Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0320381 Rosa chinensis HOM05D003704 ORTHO05D028681 3.3e-39 164.5 77 100.0
RcHm_v2.0_Chr1g0320881 Rosa chinensis HOM05D003704 ORTHO05D028681 8.5e-11 70.1 35 88.6
RcHm_v2.0_Chr1g0319731 Rosa chinensis HOM05D003704 ORTHO05D005892 3.2e-10 68.2 31 96.8
FAN01G0955 Fragaria x ananassa HOM05D003704 ORTHO05D005892 1.6e-09 65.9 31 93.5
FAN03G0678 Fragaria x ananassa HOM05D003704 ORTHO05D005892 1.6e-09 65.9 31 93.5
FAN10G3548 Fragaria x ananassa HOM05D003704 ORTHO05D005892 1.6e-09 65.9 31 93.5
FvH4_7g02390 Fragaria vesca HOM05D003704 ORTHO05D005892 1.0e-08 63.2 31 90.3
FAN06G0794 Fragaria x ananassa HOM05D003704 ORTHO05D005892 1.0e-08 63.2 31 90.3
MBI05_g32455_MAGBIO Magnolia biondii HOM05D003704 ORTHO05D005892 2.3e-08 62.0 30 86.7
Prupe.2G030100 Prunus persica HOM05D003704 ORTHO05D005892 3.9e-08 61.2 31 87.1
AUR62026830 Chenopodium quinoa HOM05D003704 ORTHO05D005892 5.1e-08 60.8 30 90.0
Lj2g0008107 Lotus japonicus HOM05D003704 ORTHO05D005892 6.7e-08 60.5 30 86.7
Sc11g0006670 Simmondsia chinensis HOM05D003704 ORTHO05D005892 6.7e-08 60.5 30 86.7
Zm00001eb018810 Zea mays HOM05D003704 ORTHO05D005892 6.7e-08 60.5 30 86.7
Phvul.003G001700 Phaseolus vulgaris HOM05D003704 ORTHO05D005892 8.8e-08 60.1 30 86.7
MD02G1293500 Malus domestica HOM05D003704 ORTHO05D005892 1.1e-07 59.7 31 83.9
MD07G1033300 Malus domestica HOM05D003704 ORTHO05D005892 1.1e-07 59.7 31 83.9
EL10Ac2g02849 Beta vulgaris HOM05D003704 ORTHO05D005892 1.5e-07 59.3 30 86.7
CiPaw.13G011100 Carya illinoinensis HOM05D003704 ORTHO05D005892 1.5e-07 59.3 30 86.7
AUR62037223 Chenopodium quinoa HOM05D003704 ORTHO05D005892 1.5e-07 59.3 30 86.7
Ca_12375_v3 Cicer arietinum L. HOM05D003704 ORTHO05D005892 1.5e-07 59.3 30 86.7
ClCG05G020780 Citrullus lanatus HOM05D003704 ORTHO05D005892 1.5e-07 59.3 30 86.7
MELO3C012449.2 Cucumis melo HOM05D003704 ORTHO05D005892 1.5e-07 59.3 30 86.7
CsaV3_5G036520 Cucumis sativus L. HOM05D003704 ORTHO05D005892 1.5e-07 59.3 30 86.7
Sed0025295 Sechium edule HOM05D003704 ORTHO05D005892 1.5e-07 59.3 30 86.7
VMungo0251G0473 Vigna mungo HOM05D003704 ORTHO05D005892 1.5e-07 59.3 30 86.7
PGR142G1874 Punica granatum HOM05D003704 ORTHO05D005892 2.0e-07 58.9 30 83.3
QL04p013824 Quercus lobata HOM05D003704 ORTHO05D005892 2.0e-07 58.9 30 86.7
Hund15714 Selenicereus undatus HOM05D003704 ORTHO05D005892 2.0e-07 58.9 30 86.7
Haze_03082 Corylus avellana HOM05D003704 ORTHO05D005892 3.3e-07 58.2 34 76.5
CANSAT64G2305 Cannabis sativa HOM05D003704 ORTHO05D005892 4.4e-07 57.8 30 83.3
Eucgr.G03254 Eucalyptus grandis HOM05D003704 ORTHO05D005892 4.4e-07 57.8 30 83.3
Glyma.20G000700 Glycine max HOM05D003704 ORTHO05D005892 4.4e-07 57.8 30 83.3
Medtr1g038815 Medicago truncatula HOM05D003704 ORTHO05D005892 4.4e-07 57.8 30 83.3
Peaxi162Scf00309g00333 Petunia axillaris HOM05D003704 ORTHO05D005892 4.4e-07 57.8 33 75.8
TPR.G35533 Trifolium pratense HOM05D003704 ORTHO05D005892 4.4e-07 57.8 30 83.3
TWI15G0657 Tripterygium wilfordii HOM05D003704 ORTHO05D005892 4.4e-07 57.8 30 80.0
Ciclev10030496m.g Citrus clementina HOM05D003704 ORTHO05D005892 5.7e-07 57.4 30 80.0
Nn5g29073 Nelumbo nucifera HOM05D003704 ORTHO05D005892 5.7e-07 57.4 30 80.0
Psat4g010680 Pisum sativum HOM05D003704 ORTHO05D005892 5.7e-07 57.4 30 83.3
Atru.chr11.2463 Acer truncatum HOM05D003704 ORTHO05D005892 7.4e-07 57.0 30 76.7
Atru.chr11.2491 Acer truncatum HOM05D003704 ORTHO05D005892 7.4e-07 57.0 30 76.7
CDE06G2138 Ceratophyllum demersum HOM05D003704 ORTHO05D028681 9.7e-07 56.6 34 76.5
COL.COLO4_37421 Corchorus olitorius HOM05D003704 ORTHO05D005892 9.7e-07 56.6 30 80.0
Glyma.09G285300 Glycine max HOM05D003704 ORTHO05D005892 9.7e-07 56.6 30 83.3
Lalb_Chr17g0337761 Lupinus albus HOM05D003704 ORTHO05D005892 9.7e-07 56.6 30 83.3
Solyc01g068480.4 Solanum lycopersicum HOM05D003704 ORTHO05D005892 9.7e-07 56.6 30 80.0
Sopen01g030440 Solanum pennellii HOM05D003704 ORTHO05D005892 9.7e-07 56.6 30 80.0
Actinidia21525 Actinidia chinensis HOM05D003704 ORTHO05D005892 1.3e-06 56.2 30 80.0
CSS0035088 Camellia sinensis var. sinensis HOM05D003704 ORTHO05D005892 1.3e-06 56.2 30 80.0
Nitab4.5_0000316g0110 Nicotiana tabacum HOM05D003704 ORTHO05D005892 1.3e-06 56.2 30 76.7
Nitab4.5_0001888g0060 Nicotiana tabacum HOM05D003704 ORTHO05D005892 1.3e-06 56.2 30 76.7
Thecc.05G198600 Theobroma cacao HOM05D003704 ORTHO05D005892 1.3e-06 56.2 30 80.0
Ah.12g065080 Amaranthus hybridus HOM05D003704 ORTHO05D005892 1.7e-06 55.8 30 80.0
Aqoxy1G04161 Aquilegia oxysepala HOM05D003704 ORTHO05D005892 1.7e-06 55.8 30 80.0
Aqoxy263s005 Aquilegia oxysepala HOM05D003704 ORTHO05D005892 1.7e-06 55.8 30 80.0
BcaC02g07445 Brassica carinata HOM05D003704 ORTHO05D005892 2.2e-06 55.5 30 80.0
BolC4t28191H Brassica oleracea HOM05D003704 ORTHO05D005892 2.2e-06 55.5 30 80.0
Lalb_Chr10g0094791 Lupinus albus HOM05D003704 ORTHO05D028681 2.2e-06 55.5 41 63.4
Oeu003918.1 Olea europaea HOM05D003704 ORTHO05D005892 2.2e-06 55.5 30 80.0
BcaB02g09152 Brassica carinata HOM05D003704 ORTHO05D005892 2.8e-06 55.1 30 76.7
BcaNung07214 Brassica carinata HOM05D003704 ORTHO05D005892 2.8e-06 55.1 30 76.7
C04p08870 Brassica napus HOM05D003704 ORTHO05D005892 2.8e-06 55.1 30 76.7
BolC4t22475H Brassica oleracea HOM05D003704 ORTHO05D005892 2.8e-06 55.1 30 76.7
BraA04t18425Z Brassica rapa HOM05D003704 ORTHO05D005892 2.8e-06 55.1 30 76.7
BraA05t19706Z Brassica rapa HOM05D003704 ORTHO05D005892 2.8e-06 55.1 30 76.7
CARHR133480 Cardamine hirsuta HOM05D003704 ORTHO05D005892 2.8e-06 55.1 31 74.2
Cfa010865 Carpinus fangiana HOM05D003704 ORTHO05D005892 2.8e-06 55.1 30 80.0
Migut.N01826 Erythranthe guttata HOM05D003704 ORTHO05D005892 2.8e-06 55.1 30 76.7
Migut.O00529 Erythranthe guttata HOM05D003704 ORTHO05D005892 2.8e-06 55.1 30 76.7
Thhalv10016138m.g Eutrema salsugineum HOM05D003704 ORTHO05D005892 2.8e-06 55.1 30 76.7
Lj2A1006G35 Lonicera japonica HOM05D003704 ORTHO05D005892 2.8e-06 55.1 30 76.7
Sp4g21160 Schrenkiella parvula HOM05D003704 ORTHO05D005892 2.8e-06 55.1 30 76.7
THA.LOC104801743 Tarenaya hassleriana HOM05D003704 ORTHO05D005892 2.8e-06 55.1 30 80.0
GSVIVG01000835001 Vitis vinifera HOM05D003704 ORTHO05D005892 2.8e-06 55.1 30 76.7
MSTRG.28042 Avicennia marina HOM05D003704 ORTHO05D005892 3.7e-06 54.7 30 80.0
Duzib128G1318 Durio zibethinus HOM05D003704 ORTHO05D005892 3.7e-06 54.7 30 80.0
GSVIVG01029933001 Vitis vinifera HOM05D003704 ORTHO05D005892 3.7e-06 54.7 30 73.3
Aa31LG5G20910 Aethionema arabicum HOM05D003704 ORTHO05D005892 4.8e-06 54.3 30 76.7
AL4G36070 Arabidopsis lyrata HOM05D003704 ORTHO05D005892 4.8e-06 54.3 30 76.7
AT2G38770 Arabidopsis thaliana HOM05D003704 ORTHO05D005892 4.8e-06 54.3 30 76.7
arahy.Tifrunner.gnm1.ann1.75MG08 Arachis hypogaea HOM05D003704 ORTHO05D005892 4.8e-06 54.3 30 76.7
arahy.Tifrunner.gnm1.ann1.RZB3JM Arachis hypogaea HOM05D003704 ORTHO05D005892 4.8e-06 54.3 30 76.7
Carub.0004s2079 Capsella rubella HOM05D003704 ORTHO05D005892 4.8e-06 54.3 30 76.7
CAN.G1571.5 Capsicum annuum HOM05D003704 ORTHO05D005892 4.8e-06 54.3 30 73.3
ECA234G1951 Erigeron canadensis HOM05D003704 ORTHO05D005892 4.8e-06 54.3 30 76.7
Gohir.D08G245550 Gossypium hirsutum HOM05D003704 ORTHO05D005892 4.8e-06 54.3 30 80.0
Gorai.004G262000 Gossypium raimondii HOM05D003704 ORTHO05D005892 4.8e-06 54.3 30 80.0
Manes.04G164800 Manihot esculenta HOM05D003704 ORTHO05D005892 4.8e-06 54.3 30 76.7
CDE02G2053 Ceratophyllum demersum HOM05D003704 ORTHO05D005892 6.3e-06 53.9 30 80.0
Dinv32045 Davidia involucrata HOM05D003704 ORTHO05D005892 6.3e-06 53.9 30 73.3
PSO541G6018 Papaver somniferum HOM05D003704 ORTHO05D005892 6.3e-06 53.9 30 73.3
PSO781G0253 Papaver somniferum HOM05D003704 ORTHO05D005892 6.3e-06 53.9 30 73.3
C04p66890 Brassica napus HOM05D003704 ORTHO05D005892 8.2e-06 53.5 30 73.3
PSO781G0329 Papaver somniferum HOM05D003704 ORTHO05D005892 8.2e-06 53.5 30 80.0
Rhsim01G0123500 Rhododendron simsii HOM05D003704 ORTHO05D005892 8.2e-06 53.5 30 73.3
vmacro12686 Vaccinium macrocarpon HOM05D003704 ORTHO05D005892 8.2e-06 53.5 30 73.3


User provided reference genes

Program Settings