihot esculenta HOM05D000428 ORTHO05D005608 2.2e-29 133.3 210 47.1
Prupe.2G134600 Prunus persica HOM05D000428 ORTHO05D005608 2.2e-29 133.3 210 46.2
RcHm_v2.0_Chr1g0348441 Rosa chinensis HOM05D000428 ORTHO05D005608 2.2e-29 133.3 210 46.2
AUR62007997 Chenopodium quinoa HOM05D000428 ORTHO05D005608 2.9e-29 132.9 210 46.7
PGR044G2753 Punica granatum HOM05D000428 ORTHO05D005608 2.9e-29 132.9 210 45.7
Hund14143 Selenicereus undatus HOM05D000428 ORTHO05D005608 2.9e-29 132.9 210 45.2
arahy.Tifrunner.gnm1.ann1.FMI53U Arachis hypogaea HOM05D000428 ORTHO05D005608 3.8e-29 132.5 210 45.7
CSS0045131 Camellia sinensis var. sinensis HOM05D000428 ORTHO05D005608 3.8e-29 132.5 210 45.7
CiPaw.01G035300 Carya illinoinensis HOM05D000428 ORTHO05D005608 3.8e-29 132.5 217 44.7
Eucgr.H02772 Eucalyptus grandis HOM05D000428 ORTHO05D005608 3.8e-29 132.5 210 46.2
Oeu037891.1 Olea europaea HOM05D000428 ORTHO05D005608 3.8e-29 132.5 210 45.7
ATR0733G122 Amborella trichopoda HOM05D000428 ORTHO05D005608 4.9e-29 132.1 210 45.2
CANSAT01G1769 Cannabis sativa HOM05D000428 ORTHO05D005608 4.9e-29 132.1 210 45.7
Cpa.g.sc44.55 Carica papaya HOM05D000428 ORTHO05D005608 4.9e-29 132.1 210 45.7
Ciclev10025862m.g Citrus clementina HOM05D000428 ORTHO05D005608 4.9e-29 132.1 210 45.7
Duzib264G0582 Durio zibethinus HOM05D000428 ORTHO05D005608 4.9e-29 132.1 210 46.7
FvH4_7g10600 Fragaria vesca HOM05D000428 ORTHO05D005608 4.9e-29 132.1 210 45.7
FAN01G3018 Fragaria x ananassa HOM05D000428 ORTHO05D005608 4.9e-29 132.1 210 45.7
FAN06G0286 Fragaria x ananassa HOM05D000428 ORTHO05D005608 4.9e-29 132.1 210 45.7
FAN06G3568 Fragaria x ananassa HOM05D000428 ORTHO05D005608 4.9e-29 132.1 210 45.7
FAN10G3598 Fragaria x ananassa HOM05D000428 ORTHO05D005608 4.9e-29 132.1 210 45.7
Lj4C198T4 Lonicera japonica HOM05D000428 ORTHO05D005608 4.9e-29 132.1 210 45.7
MD07G1111200 Malus domestica HOM05D000428 ORTHO05D005608 4.9e-29 132.1 210 45.7
Sc03g0000830 Simmondsia chinensis HOM05D000428 ORTHO05D005608 4.9e-29 132.1 210 45.7
vmacro17854 Vaccinium macrocarpon HOM05D000428 ORTHO05D005608 4.9e-29 132.1 222 45.5
Aqoxy5G01673 Aquilegia oxysepala HOM05D000428 ORTHO05D005608 6.4e-29 131.7 210 45.7
MSTRG.23540 Avicennia marina HOM05D000428 ORTHO05D005608 6.4e-29 131.7 210 45.7
COL.COLO4_22108 Corchorus olitorius HOM05D000428 ORTHO05D005608 6.4e-29 131.7 210 45.7
Haze_25371 Corylus avellana HOM05D000428 ORTHO05D005608 6.4e-29 131.7 210 45.7
Peaxi162Scf00759g00212 Petunia axillaris HOM05D000428 ORTHO05D005608 6.4e-29 131.7 210 45.7
Thecc.01G038800 Theobroma cacao HOM05D000428 ORTHO05D005608 6.4e-29 131.7 210 45.7
GSVIVG01018991001 Vitis vinifera HOM05D000428 ORTHO05D005608 6.4e-29 131.7 210 45.2
CDE04G3638 Ceratophyllum demersum HOM05D000428 ORTHO05D005608 8.4e-29 131.3 210 45.2
Aa31LG8G15550 Aethionema arabicum HOM05D000428 ORTHO05D005608 1.1e-28 131.0 218 45.4
CSS0012257 Camellia sinensis var. sinensis HOM05D000428 ORTHO05D005608 1.1e-28 131.0 210 45.7
CSS0018038 Camellia sinensis var. sinensis HOM05D000428 ORTHO05D005608 1.1e-28 131.0 210 45.7
CiPaw.02G015800 Carya illinoinensis HOM05D000428 ORTHO05D005608 1.1e-28 131.0 210 46.2
Cc07_g09270 Coffea canephora HOM05D000428 ORTHO05D005608 1.1e-28 131.0 210 45.7
Duzib147G0139 Durio zibethinus HOM05D000428 ORTHO05D005608 1.1e-28 131.0 217 44.2
MBI16_g35646_MAGBIO Magnolia biondii HOM05D000428 ORTHO05D005608 1.1e-28 131.0 210 45.2
Carub.0003s3271 Capsella rubella HOM05D000428 ORTHO05D005608 1.4e-28 130.6 218 45.4
Nitab4.5_0001456g0190 Nicotiana tabacum HOM05D000428 ORTHO05D005608 1.4e-28 130.6 210 45.2
Nitab4.5_0003968g0050 Nicotiana tabacum HOM05D000428 ORTHO05D005608 1.4e-28 130.6 210 45.2
Hund16583 Selenicereus undatus HOM05D000428 ORTHO05D005608 1.4e-28 130.6 210 45.7
HPP92_009245 Vanilla planifolia HOM05D000428 ORTHO05D005608 1.4e-28 130.6 210 45.2
Migut.L00293 Erythranthe guttata HOM05D000428 ORTHO05D005608 1.9e-28 130.2 210 45.2
PGSC0003DMG400008934 Solanum tuberosum HOM05D000428 ORTHO05D005608 2.4e-28 129.8 210 45.2
TWI09G0303 Tripterygium wilfordii HOM05D000428 ORTHO05D005608 2.4e-28 129.8 217 43.3
TAR376G0105 Trochodendron aralioides HOM05D000428 ORTHO05D005608 2.4e-28 129.8 210 44.8
Lalb_Chr03g0043151 Lupinus albus HOM05D000428 ORTHO05D005608 3.2e-28 129.4 211 45.5
Os10g0457000 Oryza sativa ssp. japonica HOM05D000428 ORTHO05D005608 3.2e-28 129.4 210 44.3
THA.LOC104807442 Tarenaya hassleriana HOM05D000428 ORTHO05D005608 3.2e-28 129.4 210 46.2
TWI53G1177 Tripterygium wilfordii HOM05D000428 ORTHO05D005608 3.2e-28 129.4 217 43.3
Cfa018514 Carpinus fangiana HOM05D000428 ORTHO05D005608 4.2e-28 129.0 210 45.2
Solyc03g118800.3 Solanum lycopersicum HOM05D000428 ORTHO05D005608 5.4e-28 128.6 211 45.0
Sopen03g037750 Solanum pennellii HOM05D000428 ORTHO05D005608 5.4e-28 128.6 211 45.0
PGSC0003DMG400005746 Solanum tuberosum HOM05D000428 ORTHO05D005608 5.4e-28 128.6 210 44.8
Ca_17089_v3 Cicer arietinum L. HOM05D000428 ORTHO05D005608 7.1e-28 128.3 211 45.0
Thhalv10022741m.g Eutrema salsugineum HOM05D000428 ORTHO05D005608 7.1e-28 128.3 218 45.0
Glyma.12G240700 Glycine max HOM05D000428 ORTHO05D005608 7.1e-28 128.3 210 44.8
Mapoly0043s0056 Marchantia polymorpha HOM05D000428 ORTHO05D005608 7.1e-28 128.3 210 43.8
Medtr3g065190 Medicago truncatula HOM05D000428 ORTHO05D005608 7.1e-28 128.3 211 45.0
Phvul.011G214800 Phaseolus vulgaris HOM05D000428 ORTHO05D005608 7.1e-28 128.3 211 45.0
Psat5g120280 Pisum sativum HOM05D000428 ORTHO05D005608 7.1e-28 128.3 211 45.0
THA.LOC104819794 Tarenaya hassleriana HOM05D000428 ORTHO05D005608 7.1e-28 128.3 211 46.0
TPR.G24896 Trifolium pratense HOM05D000428 ORTHO05D005608 7.1e-28 128.3 211 45.0
unitig_736.g22538 Utricularia gibba HOM05D000428 ORTHO05D005608 7.1e-28 128.3 210 44.8
VMungo1127G1890 Vigna mungo HOM05D000428 ORTHO05D005608 7.1e-28 128.3 211 45.0
CDE07G0828 Ceratophyllum demersum HOM05D000428 ORTHO05D005608 9.3e-28 127.9 210 44.8
Sp3g31970 Schrenkiella parvula HOM05D000428 ORTHO05D005608 9.3e-28 127.9 218 44.5
Sed0010481 Sechium edule HOM05D000428 ORTHO05D005608 9.3e-28 127.9 218 42.7
CARHR109120 Cardamine hirsuta HOM05D000428 ORTHO05D005608 1.2e-27 127.5 218 44.0
ClCG05G007140 Citrullus lanatus HOM05D000428 ORTHO05D005608 1.2e-27 127.5 210 43.8
CsaV3_3G015880 Cucumis sativus L. HOM05D000428 ORTHO05D005608 1.2e-27 127.5 210 43.8
DCAR_025927 Daucus carota HOM05D000428 ORTHO05D005608 1.2e-27 127.5 210 44.3
PSO675G4237 Papaver somniferum HOM05D000428 ORTHO05D005608 1.2e-27 127.5 210 45.2
CBR_g39039 Chara braunii HOM05D000428 ORTHO05D005608 1.6e-27 127.1 210 42.9
MELO3C006787.2 Cucumis melo HOM05D000428 ORTHO05D005608 1.6e-27 127.1 210 44.3
Glyma.09G001000 Glycine max HOM05D000428 ORTHO05D005608 1.6e-27 127.1 211 44.5
Lj3g0014328 Lotus japonicus HOM05D000428 ORTHO05D005608 1.6e-27 127.1 210 44.3
Zm00001eb222330 Zea mays HOM05D000428 ORTHO05D005608 2.1e-27 126.7 210 43.8
PSO541G5970 Papaver somniferum HOM05D000428 ORTHO05D005608 2.7e-27 126.3 210 44.8
TAR625G0488 Trochodendron aralioides HOM05D000428 ORTHO05D005608 2.7e-27 126.3 210 43.8
AL3G51840 Arabidopsis lyrata HOM05D000428 ORTHO05D005608 3.5e-27 125.9 218 43.1
AT2G18510 Arabidopsis thaliana HOM05D000428 ORTHO05D005608 6.0e-27 125.2 211 44.5
Pp3c12_13810 Physcomitrium patens HOM05D000428 ORTHO05D005608 6.0e-27 125.2 210 42.9
BcaB07g31658 Brassica carinata HOM05D000428 ORTHO05D005608 2.3e-26 123.2 224 39.7
BcaB03g16632 Brassica carinata HOM05D000428 ORTHO05D005608 3.9e-26 122.5 218 43.1
BcaC04g22900 Brassica carinata HOM05D000428 ORTHO05D005608 5.1e-26 122.1 218 42.7
C09p14060 Brassica napus HOM05D000428 ORTHO05D005608 5.1e-26 122.1 218 42.7
BolC9t54303H Brassica oleracea HOM05D000428 ORTHO05D005608 5.1e-26 122.1 218 42.7
FvH4_7g22430 Fragaria vesca HOM05D000428 ORTHO05D005608 5.1e-26 122.1 217 41.5
BcaB07g31661 Brassica carinata HOM05D000428 ORTHO05D005608 6.7e-26 121.7 218 43.1
A09p11940 Brassica napus HOM05D000428 ORTHO05D005608 6.7e-26 121.7 218 42.7
BraA09t36839Z Brassica rapa HOM05D000428 ORTHO05D005608 6.7e-26 121.7 218 42.7
A07p02180 Brassica napus HOM05D000428 ORTHO05D005608 1.1e-25 120.9 211 44.1
Carub.0124s0001 Capsella rubella HOM05D000428 ORTHO05D005608 1.5e-25 120.6 193 42.0
C07p04290 Brassica napus HOM05D000428 ORTHO05D005608 1.9e-25 120.2 211 43.6
BolC7t40824H Brassica oleracea HOM05D000428 ORTHO05D005608 1.9e-25 120.2 211 43.6
Sabra05G0102900 Salix brachista HOM05D000428 ORTHO05D005608 2.5e-25 119.8 211 44.5
Cre06.g254800 Chlamydomonas reinhardtii HOM05D000428 ORTHO05D005608 4.3e-25 119.0 207 41.1
TAR628G0051 Trochodendron aralioides HOM05D000428 ORTHO05D005608 4.3e-25 119.0 218 42.7
arahy.Tifrunner.gnm1.ann1.IVLA97 Arachis hypogaea HOM05D000428 ORTHO05D005608 7.4e-25 118.2 205 43.9
Thhalv10023032m.g Eutrema salsugineum HOM05D000428 ORTHO05D005608 3.7e-24 115.9 198 42.4
BraA07t28012Z Brassica rapa HOM05D000428 ORTHO05D005608 8.1e-24 114.8 211 43.1
MBI16_g36970_MAGBIO Magnolia biondii HOM05D000428 ORTHO05D005608 4.0e-23 112.5 183 45.4
Actinidia19172 Actinidia chinensis HOM05D000428 ORTHO05D005608 5.3e-23 112.1 154 47.4
Atru.chr12.2192 Acer truncatum HOM05D000428 ORTHO05D005608 9.0e-23 111.3 152 47.4
arahy.Tifrunner.gnm1.ann1.57NA14 Arachis hypogaea HOM05D000428 ORTHO05D005608 9.0e-23 111.3 225 40.0
Nn1g04186 Nelumbo nucifera HOM05D000428 ORTHO05D005608 9.0e-23 111.3 183 44.8
Dinv26816 Davidia involucrata HOM05D000001 ORTHO05D010258 1.2e-22 110.9 166 44.0
Cfa017067 Carpinus fangiana HOM05D000428 ORTHO05D005608 2.0e-22 110.2 186 44.1
Sed0000925 Sechium edule HOM05D000428 ORTHO05D005608 4.5e-22 109.0 154 44.8
Potri.005G125300 Populus trichocarpa HOM05D000428 ORTHO05D005608 7.6e-22 108.2 202 42.6
QL06p045519 Quercus lobata HOM05D000428 ORTHO05D005608 7.6e-22 108.2 260 36.9
RcHm_v2.0_Chr2g0096981 Rosa chinensis HOM05D000428 ORTHO05D005608 1.7e-21 107.1 210 39.5
MCO05G316 Micromonas commoda HOM05D000428 ORTHO05D005608 2.9e-21 106.3 207 38.6
Oeu021560.1 Olea europaea HOM05D000428 ORTHO05D005608 2.9e-21 106.3 160 45.0
Carub.0003s2855 Capsella rubella HOM05D000428 ORTHO05D005608 8.4e-21 104.8 215 36.7
AL3G46120 Arabidopsis lyrata HOM05D000428 ORTHO05D005608 2.1e-19 100.1 207 37.2
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 1.1e-17 94.4 139 48.9
BcaC06g36421 Brassica carinata HOM05D000428 ORTHO05D005608 7.4e-17 91.7 212 38.2
FAN01G1501 Fragaria x ananassa HOM05D000428 ORTHO05D005608 1.2e-14 84.3 242 33.9
Haze_27247 Corylus avellana HOM05D000428 ORTHO05D005608 1.5e-14 84.0 155 39.4
RcHm_v2.0_Chr5g0061171 Rosa chinensis HOM05D000428 ORTHO05D005608 2.0e-14 83.6 89 58.4
PRCOL_00003038 Prasinoderma coloniale HOM05D000428 ORTHO05D005608 1.0e-13 81.3 137 42.3
FvH4_7g10540 Fragaria vesca HOM05D000428 ORTHO05D005608 5.5e-12 75.5 87 52.9
RcHm_v2.0_Chr1g0331871 Rosa chinensis HOM05D000428 ORTHO05D346801 2.1e-11 73.6 51 72.5
Lsat_1_v5_gn_4_2681 Lactuca sativa HOM05D000428 ORTHO05D036455 2.3e-10 70.1 80 51.2
BcaC08g46293 Brassica carinata HOM05D015772 ORTHO05D020004 8.7e-10 68.2 90 46.7
BolC6t39265H Brassica oleracea HOM05D015772 ORTHO05D020004 8.7e-10 68.2 90 46.7
C06p41600 Brassica napus HOM05D015772 ORTHO05D020004 1.1e-09 67.8 87 48.3
BraA05t21406Z Brassica rapa HOM05D015772 ORTHO05D020004 2.5e-09 66.6 87 49.4
FAN01G0105 Fragaria x ananassa HOM05D000428 ORTHO05D005608 2.5e-09 66.6 97 42.3
Sabra07G0024500 Salix brachista HOM05D000428 ORTHO05D005608 2.2e-08 63.5 85 50.6
Peaxi162Scf01050g00225 Petunia axillaris HOM05D059219 ORTHO05D036942 1.4e-07 60.8 83 48.2
SHI22921 Sapria himalayana HOM05D000428 ORTHO05D005608 5.3e-07 58.9 74 48.6
SMO356G0479 Selaginella moellendorffii HOM05D000428 ORTHO05D005608 5.3e-07 58.9 157 27.4
Peaxi162Scf00285g00935 Petunia axillaris HOM05D000428 ORTHO05D036942 1.5e-06 57.4 40 70.0
Zm00001eb046700 Zea mays HOM05D000428 ORTHO05D005608 1.5e-06 57.4 85 42.4
AagrBONN_evm.TU.Sc2ySwM_117.1742 Anthoceros agrestis HOM05D000428 ORTHO05D005608 2.0e-06 57.0 85 44.7
AagrBONN_evm.TU.Sc2ySwM_228.3498 Anthoceros agrestis HOM05D000428 ORTHO05D005608 2.0e-06 57.0 85 45.9


User provided reference genes

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