Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0136621 Rosa chinensis HOM05D005526 ORTHO05D006802 6.6e-199 697.2 360 100.0
FvH4_6g30340 Fragaria vesca HOM05D005526 ORTHO05D006802 2.2e-170 602.4 360 88.6
FAN02G2127 Fragaria x ananassa HOM05D005526 ORTHO05D006802 8.4e-170 600.5 360 88.1
FAN09G0405 Fragaria x ananassa HOM05D005526 ORTHO05D006802 5.1e-159 564.7 362 84.0
MD09G1221000 Malus domestica HOM05D005526 ORTHO05D006802 4.8e-157 558.1 357 82.1
Prupe.3G079900 Prunus persica HOM05D005526 ORTHO05D006802 9.0e-156 553.9 370 80.5
MD17G1204400 Malus domestica HOM05D005526 ORTHO05D006802 7.4e-150 534.3 431 69.1
Dinv38097 Davidia involucrata HOM05D005526 ORTHO05D006802 1.7e-146 523.1 359 76.6
GSVIVG01017251001 Vitis vinifera HOM05D005526 ORTHO05D006802 1.4e-145 520.0 357 75.4
Cfa002011 Carpinus fangiana HOM05D005526 ORTHO05D006802 1.6e-144 516.5 360 75.6
Atru.chr1.3093 Acer truncatum HOM05D005526 ORTHO05D006802 1.5e-142 510.0 358 74.6
TAR383G0281 Trochodendron aralioides HOM05D005526 ORTHO05D006802 1.7e-141 506.5 359 75.2
Lj5C68G25 Lonicera japonica HOM05D005526 ORTHO05D006802 5.9e-139 498.0 360 72.5
Actinidia08810 Actinidia chinensis HOM05D005526 ORTHO05D006802 7.7e-139 497.7 356 73.3
Glyma.15G010400 Glycine max HOM05D005526 ORTHO05D006802 2.2e-138 496.1 357 72.8
CSS0037293 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 2.9e-138 495.7 358 72.3
CiPaw.01G244400 Carya illinoinensis HOM05D005526 ORTHO05D006802 1.1e-137 493.8 359 72.1
Glyma.13G363400 Glycine max HOM05D005526 ORTHO05D006802 5.5e-137 491.5 357 72.0
Ciclev10025661m.g Citrus clementina HOM05D005526 ORTHO05D006802 1.4e-135 486.9 352 72.7
Thecc.06G073100 Theobroma cacao HOM05D005526 ORTHO05D006802 1.8e-135 486.5 359 72.7
TWI18G0833 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 1.8e-135 486.5 357 73.1
Manes.04G116500 Manihot esculenta HOM05D005526 ORTHO05D006802 3.0e-135 485.7 359 72.4
Duzib235G1092 Durio zibethinus HOM05D005526 ORTHO05D006802 6.7e-135 484.6 359 72.1
TWI75G1755 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 5.7e-134 481.5 357 73.1
Lj3g0017842 Lotus japonicus HOM05D005526 ORTHO05D006802 2.2e-133 479.6 353 70.5
CSS0003126 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 2.8e-133 479.2 361 71.7
Potri.001G172800 Populus trichocarpa HOM05D005526 ORTHO05D006802 1.1e-132 477.2 365 71.8
Nn2g11952 Nelumbo nucifera HOM05D005526 ORTHO05D006802 1.4e-132 476.9 359 71.6
Lalb_Chr14g0373681 Lupinus albus HOM05D005526 ORTHO05D006802 1.8e-132 476.5 357 71.4
Gohir.D06G117200 Gossypium hirsutum HOM05D005526 ORTHO05D006802 3.1e-132 475.7 359 71.3
Gorai.010G134800 Gossypium raimondii HOM05D005526 ORTHO05D006802 9.1e-132 474.2 359 71.0
Cpa.g.sc336.8 Carica papaya HOM05D005526 ORTHO05D006802 1.6e-131 473.4 353 71.4
Psat5g300440 Pisum sativum HOM05D005526 ORTHO05D006802 1.6e-131 473.4 358 70.4
CANSAT56G0953 Cannabis sativa HOM05D005526 ORTHO05D006802 2.2e-130 469.5 354 72.6
Ca_01085_v3 Cicer arietinum L. HOM05D005526 ORTHO05D006802 5.0e-130 468.4 360 70.0
Gohir.A06G112600 Gossypium hirsutum HOM05D005526 ORTHO05D006802 1.9e-129 466.5 359 70.2
Rhsim12G0193000 Rhododendron simsii HOM05D005526 ORTHO05D006802 2.5e-129 466.1 439 60.8
QL05p027824 Quercus lobata HOM05D005526 ORTHO05D006802 7.2e-129 464.5 415 62.7
arahy.Tifrunner.gnm1.ann1.FYL3MV Arachis hypogaea HOM05D005526 ORTHO05D006802 1.0e-127 460.7 358 68.7
vmacro16915 Vaccinium macrocarpon HOM05D005526 ORTHO05D006802 1.0e-127 460.7 455 59.1
COL.COLO4_12896 Corchorus olitorius HOM05D005526 ORTHO05D006802 4.0e-127 458.8 364 68.7
MBI01_g11875_MAGBIO Magnolia biondii HOM05D005526 ORTHO05D006802 9.8e-126 454.1 361 69.3
Phvul.005G174900 Phaseolus vulgaris HOM05D005526 ORTHO05D006802 9.8e-126 454.1 358 67.9
CsaV3_4G001390 Cucumis sativus L. HOM05D005526 ORTHO05D006802 1.7e-125 453.4 357 66.4
MELO3C017901.2 Cucumis melo HOM05D005526 ORTHO05D006802 4.8e-125 451.8 356 66.3
Medtr2g103110 Medicago truncatula HOM05D005526 ORTHO05D006802 8.3e-125 451.1 373 67.3
Eucgr.J03045 Eucalyptus grandis HOM05D005526 ORTHO05D006802 1.3e-122 443.7 357 68.6
TPR.G37284 Trifolium pratense HOM05D005526 ORTHO05D006802 2.9e-122 442.6 364 66.5
Sed0002477 Sechium edule HOM05D005526 ORTHO05D006802 3.8e-122 442.2 356 64.9
VMungo1080G0636 Vigna mungo HOM05D005526 ORTHO05D006802 1.9e-121 439.9 352 66.2
ECA234G2940 Erigeron canadensis HOM05D005526 ORTHO05D006802 9.4e-121 437.6 359 66.6
Aqoxy7G02084 Aquilegia oxysepala HOM05D005526 ORTHO05D006802 1.4e-119 433.7 358 67.6
HanXRQChr10g0303071 Helianthus annuus HOM05D005526 ORTHO05D006802 1.2e-118 430.6 359 66.3
PSO170G3249 Papaver somniferum HOM05D005526 ORTHO05D006802 3.4e-118 429.1 358 64.8
Cc04_g04020 Coffea canephora HOM05D005526 ORTHO05D006802 4.4e-118 428.7 360 65.6
Solyc06g067990.3 Solanum lycopersicum HOM05D005526 ORTHO05D006802 4.4e-118 428.7 360 65.6
THA.LOC104812497 Tarenaya hassleriana HOM05D005526 ORTHO05D006802 2.2e-117 426.4 354 67.5
CAN.G395.46 Capsicum annuum HOM05D005526 ORTHO05D006802 6.3e-117 424.9 356 65.2
PGR031G1627 Punica granatum HOM05D005526 ORTHO05D006802 1.1e-116 424.1 369 64.0
DCAR_025483 Daucus carota HOM05D005526 ORTHO05D006802 1.2e-115 420.6 361 63.2
Sopen06g025270 Solanum pennellii HOM05D005526 ORTHO05D006802 2.0e-115 419.9 357 65.0
Oeu063802.2 Olea europaea HOM05D005526 ORTHO05D006802 2.9e-114 416.0 354 66.7
Dinv30571 Davidia involucrata HOM05D005526 ORTHO05D006802 2.5e-113 412.9 281 75.1
SalBow2G2365 Salvia bowleyana HOM05D005526 ORTHO05D006802 4.2e-113 412.1 356 64.0
Hund06580 Selenicereus undatus HOM05D005526 ORTHO05D006802 9.5e-113 411.0 352 62.5
FAN14G4362 Fragaria x ananassa HOM05D005526 ORTHO05D006802 2.1e-112 409.8 303 77.9
Sp5g35600 Schrenkiella parvula HOM05D005526 ORTHO05D006802 4.7e-112 408.7 353 63.5
MSTRG.9436 Avicennia marina HOM05D005526 ORTHO05D006802 1.5e-110 403.7 357 62.2
AUR62016379 Chenopodium quinoa HOM05D005526 ORTHO05D006802 1.5e-110 403.7 355 62.8
Thhalv10018648m.g Eutrema salsugineum HOM05D005526 ORTHO05D006802 4.4e-110 402.1 353 63.5
AL3G17940 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 2.2e-109 399.8 352 62.2
Migut.D01055 Erythranthe guttata HOM05D005526 ORTHO05D006802 1.4e-108 397.1 357 61.6
EL10Ac9g21940 Beta vulgaris HOM05D005526 ORTHO05D006802 1.8e-108 396.7 355 62.0
AL2G41300 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 2.4e-108 396.4 352 61.9
BcaB02g07290 Brassica carinata HOM05D005526 ORTHO05D006802 1.6e-107 393.7 352 61.6
CARHR074270 Cardamine hirsuta HOM05D005526 ORTHO05D006802 5.9e-107 391.7 354 60.7
Sc10g0005720 Simmondsia chinensis HOM05D005526 ORTHO05D006802 1.5e-105 387.1 354 60.7
Carub.0002s2731 Capsella rubella HOM05D005526 ORTHO05D006802 4.3e-105 385.6 317 64.7
A07p26570 Brassica napus HOM05D005526 ORTHO05D006802 1.2e-104 384.0 352 61.1
BraA07t30300Z Brassica rapa HOM05D005526 ORTHO05D006802 1.2e-104 384.0 353 60.9
BcaC08g45297 Brassica carinata HOM05D005526 ORTHO05D006802 1.0e-103 380.9 353 60.1
C06p28990 Brassica napus HOM05D005526 ORTHO05D006802 1.4e-103 380.6 353 60.3
BolC6t38065H Brassica oleracea HOM05D005526 ORTHO05D006802 3.1e-103 379.4 353 60.1
SGA_v2.0_scaffold16G07615 Striga asiatica HOM05D005526 ORTHO05D006802 3.1e-103 379.4 328 62.5
AT3G06820 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 4.0e-103 379.0 355 61.4
arahy.Tifrunner.gnm1.ann1.IMA97E Arachis hypogaea HOM05D005526 ORTHO05D006802 5.2e-103 378.6 379 58.6
ClCG07G012810 Citrullus lanatus HOM05D005526 ORTHO05D006802 2.6e-102 376.3 327 62.7
AT1G80210 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 3.4e-102 375.9 294 67.0
CiPaw.02G154800 Carya illinoinensis HOM05D005526 ORTHO05D006802 6.0e-99 365.2 244 78.3
Oeu052283.1 Olea europaea HOM05D005526 ORTHO05D006802 1.1e-97 360.9 329 64.4
Lsat_1_v5_gn_5_132520 Lactuca sativa HOM05D005526 ORTHO05D006802 3.4e-94 349.4 343 60.6
unitig_899.g14780 Utricularia gibba HOM05D005526 ORTHO05D006802 4.4e-94 349.0 317 58.4
Aa31LG4G500 Aethionema arabicum HOM05D005526 ORTHO05D006802 1.2e-91 340.9 321 59.5
Peaxi162Scf00207g00731 Petunia axillaris HOM05D005526 ORTHO05D006802 7.8e-91 338.2 360 52.8
AUR62011560 Chenopodium quinoa HOM05D005526 ORTHO05D006802 1.7e-90 337.0 321 59.8
CDE02G1452 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 6.6e-90 335.1 347 57.3
Nitab4.5_0000620g0060 Nicotiana tabacum HOM05D005526 ORTHO05D006802 6.2e-88 328.6 333 57.4
ATR1156G007 Amborella trichopoda HOM05D005526 ORTHO05D006802 8.1e-88 328.2 361 55.7
Zm00001eb294490 Zea mays HOM05D005526 ORTHO05D006802 1.4e-87 327.4 354 54.0
Os05g0542600 Oryza sativa ssp. japonica HOM05D005526 ORTHO05D006802 4.0e-87 325.9 350 52.6
Nitab4.5_0013710g0010 Nicotiana tabacum HOM05D005526 ORTHO05D006802 6.8e-87 325.1 358 54.7
HPP92_009843 Vanilla planifolia HOM05D005526 ORTHO05D006802 1.2e-86 324.3 359 52.4
Ah.01g020810 Amaranthus hybridus HOM05D005526 ORTHO05D006802 1.3e-82 310.8 324 57.7
Haze_16513 Corylus avellana HOM05D005526 ORTHO05D006802 2.5e-81 306.6 224 72.3
SEGI_35764 Sequoiadendron giganteum HOM05D005526 ORTHO05D006802 1.4e-79 300.8 361 49.3
Mapoly0053s0043 Marchantia polymorpha HOM05D005526 ORTHO05D006802 1.4e-63 247.7 365 42.5
Pp3c27_4740 Physcomitrium patens HOM05D005526 ORTHO05D006802 3.8e-61 239.6 350 44.0
CDE01G0292 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 4.3e-57 226.1 346 44.8
SGA_v2.0_scaffold37G14789 Striga asiatica HOM05D005526 ORTHO05D006802 6.2e-56 222.2 299 48.2
CBR_g46861 Chara braunii HOM05D005526 ORTHO05D006802 2.4e-55 220.3 347 39.2
AagrBONN_evm.TU.Sc2ySwM_368.2431 Anthoceros agrestis HOM05D005526 ORTHO05D006802 3.7e-48 196.4 336 39.9
SMO196G0028 Selaginella moellendorffii HOM05D005526 ORTHO05D006802 1.2e-46 191.4 303 37.6
Oeu014842.2 Olea europaea HOM05D005526 ORTHO05D006802 2.9e-45 186.8 192 56.2
Sed0012845 Sechium edule HOM05D005526 ORTHO05D006802 1.5e-41 174.5 321 39.6
Haze_16512 Corylus avellana HOM05D005526 ORTHO05D006802 2.5e-36 157.1 103 79.6
Zm00001eb342510 Zea mays HOM05D005526 ORTHO05D006802 9.4e-36 155.2 137 62.0
SalBow8G0881 Salvia bowleyana HOM05D005526 ORTHO05D006802 1.4e-18 98.2 103 58.3
Cre11.g475400 Chlamydomonas reinhardtii HOM05D005526 ORTHO05D006802 2.3e-18 97.4 322 25.8
Pp3c25_2940 Physcomitrium patens HOM05D005526 ORTHO05D311957 6.1e-11 72.8 90 45.6
Pp3c6_24500 Physcomitrium patens HOM05D005526 ORTHO05D006802 9.1e-07 58.9 75 45.3


User provided reference genes

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