Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0365341 Rosa chinensis HOM05D003635 ORTHO05D004283 1.6e-91 339.3 168 100.0
Prupe.2G226500 Prunus persica HOM05D003635 ORTHO05D004283 4.8e-83 311.2 166 92.2
RcHm_v2.0_Chr3g0492631 Rosa chinensis HOM05D003635 ORTHO05D004283 4.8e-83 311.2 166 92.2
FAN26G2866 Fragaria x ananassa HOM05D003635 ORTHO05D004283 1.4e-82 309.7 166 91.6
FvH4_1g28630 Fragaria vesca HOM05D003635 ORTHO05D004283 1.8e-82 309.3 166 91.0
FAN23G1337 Fragaria x ananassa HOM05D003635 ORTHO05D004283 1.8e-82 309.3 166 91.0
FAN23G3063 Fragaria x ananassa HOM05D003635 ORTHO05D004283 1.8e-82 309.3 166 91.0
FAN19G1456 Fragaria x ananassa HOM05D003635 ORTHO05D004283 3.1e-82 308.5 166 91.0
FAN03G1481 Fragaria x ananassa HOM05D003635 ORTHO05D004283 5.3e-82 307.8 166 90.4
FAN10G2700 Fragaria x ananassa HOM05D003635 ORTHO05D004283 9.0e-82 307.0 166 91.0
FAN06G4735 Fragaria x ananassa HOM05D003635 ORTHO05D004283 1.2e-81 306.6 166 90.4
FAN28G1205 Fragaria x ananassa HOM05D003635 ORTHO05D004283 1.2e-81 306.6 166 91.0
FAN06G2419 Fragaria x ananassa HOM05D003635 ORTHO05D004283 2.0e-81 305.8 166 89.8
FvH4_7g20980 Fragaria vesca HOM05D003635 ORTHO05D004283 3.4e-81 305.1 166 89.8
MD01G1119800 Malus domestica HOM05D003635 ORTHO05D004283 4.5e-81 304.7 166 89.2
Potri.008G048900 Populus trichocarpa HOM05D003635 ORTHO05D004283 4.5e-81 304.7 166 88.6
Sabra08G0035000 Salix brachista HOM05D003635 ORTHO05D004283 4.5e-81 304.7 166 88.6
Cpa.g.sc1.324 Carica papaya HOM05D003635 ORTHO05D004283 5.8e-81 304.3 166 89.8
CANSAT56G1536 Cannabis sativa HOM05D003635 ORTHO05D004283 7.6e-81 303.9 166 90.4
Manes.07G109100 Manihot esculenta HOM05D003635 ORTHO05D004283 7.6e-81 303.9 166 89.8
Manes.10G036500 Manihot esculenta HOM05D003635 ORTHO05D004283 7.6e-81 303.9 166 89.8
MD07G1189000 Malus domestica HOM05D003635 ORTHO05D004283 9.9e-81 303.5 166 88.6
Gohir.A05G351700 Gossypium hirsutum HOM05D003635 ORTHO05D004283 1.7e-80 302.8 166 89.8
Gohir.D04G061100 Gossypium hirsutum HOM05D003635 ORTHO05D004283 1.7e-80 302.8 166 89.8
Gorai.012G068000 Gossypium raimondii HOM05D003635 ORTHO05D004283 1.7e-80 302.8 166 89.8
Gohir.D10G219000 Gossypium hirsutum HOM05D003635 ORTHO05D004283 2.2e-80 302.4 166 89.2
Gorai.011G245700 Gossypium raimondii HOM05D003635 ORTHO05D004283 2.2e-80 302.4 166 89.2
Potri.010G212100 Populus trichocarpa HOM05D003635 ORTHO05D004283 2.2e-80 302.4 166 88.0
Dinv25952 Davidia involucrata HOM05D003635 ORTHO05D004283 2.9e-80 302.0 166 89.2
Lj8A91T61 Lonicera japonica HOM05D003635 ORTHO05D004283 2.9e-80 302.0 166 88.6
Migut.N02978 Erythranthe guttata HOM05D003635 ORTHO05D004283 3.8e-80 301.6 166 88.6
CAN.G1557.8 Capsicum annuum HOM05D003635 ORTHO05D004283 4.9e-80 301.2 166 88.0
Hma1.2p1_3477F.1_g336300 Hydrangea macrophylla HOM05D003635 ORTHO05D004283 4.9e-80 301.2 166 88.6
Peaxi162Scf00060g00511 Petunia axillaris HOM05D003635 ORTHO05D004283 4.9e-80 301.2 166 88.0
Dinv31402 Davidia involucrata HOM05D003635 ORTHO05D004283 6.4e-80 300.8 166 88.6
Nitab4.5_0000426g0110 Nicotiana tabacum HOM05D003635 ORTHO05D004283 6.4e-80 300.8 166 87.3
Nitab4.5_0012497g0010 Nicotiana tabacum HOM05D003635 ORTHO05D004283 6.4e-80 300.8 166 87.3
Thecc.10G059000 Theobroma cacao HOM05D003635 ORTHO05D004283 6.4e-80 300.8 166 89.2
COL.COLO4_10911 Corchorus olitorius HOM05D003635 ORTHO05D004283 8.4e-80 300.4 166 88.6
ECA233G0861 Erigeron canadensis HOM05D003635 ORTHO05D004283 1.1e-79 300.1 166 86.7
Gohir.A10G210700 Gossypium hirsutum HOM05D003635 ORTHO05D004283 1.1e-79 300.1 166 88.6
SGA_v2.0_scaffold364G49990 Striga asiatica HOM05D003635 ORTHO05D004283 1.1e-79 300.1 166 88.0
SGA_v2.0_scaffold54G19634 Striga asiatica HOM05D003635 ORTHO05D004283 1.1e-79 300.1 166 88.0
ClCG02G013500 Citrullus lanatus HOM05D003635 ORTHO05D004283 1.4e-79 299.7 166 88.6
MELO3C023823.2 Cucumis melo HOM05D003635 ORTHO05D004283 1.4e-79 299.7 166 88.6
CsaV3_5G006650 Cucumis sativus L. HOM05D003635 ORTHO05D004283 1.4e-79 299.7 166 88.6
Cc00_g29200 Coffea canephora HOM05D003635 ORTHO05D004283 1.9e-79 299.3 166 88.6
DCAR_015231 Daucus carota HOM05D003635 ORTHO05D004283 1.9e-79 299.3 166 86.1
Duzib128G1000 Durio zibethinus HOM05D003635 ORTHO05D004283 1.9e-79 299.3 166 88.6
Nn2g12856 Nelumbo nucifera HOM05D003635 ORTHO05D004283 1.9e-79 299.3 166 88.0
Actinidia29205 Actinidia chinensis HOM05D003635 ORTHO05D004283 2.4e-79 298.9 166 87.3
MSTRG.22089 Avicennia marina HOM05D003635 ORTHO05D004283 2.4e-79 298.9 166 88.0
Duzib114G0516 Durio zibethinus HOM05D003635 ORTHO05D004283 2.4e-79 298.9 166 88.6
Sed0026990 Sechium edule HOM05D003635 ORTHO05D004283 2.4e-79 298.9 166 88.6
Aa31LG10G9870 Aethionema arabicum HOM05D003635 ORTHO05D004283 3.2e-79 298.5 166 86.7
Ciclev10030532m.g Citrus clementina HOM05D003635 ORTHO05D004283 3.2e-79 298.5 166 88.6
Oeu016870.1 Olea europaea HOM05D003635 ORTHO05D004283 3.2e-79 298.5 166 87.3
Rhsim09G0157900 Rhododendron simsii HOM05D003635 ORTHO05D004283 3.2e-79 298.5 166 86.7
VMungo0720G0614 Vigna mungo HOM05D003635 ORTHO05D004283 4.2e-79 298.1 166 88.6
Atru.chr12.571 Acer truncatum HOM05D003635 ORTHO05D004283 5.5e-79 297.7 166 88.6
arahy.Tifrunner.gnm1.ann1.4JT818 Arachis hypogaea HOM05D003635 ORTHO05D004283 5.5e-79 297.7 166 88.0
arahy.Tifrunner.gnm1.ann1.T81D7J Arachis hypogaea HOM05D003635 ORTHO05D004283 5.5e-79 297.7 166 88.0
CARHR289060 Cardamine hirsuta HOM05D003635 ORTHO05D004283 5.5e-79 297.7 166 86.1
Thhalv10006588m.g Eutrema salsugineum HOM05D003635 ORTHO05D004283 7.1e-79 297.4 166 86.1
Glyma.20G240500 Glycine max HOM05D003635 ORTHO05D004283 7.1e-79 297.4 166 88.0
Phvul.007G009600 Phaseolus vulgaris HOM05D003635 ORTHO05D004283 7.1e-79 297.4 166 88.6
PGR142G3382 Punica granatum HOM05D003635 ORTHO05D004283 9.3e-79 297.0 166 86.1
TAR369G0684 Trochodendron aralioides HOM05D003635 ORTHO05D004283 9.3e-79 297.0 166 86.7
AT3G55200 Arabidopsis thaliana HOM05D003635 ORTHO05D004283 1.2e-78 296.6 166 85.5
AT3G55220 Arabidopsis thaliana HOM05D003635 ORTHO05D004283 1.2e-78 296.6 166 85.5
Sp5g07240 Schrenkiella parvula HOM05D003635 ORTHO05D004283 1.2e-78 296.6 166 86.1
THA.LOC104810010 Tarenaya hassleriana HOM05D003635 ORTHO05D004283 1.2e-78 296.6 166 86.1
THA.LOC104824257 Tarenaya hassleriana HOM05D003635 ORTHO05D004283 1.2e-78 296.6 166 86.1
BcaB02g07694 Brassica carinata HOM05D003635 ORTHO05D004283 1.6e-78 296.2 166 85.5
BcaC09g48162 Brassica carinata HOM05D003635 ORTHO05D004283 1.6e-78 296.2 166 85.5
BolC1t05325H Brassica oleracea HOM05D003635 ORTHO05D004283 1.6e-78 296.2 166 85.5
BraA01t04192Z Brassica rapa HOM05D003635 ORTHO05D004283 1.6e-78 296.2 166 85.5
Lalb_Chr02g0143971 Lupinus albus HOM05D003635 ORTHO05D004283 1.6e-78 296.2 166 88.0
Lalb_Chr06g0164191 Lupinus albus HOM05D003635 ORTHO05D004283 1.6e-78 296.2 166 88.0
Solyc04g010260.3 Solanum lycopersicum HOM05D003635 ORTHO05D004283 1.6e-78 296.2 166 87.3
Sopen04g005450 Solanum pennellii HOM05D003635 ORTHO05D004283 1.6e-78 296.2 166 87.3
PGSC0003DMG400030187 Solanum tuberosum HOM05D003635 ORTHO05D004283 1.6e-78 296.2 166 87.3
Lsat_1_v5_gn_8_18261 Lactuca sativa HOM05D003635 ORTHO05D004283 2.1e-78 295.8 166 86.1
Nn2g10520 Nelumbo nucifera HOM05D003635 ORTHO05D004283 2.1e-78 295.8 166 86.7
CSS0019699 Camellia sinensis var. sinensis HOM05D003635 ORTHO05D004283 2.7e-78 295.4 166 86.7
PSO339G2718 Papaver somniferum HOM05D003635 ORTHO05D004283 2.7e-78 295.4 166 86.1
PSO384G4083 Papaver somniferum HOM05D003635 ORTHO05D004283 2.7e-78 295.4 166 86.1
DCAR_019162 Daucus carota HOM05D003635 ORTHO05D004283 3.5e-78 295.0 166 85.5
Eucgr.J01165 Eucalyptus grandis HOM05D003635 ORTHO05D004283 4.6e-78 294.7 166 86.1
Cfa001548 Carpinus fangiana HOM05D003635 ORTHO05D004283 7.9e-78 293.9 166 86.1
Haze_16985 Corylus avellana HOM05D003635 ORTHO05D004283 7.9e-78 293.9 166 86.1
CiPaw.02G179700 Carya illinoinensis HOM05D003635 ORTHO05D004283 1.0e-77 293.5 166 85.5
unitig_736.g22269 Utricularia gibba HOM05D003635 ORTHO05D004283 1.0e-77 293.5 166 84.9
AUR62022537 Chenopodium quinoa HOM05D003635 ORTHO05D004283 1.3e-77 293.1 166 86.1
AUR62035965 Chenopodium quinoa HOM05D003635 ORTHO05D004283 1.3e-77 293.1 166 86.1
HPP92_027161 Vanilla planifolia HOM05D003635 ORTHO05D004283 1.3e-77 293.1 166 84.9
Hund19994 Selenicereus undatus HOM05D003635 ORTHO05D004283 1.8e-77 292.7 166 86.1
Glyma.10G291300 Glycine max HOM05D003635 ORTHO05D004283 2.3e-77 292.4 166 86.1
Sc06g0001910 Simmondsia chinensis HOM05D003635 ORTHO05D004283 2.3e-77 292.4 166 85.5
CiPaw.01G281100 Carya illinoinensis HOM05D003635 ORTHO05D004283 3.9e-77 291.6 166 86.1
HanXRQChr08g0228691 Helianthus annuus HOM05D003635 ORTHO05D004283 5.1e-77 291.2 166 83.7
HanXRQChr14g0437201 Helianthus annuus HOM05D003635 ORTHO05D004283 5.1e-77 291.2 166 83.7
TWI63G0503 Tripterygium wilfordii HOM05D003635 ORTHO05D004283 6.7e-77 290.8 166 86.1
EL10Ac2g03470 Beta vulgaris HOM05D003635 ORTHO05D004283 1.9e-76 289.3 166 85.5
Ah.09g234270 Amaranthus hybridus HOM05D003635 ORTHO05D004283 2.5e-76 288.9 166 84.9
QL08p057820 Quercus lobata HOM05D003635 ORTHO05D004283 2.5e-76 288.9 166 84.9
Psat6g237600 Pisum sativum HOM05D003635 ORTHO05D004283 3.3e-76 288.5 165 84.8
Ca_11305_v3 Cicer arietinum L. HOM05D003635 ORTHO05D004283 5.6e-76 287.7 165 84.8
Zm00001eb231820 Zea mays HOM05D003635 ORTHO05D004283 7.4e-76 287.3 166 84.9
CDE02G2560 Ceratophyllum demersum HOM05D003635 ORTHO05D004283 1.3e-75 286.6 166 81.9
CDE09G0269 Ceratophyllum demersum HOM05D003635 ORTHO05D004283 1.3e-75 286.6 166 81.9
SalBow7G2745 Salvia bowleyana HOM05D003635 ORTHO05D004283 1.3e-75 286.6 165 84.8
Os02g0137400 Oryza sativa ssp. japonica HOM05D003635 ORTHO05D004283 1.6e-75 286.2 166 83.7
Aqoxy2G04103 Aquilegia oxysepala HOM05D003635 ORTHO05D004283 3.7e-75 285.0 166 81.9
Lj5g0001158 Lotus japonicus HOM05D003635 ORTHO05D004283 6.2e-75 284.3 168 84.5
Aqoxy1G01641 Aquilegia oxysepala HOM05D003635 ORTHO05D004283 1.1e-74 283.5 166 81.9
SEGI_11055 Sequoiadendron giganteum HOM05D003635 ORTHO05D004283 6.9e-74 280.8 166 82.5
Medtr4g115810 Medicago truncatula HOM05D003635 ORTHO05D004283 1.5e-73 279.6 165 82.4
TPR.G14006 Trifolium pratense HOM05D003635 ORTHO05D004283 1.5e-73 279.6 159 86.2
Mapoly0009s0019 Marchantia polymorpha HOM05D003635 ORTHO05D004283 1.0e-72 276.9 165 80.6
Medtr4g115500 Medicago truncatula HOM05D003635 ORTHO05D004283 1.0e-72 276.9 165 81.8
Pp3c4_5190 Physcomitrium patens HOM05D003635 ORTHO05D004283 4.9e-72 274.6 166 78.9
Pp3c12_11240 Physcomitrium patens HOM05D003635 ORTHO05D004283 6.5e-72 274.2 166 78.9
AagrBONN_evm.TU.Sc2ySwM_368.1182 Anthoceros agrestis HOM05D003635 ORTHO05D004283 1.1e-71 273.5 166 78.9
ATR0820G062 Amborella trichopoda HOM05D003635 ORTHO05D004283 1.9e-71 272.7 165 80.0
Pp3c16_16800 Physcomitrium patens HOM05D003635 ORTHO05D004283 4.2e-71 271.6 166 78.3
AUR62002616 Chenopodium quinoa HOM05D003635 ORTHO05D004283 3.9e-69 265.0 166 76.5
SMO116G0157 Selaginella moellendorffii HOM05D003635 ORTHO05D004283 8.2e-67 257.3 166 75.9
Medtr6g013290 Medicago truncatula HOM05D003635 ORTHO05D004283 1.4e-66 256.5 165 78.8
CBR_g32401 Chara braunii HOM05D003635 ORTHO05D004283 4.6e-62 241.5 169 72.2
AUR62023868 Chenopodium quinoa HOM05D003635 ORTHO05D004283 3.0e-61 238.8 166 71.1
Medtr1g115525 Medicago truncatula HOM05D003635 ORTHO05D004283 5.7e-60 234.6 165 73.3
Carub.0005s2188 Capsella rubella HOM05D003635 ORTHO05D004283 2.9e-56 222.2 127 82.7
GSVIVG01005970001 Vitis vinifera HOM05D003635 ORTHO05D004283 1.9e-55 219.5 167 70.1
HanXRQChr08g0234761 Helianthus annuus HOM05D003635 ORTHO05D004283 3.2e-55 218.8 174 66.1
Sabra10G0164300 Salix brachista HOM05D003635 ORTHO05D004283 5.9e-49 198.0 113 84.1
MCO14G333 Micromonas commoda HOM05D003635 ORTHO05D004283 1.9e-47 193.0 166 57.2
Actinidia13851 Actinidia chinensis HOM05D003635 ORTHO05D004283 2.7e-38 162.5 96 82.3
Zm00001eb163410 Zea mays HOM05D003635 ORTHO05D004283 1.0e-37 160.6 88 85.2
Zm00001eb163420 Zea mays HOM05D003635 ORTHO05D004283 1.0e-37 160.6 88 85.2
Zm00001eb163430 Zea mays HOM05D003635 ORTHO05D004283 1.0e-37 160.6 88 85.2
Cre08.g372800 Chlamydomonas reinhardtii HOM05D003635 ORTHO05D004283 1.4e-37 160.2 167 49.7
PRCOL_00000086 Prasinoderma coloniale HOM05D003635 ORTHO05D004283 8.8e-37 157.5 165 45.5
HPP92_016709 Vanilla planifolia HOM05D003635 ORTHO05D004283 2.2e-35 152.9 81 86.4
Haze_26580 Corylus avellana HOM05D003635 ORTHO05D004283 3.7e-35 152.1 167 45.5
AUR62002316 Chenopodium quinoa HOM05D003635 ORTHO05D004283 3.1e-34 149.1 108 70.4
AL5G36324 Arabidopsis lyrata HOM05D003635 ORTHO05D004283 5.5e-31 138.3 79 84.8
AagrBONN_evm.TU.Sc2ySwM_362.2622 Anthoceros agrestis HOM05D003635 ORTHO05D004283 7.5e-28 127.9 82 74.4
SEGI_11921 Sequoiadendron giganteum HOM05D003635 ORTHO05D004283 2.5e-23 112.8 89 66.3
Actinidia02986 Actinidia chinensis HOM05D003635 ORTHO05D004283 4.2e-23 112.1 110 55.5
FAN10G2922 Fragaria x ananassa HOM05D003635 ORTHO05D004283 8.0e-22 107.8 59 93.2
HPP92_016710 Vanilla planifolia HOM05D003635 ORTHO05D004283 4.1e-18 95.5 59 79.7
BraA09t36394Z Brassica rapa HOM05D003635 ORTHO05D021615 9.5e-15 84.3 54 79.6
Rhsim09G0158100 Rhododendron simsii HOM05D003635 ORTHO05D004283 1.6e-14 83.6 59 72.9
BcaC04g23439 Brassica carinata HOM05D011657 ORTHO05D021615 3.4e-12 75.9 55 74.5
C09p08310 Brassica napus HOM05D003635 ORTHO05D021615 3.4e-12 75.9 55 74.5
BolC9t53741H Brassica oleracea HOM05D003635 ORTHO05D021615 3.4e-12 75.9 55 74.5
SMO119G0053 Selaginella moellendorffii HOM05D003609 ORTHO05D004185 1.1e-10 70.9 153 31.4
Pp3c15_18160 Physcomitrium patens HOM05D003609 ORTHO05D004185 1.8e-10 70.1 151 32.5
ATR0594G240 Amborella trichopoda HOM05D003609 ORTHO05D004185 3.2e-10 69.3 151 32.5
Oeu015191.1 Olea europaea HOM05D003609 ORTHO05D004185 2.0e-09 66.6 129 33.3
CBR_g19725 Chara braunii HOM05D003609 ORTHO05D004185 3.5e-09 65.9 121 32.2
TAR626G0448 Trochodendron aralioides HOM05D003609 ORTHO05D004185 5.9e-09 65.1 153 30.7
Pp3c9_22270 Physcomitrium patens HOM05D003609 ORTHO05D004185 1.3e-08 63.9 110 34.5
TAR624G1151 Trochodendron aralioides HOM05D003609 ORTHO05D004185 3.0e-08 62.8 151 30.5
Lj6g0025210 Lotus japonicus HOM05D003609 ORTHO05D004185 8.6e-08 61.2 89 37.1
Nitab4.5_0005101g0010 Nicotiana tabacum HOM05D003609 ORTHO05D004185 1.9e-07 60.1 169 29.6
SalBow8G0777 Salvia bowleyana HOM05D003609 ORTHO05D004185 3.3e-07 59.3 110 35.5
Cre10.g432000 Chlamydomonas reinhardtii HOM05D003609 ORTHO05D004185 1.6e-06 57.0 105 31.4
CARHR227680 Cardamine hirsuta HOM05D003609 ORTHO05D004185 2.1e-06 56.6 108 33.3
CDE02G3832 Ceratophyllum demersum HOM05D003609 ORTHO05D004185 4.7e-06 55.5 150 27.3


User provided reference genes

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