Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0379161 Rosa chinensis HOM05D002159 ORTHO05D005625 1.9e-101 372.5 186 100.0
RcHm_v2.0_Chr1g0377681 Rosa chinensis HOM05D002159 ORTHO05D005625 9.4e-56 220.7 198 62.1
FvH4_7g29660 Fragaria vesca HOM05D002159 ORTHO05D005625 2.3e-54 216.1 198 61.1
FAN06G4426 Fragaria x ananassa HOM05D002159 ORTHO05D005625 2.3e-54 216.1 198 61.1
FAN03G0857 Fragaria x ananassa HOM05D002159 ORTHO05D005625 8.8e-54 214.2 197 60.9
FAN03G1172 Fragaria x ananassa HOM05D002159 ORTHO05D005625 8.8e-54 214.2 197 60.9
FAN01G0872 Fragaria x ananassa HOM05D002159 ORTHO05D005625 1.1e-53 213.8 204 59.3
FAN06G3579 Fragaria x ananassa HOM05D002159 ORTHO05D005625 1.5e-53 213.4 198 60.6
FAN10G0118 Fragaria x ananassa HOM05D002159 ORTHO05D005625 1.7e-52 209.9 198 60.1
MD07G1272900 Malus domestica HOM05D002159 ORTHO05D005625 2.4e-51 206.1 200 58.0
MD01G1203600 Malus domestica HOM05D002159 ORTHO05D005625 4.1e-51 205.3 198 58.1
Prupe.2G296200 Prunus persica HOM05D002159 ORTHO05D005625 4.1e-51 205.3 200 57.5
arahy.Tifrunner.gnm1.ann1.F9YRCX Arachis hypogaea HOM05D002159 ORTHO05D005625 1.0e-49 200.7 191 57.1
Thecc.03G179100 Theobroma cacao HOM05D002159 ORTHO05D005625 1.0e-49 200.7 200 55.5
Ciclev10004414m.g Citrus clementina HOM05D002159 ORTHO05D005625 1.3e-49 200.3 200 56.0
CsaV3_3G017220 Cucumis sativus L. HOM05D002159 ORTHO05D005625 1.3e-49 200.3 200 57.5
MELO3C006919.2 Cucumis melo HOM05D002159 ORTHO05D005625 1.7e-49 199.9 200 57.5
PGR142G0288 Punica granatum HOM05D002159 ORTHO05D005625 2.2e-49 199.5 200 56.0
ClCG05G008140 Citrullus lanatus HOM05D002201 ORTHO05D005625 2.9e-49 199.1 195 57.9
Glyma.09G136900 Glycine max HOM05D002159 ORTHO05D005625 2.9e-49 199.1 198 56.1
Gohir.D12G258000 Gossypium hirsutum HOM05D002159 ORTHO05D005625 2.9e-49 199.1 206 55.3
Gorai.008G276300 Gossypium raimondii HOM05D002159 ORTHO05D005625 2.9e-49 199.1 206 55.3
Duzib084G0847 Durio zibethinus HOM05D002159 ORTHO05D005625 5.0e-49 198.4 198 57.1
Glyma.11G170601 Glycine max HOM05D002159 ORTHO05D005625 5.0e-49 198.4 198 56.1
CANSAT21G0489 Cannabis sativa HOM05D002159 ORTHO05D005625 6.5e-49 198.0 207 57.0
Manes.01G126800 Manihot esculenta HOM05D002159 ORTHO05D005625 8.5e-49 197.6 206 55.8
Duzib205G0713 Durio zibethinus HOM05D002159 ORTHO05D005625 1.1e-48 197.2 203 55.2
Glyma.16G182300 Glycine max HOM05D002159 ORTHO05D005625 1.1e-48 197.2 198 56.1
Lalb_Chr03g0034671 Lupinus albus HOM05D002159 ORTHO05D005625 1.4e-48 196.8 201 56.7
VMungo0464G2116 Vigna mungo HOM05D002159 ORTHO05D005625 1.4e-48 196.8 198 55.6
Gohir.A12G256700 Gossypium hirsutum HOM05D002159 ORTHO05D005625 1.9e-48 196.4 206 54.9
Lj2g0019958 Lotus japonicus HOM05D002159 ORTHO05D005625 9.4e-48 194.1 198 55.6
Nitab4.5_0000084g0030 Nicotiana tabacum HOM05D002159 ORTHO05D005625 1.6e-47 193.4 206 55.8
Ca_14555_v3 Cicer arietinum L. HOM05D002159 ORTHO05D005625 2.1e-47 193.0 206 54.4
TWI34G0379 Tripterygium wilfordii HOM05D002159 ORTHO05D005625 2.1e-47 193.0 200 55.5
HanXRQChr14g0462121 Helianthus annuus HOM05D002159 ORTHO05D005625 2.7e-47 192.6 200 54.5
Peaxi162Scf00444g00532 Petunia axillaris HOM05D002159 ORTHO05D005625 2.7e-47 192.6 200 56.0
Lsat_1_v5_gn_2_132660 Lactuca sativa HOM05D002159 ORTHO05D005625 3.6e-47 192.2 198 55.6
Solyc03g025540.3 Solanum lycopersicum HOM05D002159 ORTHO05D005625 3.6e-47 192.2 200 56.0
CAN.G1175.3 Capsicum annuum HOM05D002159 ORTHO05D005625 4.7e-47 191.8 200 55.0
QL09p013785 Quercus lobata HOM05D002159 ORTHO05D005625 4.7e-47 191.8 200 54.5
Sed0009742 Sechium edule HOM05D002159 ORTHO05D005625 4.7e-47 191.8 198 56.6
Nitab4.5_0004439g0160 Nicotiana tabacum HOM05D002159 ORTHO05D005625 8.0e-47 191.0 201 55.2
Dinv28421 Davidia involucrata HOM05D002159 ORTHO05D005625 1.4e-46 190.3 198 54.5
Thhalv10003707m.g Eutrema salsugineum HOM05D002159 ORTHO05D005625 1.4e-46 190.3 199 53.8
Phvul.004G114000 Phaseolus vulgaris HOM05D002159 ORTHO05D005625 1.4e-46 190.3 198 54.0
A06p34690 Brassica napus HOM05D002159 ORTHO05D005625 1.8e-46 189.9 199 53.8
C07p43800 Brassica napus HOM05D002159 ORTHO05D005625 1.8e-46 189.9 199 53.8
BraA06t26396Z Brassica rapa HOM05D002159 ORTHO05D005625 1.8e-46 189.9 199 53.8
Nn1g01521 Nelumbo nucifera HOM05D002159 ORTHO05D005625 1.8e-46 189.9 206 54.9
Sopen03g004380 Solanum pennellii HOM05D002159 ORTHO05D005625 1.8e-46 189.9 200 55.5
Cc02_g02790 Coffea canephora HOM05D002159 ORTHO05D005625 2.3e-46 189.5 195 55.4
Actinidia25881 Actinidia chinensis HOM05D002159 ORTHO05D005625 3.0e-46 189.1 206 53.9
BolC7t44909H Brassica oleracea HOM05D002159 ORTHO05D005625 3.0e-46 189.1 199 53.8
Medtr1g050492 Medicago truncatula HOM05D002159 ORTHO05D005625 3.9e-46 188.7 201 54.2
vmacro06665 Vaccinium macrocarpon HOM05D002159 ORTHO05D005625 3.9e-46 188.7 198 54.5
AT5G23880 Arabidopsis thaliana HOM05D002159 ORTHO05D005625 5.2e-46 188.3 199 53.8
BcaNung05469 Brassica carinata HOM05D002159 ORTHO05D005625 5.2e-46 188.3 199 53.3
CSS0008751 Camellia sinensis var. sinensis HOM05D002159 ORTHO05D005625 5.2e-46 188.3 206 54.4
CSS0044503 Camellia sinensis var. sinensis HOM05D002159 ORTHO05D005625 5.2e-46 188.3 206 54.4
Oeu028430.1 Olea europaea HOM05D002159 ORTHO05D005625 5.2e-46 188.3 200 53.0
TPR.G8152 Trifolium pratense HOM05D002159 ORTHO05D005625 5.2e-46 188.3 198 54.0
TAR629G0581 Trochodendron aralioides HOM05D002159 ORTHO05D005625 6.7e-46 188.0 198 55.6
AL6G35190 Arabidopsis lyrata HOM05D002159 ORTHO05D005625 8.8e-46 187.6 202 54.0
BcaNung05470 Brassica carinata HOM05D002159 ORTHO05D005625 8.8e-46 187.6 199 52.3
Hund04761 Selenicereus undatus HOM05D002159 ORTHO05D005625 8.8e-46 187.6 198 54.0
THA.LOC104821393 Tarenaya hassleriana HOM05D002159 ORTHO05D005625 8.8e-46 187.6 207 53.1
CiPaw.03G108100 Carya illinoinensis HOM05D002159 ORTHO05D005625 1.5e-45 186.8 200 53.5
Atru.chr1.430 Acer truncatum HOM05D002159 ORTHO05D005625 2.0e-45 186.4 198 53.5
Rhsim03G0187300 Rhododendron simsii HOM05D002159 ORTHO05D005625 2.0e-45 186.4 197 54.3
CARHR189680 Cardamine hirsuta HOM05D002159 ORTHO05D005625 2.6e-45 186.0 202 53.5
Eucgr.K00275 Eucalyptus grandis HOM05D002159 ORTHO05D005625 3.3e-45 185.7 198 55.1
Sp2g23400 Schrenkiella parvula HOM05D002159 ORTHO05D005625 3.3e-45 185.7 202 53.0
Potri.001G231800 Populus trichocarpa HOM05D002159 ORTHO05D005625 4.4e-45 185.3 200 54.0
ECA238G4262 Erigeron canadensis HOM05D002159 ORTHO05D005625 7.4e-45 184.5 206 52.4
GSVIVG01028919001 Vitis vinifera HOM05D002159 ORTHO05D005625 9.7e-45 184.1 206 52.4
Carub.0006s2160 Capsella rubella HOM05D002159 ORTHO05D005625 1.3e-44 183.7 199 52.3
AUR62015961 Chenopodium quinoa HOM05D002159 ORTHO05D005625 2.2e-44 183.0 198 54.5
EL10Ac3g05612 Beta vulgaris HOM05D002159 ORTHO05D005625 2.8e-44 182.6 206 52.9
Actinidia34126 Actinidia chinensis HOM05D002159 ORTHO05D005625 4.8e-44 181.8 206 52.4
CDE06G0059 Ceratophyllum demersum HOM05D002159 ORTHO05D005625 8.2e-44 181.0 195 55.4
HPP92_025730 Vanilla planifolia HOM05D002159 ORTHO05D005625 1.4e-43 180.3 199 53.3
AUR62021167 Chenopodium quinoa HOM05D002159 ORTHO05D005625 1.8e-43 179.9 198 53.5
PSO478G3748 Papaver somniferum HOM05D002159 ORTHO05D005625 1.8e-43 179.9 202 53.0
Zm00001eb162800 Zea mays HOM05D002159 ORTHO05D005625 1.8e-43 179.9 200 54.5
Sc13g0008820 Simmondsia chinensis HOM05D002159 ORTHO05D005625 3.1e-43 179.1 206 51.9
SGA_v2.0_scaffold10G05332 Striga asiatica HOM05D002159 ORTHO05D005625 5.3e-43 178.3 199 52.3
PSO782G0249 Papaver somniferum HOM05D002159 ORTHO05D005625 7.0e-43 177.9 198 51.0
Aqoxy7G00327 Aquilegia oxysepala HOM05D002159 ORTHO05D005625 9.1e-43 177.6 198 52.0
Os09g0569400 Oryza sativa ssp. japonica HOM05D002159 ORTHO05D005625 1.2e-42 177.2 200 55.5
DCAR_026334 Daucus carota HOM05D002159 ORTHO05D005625 3.5e-42 175.6 207 51.7
Haze_13669 Corylus avellana HOM05D002159 ORTHO05D005625 5.0e-41 171.8 184 53.8
Migut.F01111 Erythranthe guttata HOM05D002159 ORTHO05D005625 6.5e-41 171.4 197 50.8
Aa31LG11G3180 Aethionema arabicum HOM05D002159 ORTHO05D005625 3.2e-40 169.1 231 47.2
Sabra16G0139100 Salix brachista HOM05D002159 ORTHO05D005625 4.2e-40 168.7 186 53.2
ATR0680G292 Amborella trichopoda HOM05D002159 ORTHO05D005625 1.6e-39 166.8 194 52.1
Lj8C239G4 Lonicera japonica HOM05D002159 ORTHO05D005625 4.7e-39 165.2 176 52.8
SalBow2G1087 Salvia bowleyana HOM05D002159 ORTHO05D005625 1.0e-38 164.1 151 56.3
Cpa.g.c26789.4 Carica papaya HOM05D002159 ORTHO05D005625 1.4e-38 163.7 173 54.3
Cfa023191 Carpinus fangiana HOM05D002159 ORTHO05D005625 6.7e-38 161.4 178 52.8
HPP92_025733 Vanilla planifolia HOM05D002159 ORTHO05D005625 2.2e-36 156.4 174 52.3
Pp3c9_11100 Physcomitrium patens HOM05D002159 ORTHO05D005625 8.3e-36 154.5 192 48.4
Mapoly0007s0176 Marchantia polymorpha HOM05D002159 ORTHO05D005625 3.5e-34 149.1 190 50.0
AagrBONN_evm.TU.Sc2ySwM_117.3689 Anthoceros agrestis HOM05D002159 ORTHO05D005625 5.9e-34 148.3 186 47.8
Hma1.2p1_1604F.1_g293320 Hydrangea macrophylla HOM05D002159 ORTHO05D005625 1.4e-30 137.1 206 44.2
SMO111G0062 Selaginella moellendorffii HOM05D002159 ORTHO05D005625 3.0e-30 136.0 188 43.1
unitig_26.g10199 Utricularia gibba HOM05D002159 ORTHO05D005625 3.3e-24 115.9 171 42.1
Glyma.11G171002 Glycine max HOM05D002159 ORTHO05D005625 3.0e-22 109.4 66 78.8
FAN18G0300 Fragaria x ananassa HOM05D002159 ORTHO05D005625 4.0e-22 109.0 163 44.2
Psat0s1874g0200 Pisum sativum HOM05D002159 ORTHO05D005625 2.0e-21 106.7 66 77.3
Psat0s2150g0120 Pisum sativum HOM05D002159 ORTHO05D005625 2.0e-21 106.7 66 77.3
MELO3C035667.2 Cucumis melo HOM05D002159 ORTHO05D017878 3.1e-19 99.4 86 61.6
Ah.13g068620 Amaranthus hybridus HOM05D002159 ORTHO05D005625 3.5e-18 95.9 152 40.1
COL.COLO4_28055 Corchorus olitorius HOM05D002159 ORTHO05D017878 1.7e-17 93.6 76 64.5
FvH4_5g14450 Fragaria vesca HOM05D002159 ORTHO05D005625 2.9e-17 92.8 65 70.8
COL.COLO4_28056 Corchorus olitorius HOM05D002159 ORTHO05D005625 2.5e-16 89.7 51 82.4
CBR_g4749 Chara braunii HOM05D002159 ORTHO05D005625 5.6e-16 88.6 137 35.8
Lj1E1000G1 Lonicera japonica HOM05D002159 ORTHO05D017878 8.9e-14 81.3 75 60.0
RcHm_v2.0_Chr1g0379331 Rosa chinensis HOM05D002159 ORTHO05D005625 1.2e-13 80.9 66 68.2
MELO3C033916.2 Cucumis melo HOM05D002159 ORTHO05D017878 4.4e-13 79.0 76 56.6
PSO423G0230 Papaver somniferum HOM05D002159 ORTHO05D005625 7.5e-13 78.2 50 72.0
MD01G1203700 Malus domestica HOM05D000507 ORTHO05D000416 9.2e-11 71.2 62 61.3
FvH4_7g30021 Fragaria vesca HOM05D002159 ORTHO05D017878 3.9e-09 65.9 63 58.7
FAN06G3485 Fragaria x ananassa HOM05D002159 ORTHO05D017878 3.9e-09 65.9 63 58.7
BcaNung01838 Brassica carinata HOM05D002159 ORTHO05D005625 6.6e-09 65.1 103 40.8
PRCOL_00000390 Prasinoderma coloniale HOM05D002159 ORTHO05D005625 3.3e-08 62.8 203 28.6
MELO3C034434.2 Cucumis melo HOM05D002159 ORTHO05D017878 2.1e-07 60.1 37 73.0
MD01G1204000 Malus domestica HOM05D000507 ORTHO05D000416 5.2e-06 55.5 38 71.1


User provided reference genes

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