Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 1.0e-128 463.4 232 100.0
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 9.4e-106 387.1 220 90.0
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 4.7e-105 384.8 220 90.5
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.4e-104 383.3 220 89.5
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.2e-103 380.2 220 87.3
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 3.0e-96 355.5 220 81.4
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 2.1e-89 332.8 223 77.1
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 8.9e-88 327.4 220 71.8
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 7.5e-87 324.3 223 75.3
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 4.9e-86 321.6 224 71.9
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 8.3e-86 320.9 224 70.5
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.8e-85 319.7 225 71.6
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 7.0e-85 317.8 220 74.5
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 9.2e-85 317.4 225 71.6
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.2e-84 317.0 225 71.6
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 1.6e-84 316.6 225 68.9
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 4.6e-84 315.1 222 73.0
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 4.6e-84 315.1 224 71.0
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 5.9e-84 314.7 226 72.1
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 7.8e-84 314.3 222 71.6
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 1.3e-83 313.5 225 70.2
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 6.6e-83 311.2 224 70.1
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 1.1e-82 310.5 225 69.8
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 4.3e-82 308.5 226 68.6
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.2e-81 307.0 225 69.8
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 1.8e-80 303.1 249 65.1
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 6.8e-80 301.2 222 69.8
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 1.5e-79 300.1 225 68.9
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 2.0e-79 299.7 226 67.7
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 4.4e-79 298.5 220 68.6
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 5.8e-79 298.1 253 62.1
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 9.8e-79 297.4 222 68.5
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 9.8e-79 297.4 222 68.5
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 2.2e-78 296.2 220 68.6
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 4.9e-78 295.0 224 67.0
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 1.1e-77 293.9 221 67.0
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 1.9e-77 293.1 226 67.7
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 1.9e-77 293.1 220 66.8
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 3.2e-77 292.4 230 66.1
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 3.2e-77 292.4 230 66.1
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.2e-77 292.4 225 67.6
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 4.1e-77 292.0 220 65.9
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 5.4e-77 291.6 225 66.7
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 1.6e-76 290.0 229 64.2
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 1.0e-75 287.3 223 67.7
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 1.7e-75 286.6 220 65.9
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 2.3e-75 286.2 221 63.8
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 3.0e-75 285.8 220 66.4
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 1.1e-74 283.9 221 66.5
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 1.1e-74 283.9 238 62.6
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 1.5e-74 283.5 229 62.4
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 1.5e-74 283.5 220 65.0
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 1.5e-74 283.5 221 65.2
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 2.5e-74 282.7 221 65.6
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 3.3e-74 282.3 222 65.8
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 3.3e-74 282.3 226 65.5
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 4.3e-74 282.0 224 67.0
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 5.6e-74 281.6 221 66.1
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 9.5e-74 280.8 220 63.2
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 1.2e-73 280.4 169 76.3
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 1.2e-73 280.4 237 61.6
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 2.1e-73 279.6 233 62.2
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 2.8e-73 279.3 220 64.5
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 2.8e-73 279.3 220 64.5
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 6.2e-73 278.1 227 63.4
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 8.1e-73 277.7 229 62.0
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 8.1e-73 277.7 220 65.0
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 1.1e-72 277.3 230 63.0
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 1.4e-72 276.9 227 63.0
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.4e-72 276.9 225 71.6
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 1.8e-72 276.6 277 55.2
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 2.3e-72 276.2 230 63.9
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 3.1e-72 275.8 223 62.8
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 5.2e-72 275.0 230 63.5
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 6.8e-72 274.6 226 61.5
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 6.8e-72 274.6 221 64.3
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 8.9e-72 274.2 229 62.4
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 1.2e-71 273.9 223 65.0
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 1.5e-71 273.5 226 61.1
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 1.5e-71 273.5 226 61.1
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 2.6e-71 272.7 220 65.5
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 3.4e-71 272.3 226 61.5
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 3.4e-71 272.3 222 63.5
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 1.7e-70 270.0 225 64.0
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 1.7e-70 270.0 229 61.1
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 2.2e-70 269.6 192 68.2
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 3.7e-70 268.9 170 74.1
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 6.4e-70 268.1 233 62.7
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.1e-69 267.3 199 65.8
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 5.4e-69 265.0 220 63.6
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 9.2e-69 264.2 220 64.1
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 1.2e-68 263.8 221 62.9
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 1.0e-67 260.8 228 59.6
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 1.0e-67 260.8 221 62.4
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 1.7e-67 260.0 231 59.3
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 1.5e-66 256.9 172 67.4
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 9.5e-66 254.2 262 53.8
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 1.2e-65 253.8 220 58.6
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 3.6e-65 252.3 221 61.1
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 4.7e-65 251.9 223 61.0
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 2.4e-64 249.6 223 63.7
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 4.0e-64 248.8 140 85.7
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 4.0e-64 248.8 219 58.9
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 1.5e-63 246.9 226 59.3
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 1.3e-62 243.8 199 61.8
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 1.4e-61 240.4 215 59.5
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.7e-59 233.4 201 61.2
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 2.3e-59 233.0 233 55.4
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 5.1e-59 231.9 225 58.7
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 5.1e-59 231.9 198 61.1
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 2.8e-57 226.1 140 81.4
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 9.9e-55 217.6 141 70.2
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 9.9e-55 217.6 204 60.8
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 1.1e-53 214.2 146 67.8
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 5.8e-47 191.8 228 46.1
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 3.0e-43 179.5 166 59.0
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 5.1e-43 178.7 199 52.3
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 1.9e-42 176.8 125 66.4
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.5e-42 176.4 109 74.3
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 4.3e-42 175.6 232 44.4
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 1.4e-40 170.6 248 41.5
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 3.1e-40 169.5 221 46.2
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 7.6e-39 164.9 210 42.9
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 2.2e-38 163.3 223 39.9
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.4e-37 160.6 128 63.3
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.3e-35 153.3 137 59.1
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 1.7e-30 137.1 154 51.3
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 7.9e-28 128.3 218 38.5
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 1.3e-27 127.5 200 42.0
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 1.5e-26 124.0 220 39.1
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 9.0e-24 114.8 65 78.5
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 1.3e-22 110.9 230 33.5
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 1.1e-21 107.8 171 40.9
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 1.5e-18 97.4 54 83.3
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 1.7e-17 94.0 55 76.4
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 1.1e-10 71.2 192 29.7
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 4.8e-09 65.9 143 32.2
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 5.3e-08 62.4 83 49.4


User provided reference genes

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