Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0323991 Rosa chinensis HOM05D006635 ORTHO05D008047 2.8e-143 511.9 259 100.0
FvH4_2g07190 Fragaria vesca HOM05D006635 ORTHO05D008047 4.0e-129 464.9 260 90.0
FAN24G3344 Fragaria x ananassa HOM05D006635 ORTHO05D008047 5.2e-129 464.5 260 90.0
FAN20G2319 Fragaria x ananassa HOM05D006635 ORTHO05D008047 2.2e-127 459.1 260 88.1
FAN27G3431 Fragaria x ananassa HOM05D006635 ORTHO05D008047 7.5e-120 434.1 286 79.4
Prupe.1G031500 Prunus persica HOM05D006635 ORTHO05D008047 9.5e-115 417.2 248 82.7
MD13G1208000 Malus domestica HOM05D006635 ORTHO05D008047 4.4e-112 408.3 259 79.9
Haze_11307 Corylus avellana HOM05D006635 ORTHO05D008047 1.9e-99 366.3 249 73.5
CiPaw.01G189900 Carya illinoinensis HOM05D006635 ORTHO05D008047 7.3e-99 364.4 248 75.8
Haze_11310 Corylus avellana HOM05D006635 ORTHO05D008047 9.5e-99 364.0 249 73.1
GSVIVG01018125001 Vitis vinifera HOM05D006635 ORTHO05D008047 5.2e-97 358.2 255 71.8
CANSAT78G1035 Cannabis sativa HOM05D006635 ORTHO05D008047 1.2e-96 357.1 250 74.0
Eucgr.H03153 Eucalyptus grandis HOM05D006635 ORTHO05D008047 3.4e-96 355.5 261 70.1
Manes.15G037200 Manihot esculenta HOM05D006635 ORTHO05D008047 1.3e-95 353.6 263 68.4
Ciclev10005689m.g Citrus clementina HOM05D006635 ORTHO05D008047 2.2e-95 352.8 254 70.5
Ciclev10005690m.g Citrus clementina HOM05D006635 ORTHO05D008047 2.2e-95 352.8 253 71.9
Cfa008372 Carpinus fangiana HOM05D003636 ORTHO05D005160 8.4e-95 350.9 239 72.8
Thecc.04G246700 Theobroma cacao HOM05D006635 ORTHO05D008047 2.4e-94 349.4 258 69.0
Gohir.D10G153800 Gossypium hirsutum HOM05D006635 ORTHO05D008047 3.2e-94 349.0 253 69.2
Gorai.011G171700 Gossypium raimondii HOM05D006635 ORTHO05D008047 3.2e-94 349.0 253 69.2
Atru.chr4.2211 Acer truncatum HOM05D006635 ORTHO05D008047 2.7e-93 345.9 254 67.3
Gohir.A10G113600 Gossypium hirsutum HOM05D006635 ORTHO05D008047 6.0e-93 344.7 253 68.8
Hma1.2p1_0650F.1_g195460 Hydrangea macrophylla HOM05D006635 ORTHO05D008047 6.0e-93 344.7 244 70.9
CSS0008878 Camellia sinensis var. sinensis HOM05D006635 ORTHO05D008047 1.0e-92 344.0 255 67.8
Ciclev10007171m.g Citrus clementina HOM05D006635 ORTHO05D008047 6.6e-92 341.3 238 73.1
Dinv29905 Davidia involucrata HOM05D006635 ORTHO05D008047 2.8e-90 335.9 260 66.5
Solyc06g053770.4 Solanum lycopersicum HOM05D006635 ORTHO05D008047 4.7e-90 335.1 248 68.5
Sc19g0003750 Simmondsia chinensis HOM05D006635 ORTHO05D008047 8.1e-90 334.3 259 64.9
TWI53G1330 Tripterygium wilfordii HOM05D006635 ORTHO05D008047 1.1e-89 334.0 256 67.2
TWI53G1448 Tripterygium wilfordii HOM05D006635 ORTHO05D008047 1.1e-89 334.0 256 67.2
Sc19g0005210 Simmondsia chinensis HOM05D006635 ORTHO05D008047 2.4e-89 332.8 259 64.5
Sopen06g018890 Solanum pennellii HOM05D006635 ORTHO05D008047 3.1e-89 332.4 252 67.5
DCAR_027282 Daucus carota HOM05D006635 ORTHO05D008047 2.0e-88 329.7 247 68.8
Cc03_g04920 Coffea canephora HOM05D006635 ORTHO05D008047 4.4e-88 328.6 264 66.3
Potri.010G075900 Populus trichocarpa HOM05D006635 ORTHO05D008047 7.6e-88 327.8 258 67.1
COL.COLO4_15799 Corchorus olitorius HOM05D006635 ORTHO05D008047 1.3e-87 327.0 238 68.9
Nitab4.5_0000302g0050 Nicotiana tabacum HOM05D006635 ORTHO05D008047 4.9e-87 325.1 263 67.7
PGSC0003DMG400016282 Solanum tuberosum HOM05D006635 ORTHO05D008047 6.4e-87 324.7 253 66.4
PSO210G4915 Papaver somniferum HOM05D006635 ORTHO05D008047 1.1e-86 323.9 254 63.8
Lj6A657T45 Lonicera japonica HOM05D006635 ORTHO05D008047 1.9e-86 323.2 253 65.6
PSO832G2723 Papaver somniferum HOM05D006635 ORTHO05D008047 1.9e-86 323.2 254 63.4
Actinidia08441 Actinidia chinensis HOM05D006635 ORTHO05D008047 1.2e-85 320.5 254 66.5
Aqoxy5G00314 Aquilegia oxysepala HOM05D006635 ORTHO05D008047 3.5e-85 318.9 254 63.8
Lj5g0017333 Lotus japonicus HOM05D006635 ORTHO05D008047 3.5e-85 318.9 250 65.2
QL06p015844 Quercus lobata HOM05D006635 ORTHO05D008047 6.0e-85 318.2 341 53.4
arahy.Tifrunner.gnm1.ann1.20YP49 Arachis hypogaea HOM05D006635 ORTHO05D008047 7.8e-85 317.8 251 63.7
arahy.Tifrunner.gnm1.ann1.P8HXAC Arachis hypogaea HOM05D006635 ORTHO05D008047 1.0e-84 317.4 251 63.3
THA.LOC104808600 Tarenaya hassleriana HOM05D006635 ORTHO05D008047 1.7e-84 316.6 253 64.4
Cpa.g.sc58.53 Carica papaya HOM05D006635 ORTHO05D008047 2.3e-84 316.2 224 70.5
CAN.G118.6 Capsicum annuum HOM05D006635 ORTHO05D008047 3.9e-84 315.5 257 65.0
Sed0017322 Sechium edule HOM05D006635 ORTHO05D008047 4.3e-83 312.0 226 69.0
PGR004G0241 Punica granatum HOM05D006635 ORTHO05D008047 7.3e-83 311.2 253 63.6
Lalb_Chr02g0150381 Lupinus albus HOM05D006635 ORTHO05D008047 9.6e-83 310.8 260 61.9
AUR62002251 Chenopodium quinoa HOM05D006635 ORTHO05D008047 1.6e-82 310.1 237 67.1
Migut.G00439 Erythranthe guttata HOM05D006635 ORTHO05D008047 1.6e-82 310.1 255 62.7
Ca_09839_v3 Cicer arietinum L. HOM05D006635 ORTHO05D008047 1.4e-81 307.0 248 63.3
Oeu058885.1 Olea europaea HOM05D006635 ORTHO05D008047 1.8e-81 306.6 271 60.1
Nn1g02620 Nelumbo nucifera HOM05D006635 ORTHO05D008047 5.3e-81 305.1 282 58.5
Medtr1g075330 Medicago truncatula HOM05D006635 ORTHO05D008047 2.0e-80 303.1 251 63.3
HanXRQChr13g0424511 Helianthus annuus HOM05D006635 ORTHO05D008047 2.6e-80 302.8 250 63.6
Carub.0003s2327 Capsella rubella HOM05D006635 ORTHO05D008047 7.6e-80 301.2 247 63.2
ClCG09G015590 Citrullus lanatus HOM05D006635 ORTHO05D008047 9.9e-80 300.8 241 65.1
Nitab4.5_0008721g0010 Nicotiana tabacum HOM05D006635 ORTHO05D008047 1.3e-79 300.4 254 63.0
CDE04G0173 Ceratophyllum demersum HOM05D006635 ORTHO05D008047 1.7e-79 300.1 254 61.0
ECA240G1129 Erigeron canadensis HOM05D000856 ORTHO05D002253 1.7e-79 300.1 254 60.6
Duzib151G0047 Durio zibethinus HOM05D006635 ORTHO05D008047 2.2e-79 299.7 249 63.5
Sp3g20780 Schrenkiella parvula HOM05D006635 ORTHO05D008047 2.9e-79 299.3 250 62.4
MELO3C018624.2 Cucumis melo HOM05D006635 ORTHO05D008047 4.9e-79 298.5 232 66.4
CsaV3_7G006710 Cucumis sativus L. HOM05D006635 ORTHO05D008047 6.4e-79 298.1 226 66.4
vmacro15410 Vaccinium macrocarpon HOM05D006635 ORTHO05D008047 1.1e-78 297.4 302 56.0
MSTRG.4101 Avicennia marina HOM05D006635 ORTHO05D008047 2.4e-78 296.2 253 59.7
AL3G37550 Arabidopsis lyrata HOM05D006635 ORTHO05D008047 3.2e-78 295.8 251 60.2
Psat4g107880 Pisum sativum HOM05D006635 ORTHO05D008047 4.2e-78 295.4 253 60.9
CARHR099010 Cardamine hirsuta HOM05D006635 ORTHO05D008047 7.1e-78 294.7 255 59.6
Ah.13g066120 Amaranthus hybridus HOM05D006635 ORTHO05D008047 2.7e-77 292.7 224 65.6
BcaC09g49245 Brassica carinata HOM05D006635 ORTHO05D008047 3.9e-76 288.9 250 61.2
Glyma.10G184800 Glycine max HOM05D006635 ORTHO05D008047 3.9e-76 288.9 253 58.5
Hund11856 Selenicereus undatus HOM05D006635 ORTHO05D008047 1.5e-75 287.0 253 60.1
AT3G23100 Arabidopsis thaliana HOM05D006635 ORTHO05D008047 2.5e-75 286.2 247 59.1
Glyma.20G205600 Glycine max HOM05D006635 ORTHO05D008047 3.7e-74 282.3 253 57.3
HPP92_023529 Vanilla planifolia HOM05D006635 ORTHO05D008047 6.2e-74 281.6 265 57.4
EL10Ac3g05891 Beta vulgaris HOM05D006635 ORTHO05D008047 1.1e-73 280.8 263 59.7
Phvul.007G125600 Phaseolus vulgaris HOM05D006635 ORTHO05D008047 1.8e-73 280.0 253 58.1
CSS0031458 Camellia sinensis var. sinensis HOM05D006635 ORTHO05D008047 2.0e-72 276.6 281 54.8
BcaB04g20471 Brassica carinata HOM05D006635 ORTHO05D008047 1.3e-71 273.9 248 57.7
Peaxi162Scf00325g00713 Petunia axillaris HOM05D006635 ORTHO05D008047 3.8e-71 272.3 266 58.3
Os03g0740800 Oryza sativa ssp. japonica HOM05D006635 ORTHO05D008047 9.3e-70 267.7 273 53.5
ATR0824G049 Amborella trichopoda HOM05D006635 ORTHO05D008047 2.1e-69 266.5 225 58.7
Zm00001eb056730 Zea mays HOM05D006635 ORTHO05D008047 1.8e-68 263.5 260 55.0
VMungo0720G1578 Vigna mungo HOM05D006635 ORTHO05D008047 2.3e-68 263.1 253 55.7
A01p31980 Brassica napus HOM05D006635 ORTHO05D008047 5.6e-67 258.5 249 55.4
BraA01t03324Z Brassica rapa HOM05D006635 ORTHO05D008047 5.6e-67 258.5 249 55.4
Thhalv10022194m.g Eutrema salsugineum HOM05D006635 ORTHO05D008047 6.2e-66 255.0 247 55.9
Aa31LG8G9580 Aethionema arabicum HOM05D006635 ORTHO05D008047 1.1e-65 254.2 278 51.4
BolC1t04048H Brassica oleracea HOM05D006635 ORTHO05D008047 1.2e-64 250.8 172 66.3
Sabra10G0032800 Salix brachista HOM05D006635 ORTHO05D008047 2.6e-64 249.6 451 39.0
MBI19_g38372_MAGBIO Magnolia biondii HOM05D006635 ORTHO05D008047 6.0e-61 238.4 257 54.9
Lsat_1_v5_gn_3_122920 Lactuca sativa HOM05D006635 ORTHO05D008047 8.7e-60 234.6 214 58.4
PGR102G1543 Punica granatum HOM05D006635 ORTHO05D008047 2.5e-51 206.5 259 47.9
PGR004G0922 Punica granatum HOM05D006635 ORTHO05D008047 1.2e-48 197.6 156 61.5
C01p40990 Brassica napus HOM05D006635 ORTHO05D008047 4.5e-48 195.7 131 64.9
Mapoly0014s0074 Marchantia polymorpha HOM05D006635 ORTHO05D008047 6.3e-42 175.3 208 42.8
AUR62015462 Chenopodium quinoa HOM05D006635 ORTHO05D008047 1.7e-39 167.2 150 60.0
PGR083G1020 Punica granatum HOM05D006635 ORTHO05D008047 1.7e-39 167.2 259 42.1
TAR636G0517 Trochodendron aralioides HOM05D006635 ORTHO05D008047 1.8e-33 147.1 126 68.3
AagrBONN_evm.TU.Sc2ySwM_228.5661 Anthoceros agrestis HOM05D006635 ORTHO05D008047 1.0e-31 141.4 234 37.6
TPR.G27195 Trifolium pratense HOM05D006635 ORTHO05D008047 2.1e-29 133.7 89 66.3
TAR636G2119 Trochodendron aralioides HOM05D006635 ORTHO05D008047 5.2e-28 129.0 94 62.8
Ciclev10029925m.g Citrus clementina HOM05D006635 ORTHO05D008047 1.7e-26 124.0 132 49.2
Pp3c1_38430 Physcomitrium patens HOM05D006635 ORTHO05D008047 2.3e-20 103.6 236 30.9
AT1G61410 Arabidopsis thaliana HOM05D006635 ORTHO05D008047 1.2e-19 101.3 127 53.5
Oeu058884.1 Olea europaea HOM05D001680 ORTHO05D001596 2.0e-19 100.5 119 52.1
Pp3c14_21160 Physcomitrium patens HOM05D006635 ORTHO05D008047 1.4e-17 94.4 262 29.0
SEGI_11171 Sequoiadendron giganteum HOM05D006635 ORTHO05D008047 1.8e-17 94.0 133 39.1
CBR_g33918 Chara braunii HOM05D006635 ORTHO05D008047 2.4e-17 93.6 178 36.5
SEGI_02340 Sequoiadendron giganteum HOM05D006635 ORTHO05D008047 7.0e-17 92.0 131 49.6
MBI19_g44428_MAGBIO Magnolia biondii HOM05D006635 ORTHO05D008047 2.0e-16 90.5 131 43.5
C01p40960 Brassica napus HOM05D006635 ORTHO05D008047 1.1e-14 84.7 95 53.7
Thhalv10021924m.g Eutrema salsugineum HOM05D006635 ORTHO05D008047 1.9e-14 84.0 83 57.8
C01p40970 Brassica napus HOM05D006635 ORTHO05D008047 2.8e-10 70.1 49 55.1
Pp3c10_9830 Physcomitrium patens HOM05D000160 ORTHO05D000496 2.8e-10 70.1 141 31.2
Pp3c13_7410 Physcomitrium patens HOM05D000160 ORTHO05D000496 3.5e-08 63.2 167 27.5
Pp3c3_5070 Physcomitrium patens HOM05D000160 ORTHO05D000496 1.7e-07 60.8 166 27.1
unitig_747.g21677 Utricularia gibba HOM05D006635 ORTHO05D008047 6.6e-07 58.9 49 49.0
FvH4_6g04370 Fragaria vesca HOM05D045458 ORTHO05D045905 4.3e-06 56.2 42 59.5
FAN11G2595 Fragaria x ananassa HOM05D045458 ORTHO05D045905 9.5e-06 55.1 38 63.2


User provided reference genes

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