Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0342681 Rosa chinensis HOM05D002606 ORTHO05D003016 5.7e-56 220.7 113 100.0
RcHm_v2.0_Chr4g0385031 Rosa chinensis HOM05D002606 ORTHO05D003016 6.6e-28 127.5 64 95.3
RcHm_v2.0_Chr7g0178771 Rosa chinensis HOM05D002606 ORTHO05D003016 7.3e-27 124.0 60 96.7
FvH4_5g17080 Fragaria vesca HOM05D002606 ORTHO05D003016 1.4e-25 119.8 60 90.0
FAN04G2084 Fragaria x ananassa HOM05D002606 ORTHO05D003016 4.0e-25 118.2 60 88.3
FAN08G0509 Fragaria x ananassa HOM05D002606 ORTHO05D003016 5.7e-24 114.4 60 86.7
Cpa.g.sc3.434 Carica papaya HOM05D002606 ORTHO05D003016 5.0e-20 101.3 66 68.2
Prupe.5G230300 Prunus persica HOM05D002606 ORTHO05D003016 1.1e-19 100.1 60 71.7
MD14G1234100 Malus domestica HOM05D002606 ORTHO05D003016 1.5e-19 99.8 59 74.6
CANSAT80G0481 Cannabis sativa HOM05D002606 ORTHO05D003016 1.9e-19 99.4 60 70.0
Rhsim12G0139800 Rhododendron simsii HOM05D002606 ORTHO05D003016 3.3e-19 98.6 68 58.8
Potri.015G041400 Populus trichocarpa HOM05D002606 ORTHO05D003016 3.6e-18 95.1 73 60.3
Actinidia35112 Actinidia chinensis HOM05D002606 ORTHO05D003016 8.0e-18 94.0 60 65.0
QL10p027611 Quercus lobata HOM05D002606 ORTHO05D003016 1.8e-17 92.8 60 66.7
Ciclev10007863m.g Citrus clementina HOM05D002606 ORTHO05D003016 2.3e-17 92.4 60 63.3
Lj5C154T18 Lonicera japonica HOM05D002606 ORTHO05D003016 2.3e-17 92.4 60 66.7
GSVIVG01008397001 Vitis vinifera HOM05D002606 ORTHO05D003016 2.3e-17 92.4 60 65.0
Atru.chr9.958 Acer truncatum HOM05D002606 ORTHO05D003016 3.1e-17 92.0 60 66.7
arahy.Tifrunner.gnm1.ann1.CMXS5I Arachis hypogaea HOM05D002606 ORTHO05D003016 3.1e-17 92.0 60 65.0
arahy.Tifrunner.gnm1.ann1.NX7DWE Arachis hypogaea HOM05D002606 ORTHO05D003016 3.1e-17 92.0 60 65.0
Cfa019693 Carpinus fangiana HOM05D002606 ORTHO05D003016 4.0e-17 91.7 60 65.0
Lj2g0015801 Lotus japonicus HOM05D002606 ORTHO05D003016 4.0e-17 91.7 60 63.3
Phvul.004G151700 Phaseolus vulgaris HOM05D002606 ORTHO05D003016 4.0e-17 91.7 60 63.3
Sabra15G0055700 Salix brachista HOM05D002606 ORTHO05D003016 4.0e-17 91.7 60 65.0
Sabra15G0063300 Salix brachista HOM05D002606 ORTHO05D003016 4.0e-17 91.7 60 65.0
Lalb_Chr24g0398041 Lupinus albus HOM05D002606 ORTHO05D003016 5.2e-17 91.3 69 53.6
vmacro16425 Vaccinium macrocarpon HOM05D002606 ORTHO05D003016 5.2e-17 91.3 63 58.7
CiPaw.16G091200 Carya illinoinensis HOM05D002606 ORTHO05D003016 6.8e-17 90.9 60 61.7
Manes.14G169100 Manihot esculenta HOM05D002606 ORTHO05D003016 8.9e-17 90.5 60 65.0
TWI81G0397 Tripterygium wilfordii HOM05D002606 ORTHO05D003016 1.2e-16 90.1 60 63.3
Dinv24630 Davidia involucrata HOM05D002606 ORTHO05D003016 1.5e-16 89.7 60 61.7
TAR629G1583 Trochodendron aralioides HOM05D002606 ORTHO05D003016 1.5e-16 89.7 60 63.3
Haze_18795 Corylus avellana HOM05D002606 ORTHO05D003016 2.0e-16 89.4 60 63.3
VMungo0464G0918 Vigna mungo HOM05D002606 ORTHO05D003016 2.0e-16 89.4 60 61.7
Duzib205G1612 Durio zibethinus HOM05D002606 ORTHO05D003016 2.6e-16 89.0 60 63.3
CSS0022111 Camellia sinensis var. sinensis HOM05D002606 ORTHO05D003016 3.4e-16 88.6 60 60.0
Nn3g18593 Nelumbo nucifera HOM05D002606 ORTHO05D003016 3.4e-16 88.6 60 63.3
Peaxi162Scf00683g00215 Petunia axillaris HOM05D002606 ORTHO05D003016 3.4e-16 88.6 62 59.7
PGSC0003DMG400005737 Solanum tuberosum HOM05D002606 ORTHO05D003016 3.4e-16 88.6 59 66.1
PGR083G1787 Punica granatum HOM05D002606 ORTHO05D003016 4.4e-16 88.2 60 60.0
DCAR_014772 Daucus carota HOM05D002606 ORTHO05D003016 5.8e-16 87.8 60 60.0
Glyma.07G100600 Glycine max HOM05D002606 ORTHO05D003016 5.8e-16 87.8 60 60.0
Solyc03g119070.2 Solanum lycopersicum HOM05D002606 ORTHO05D003016 7.5e-16 87.4 60 63.3
Psat1g032440 Pisum sativum HOM05D002606 ORTHO05D003016 9.8e-16 87.0 60 60.0
Sopen03g037960 Solanum pennellii HOM05D002606 ORTHO05D003016 1.3e-15 86.7 60 61.7
Eucgr.B00858 Eucalyptus grandis HOM05D002606 ORTHO05D003016 1.7e-15 86.3 60 61.7
CAN.G1129.26 Capsicum annuum HOM05D002606 ORTHO05D003016 2.2e-15 85.9 60 61.7
Medtr0110s0050 Medicago truncatula HOM05D002606 ORTHO05D003016 2.2e-15 85.9 60 58.3
Cc04_g06600 Coffea canephora HOM05D002606 ORTHO05D003016 4.9e-15 84.7 60 60.0
ClCG04G010770 Citrullus lanatus HOM05D002606 ORTHO05D003016 6.4e-15 84.3 67 53.7
AUR62029960 Chenopodium quinoa HOM05D002606 ORTHO05D003016 8.3e-15 84.0 60 58.3
TPR.G1475 Trifolium pratense HOM05D002606 ORTHO05D003016 8.3e-15 84.0 60 58.3
Aqoxy3G04014 Aquilegia oxysepala HOM05D002606 ORTHO05D003016 1.1e-14 83.6 60 56.7
Hund02332 Selenicereus undatus HOM05D002606 ORTHO05D003016 1.1e-14 83.6 60 60.0
Thecc.03G047600 Theobroma cacao HOM05D002606 ORTHO05D003016 1.1e-14 83.6 60 58.3
Nitab4.5_0001644g0030 Nicotiana tabacum HOM05D002606 ORTHO05D003016 2.4e-14 82.4 60 55.0
Sed0024498 Sechium edule HOM05D002606 ORTHO05D003016 2.4e-14 82.4 60 58.3
Oeu005547.1 Olea europaea HOM05D002606 ORTHO05D003016 3.2e-14 82.0 59 55.9
Gohir.A09G051500 Gossypium hirsutum HOM05D002606 ORTHO05D003016 4.1e-14 81.6 60 55.0
Gohir.D09G052500 Gossypium hirsutum HOM05D002606 ORTHO05D003016 4.1e-14 81.6 60 55.0
Gorai.006G057100 Gossypium raimondii HOM05D002606 ORTHO05D003016 4.1e-14 81.6 60 55.0
Nitab4.5_0001158g0110 Nicotiana tabacum HOM05D002606 ORTHO05D003016 4.1e-14 81.6 60 56.7
Nitab4.5_0001644g0080 Nicotiana tabacum HOM05D002606 ORTHO05D003016 4.1e-14 81.6 60 55.0
Sc10g0009290 Simmondsia chinensis HOM05D002606 ORTHO05D003016 4.1e-14 81.6 60 58.3
COL.COLO4_22314 Corchorus olitorius HOM05D002606 ORTHO05D003016 5.4e-14 81.3 60 55.0
HanXRQChr03g0087021 Helianthus annuus HOM05D002606 ORTHO05D003016 4.6e-13 78.2 60 58.3
EL10Ac5g11524 Beta vulgaris HOM05D002606 ORTHO05D003016 6.0e-13 77.8 60 60.0
Aa31LG7G2980 Aethionema arabicum HOM05D002606 ORTHO05D003016 1.0e-12 77.0 60 55.0
MELO3C002121.2 Cucumis melo HOM05D002606 ORTHO05D003016 1.7e-12 76.3 59 55.9
THA.LOC104813917 Tarenaya hassleriana HOM05D002606 ORTHO05D003016 1.1e-11 73.6 60 51.7
CsaV3_1G007030 Cucumis sativus L. HOM05D002606 ORTHO05D003016 2.5e-11 72.4 59 54.2
ECA233G1730 Erigeron canadensis HOM05D002606 ORTHO05D003016 5.6e-11 71.2 60 51.7
Migut.I00455 Erythranthe guttata HOM05D002606 ORTHO05D003016 7.3e-11 70.9 60 48.3
AL1G30470 Arabidopsis lyrata HOM05D002606 ORTHO05D003016 2.8e-10 68.9 59 49.2
CARHR018680 Cardamine hirsuta HOM05D002606 ORTHO05D003016 4.7e-10 68.2 60 51.7
Thhalv10007197m.g Eutrema salsugineum HOM05D002606 ORTHO05D003016 6.2e-10 67.8 59 50.8
AT1G18090 Arabidopsis thaliana HOM05D002606 ORTHO05D003016 1.2e-08 63.5 70 45.7
Carub.0001s1776 Capsella rubella HOM05D002606 ORTHO05D003016 1.2e-08 63.5 60 45.0
A08p30550 Brassica napus HOM05D002606 ORTHO05D003016 2.6e-08 62.4 60 48.3
Sp1g16110 Schrenkiella parvula HOM05D002606 ORTHO05D003016 2.6e-08 62.4 60 46.7
C08p18420 Brassica napus HOM05D002606 ORTHO05D003016 3.4e-08 62.0 60 46.7
BraA08t34987Z Brassica rapa HOM05D002606 ORTHO05D003016 4.4e-08 61.6 60 46.7
Mapoly0058s0059 Marchantia polymorpha HOM05D002606 ORTHO05D003016 7.5e-08 60.8 59 40.7
BolC8t49472H Brassica oleracea HOM05D002606 ORTHO05D003016 1.7e-07 59.7 60 45.0
BcaC07g38906 Brassica carinata HOM05D002606 ORTHO05D003016 6.4e-07 57.8 56 44.6


User provided reference genes

Program Settings