Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 0.0e+00 1323.9 670 100.0
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 0.0e+00 1193.3 674 90.7
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 0.0e+00 1192.6 674 90.5
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 0.0e+00 1191.0 695 88.2
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 0.0e+00 1162.5 726 83.3
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 8.3e-280 966.8 672 74.6
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 3.4e-265 918.3 673 71.9
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 1.2e-254 883.2 678 67.8
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 1.9e-252 875.9 673 67.6
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 4.3e-244 848.2 677 66.0
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 5.8e-241 837.8 678 65.8
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 1.1e-239 833.6 706 63.6
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 2.5e-239 832.4 676 65.1
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 3.0e-237 825.5 674 63.9
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 1.8e-234 816.2 678 64.2
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 3.4e-233 812.0 677 62.5
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 1.3e-232 810.1 672 63.4
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 1.9e-231 806.2 671 63.3
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 2.7e-230 802.4 672 62.8
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 4.6e-230 801.6 673 63.3
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 1.8e-229 799.7 669 62.9
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 1.1e-228 797.0 715 59.6
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 1.9e-228 796.2 671 62.9
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 7.4e-228 794.3 669 63.2
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 1.3e-227 793.5 671 62.6
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 4.8e-227 791.6 669 62.9
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 4.8e-227 791.6 677 61.2
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 2.2e-224 782.7 670 63.1
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 3.8e-224 781.9 669 61.7
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 8.5e-224 780.8 695 60.4
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 6.1e-222 774.6 673 62.1
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 3.3e-220 768.8 669 61.0
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 1.7e-219 766.5 683 59.0
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 8.2e-219 764.2 695 60.0
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 3.1e-218 762.3 669 59.8
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 6.9e-218 761.1 674 61.3
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 9.4e-215 750.7 674 59.8
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 1.9e-207 726.5 678 57.2
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 1.2e-206 723.8 694 57.1
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 2.7e-206 722.6 674 57.9
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 3.6e-206 722.2 673 58.2
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 1.1e-204 717.2 840 51.3
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 5.7e-204 714.9 597 63.1
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 1.3e-203 713.8 643 59.7
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 1.7e-203 713.4 691 57.2
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 2.4e-202 709.5 664 58.1
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 6.5e-200 701.4 575 67.1
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 8.5e-200 701.0 664 56.9
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 1.9e-199 699.9 614 60.9
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 7.2e-199 698.0 701 55.9
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 2.7e-198 696.0 741 52.9
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 4.7e-198 695.3 674 56.5
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 4.0e-197 692.2 653 57.1
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 4.0e-197 692.2 673 55.9
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 5.2e-197 691.8 677 56.4
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 8.8e-197 691.0 672 56.2
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 4.4e-196 688.7 675 58.5
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 1.3e-195 687.2 684 55.4
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 1.4e-194 683.7 674 56.5
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 7.0e-194 681.4 683 56.4
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 1.0e-192 677.6 666 56.2
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 3.8e-192 675.6 666 55.9
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 2.5e-191 672.9 672 56.2
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 2.1e-190 669.8 666 55.3
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 2.1e-190 669.8 666 55.3
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 2.1e-190 669.8 666 55.3
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 4.0e-189 665.6 590 62.7
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 1.2e-188 664.1 673 55.3
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 3.7e-187 659.1 670 55.7
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 4.9e-187 658.7 667 54.7
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.4e-178 630.6 663 52.0
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 7.8e-177 624.8 605 56.9
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 3.9e-176 622.5 585 58.1
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 1.9e-175 620.2 669 52.2
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 3.6e-174 615.9 659 51.4
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 3.4e-172 609.4 666 50.9
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 3.5e-169 599.4 660 52.4
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 6.0e-169 598.6 667 50.1
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 8.6e-168 594.7 526 61.8
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 2.3e-165 586.6 596 56.2
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 8.9e-165 584.7 667 50.2
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 8.9e-165 584.7 593 55.8
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 7.1e-162 575.1 575 56.7
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 3.5e-161 572.8 666 50.3
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 1.3e-160 570.9 664 49.8
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 2.0e-156 557.0 660 48.2
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 2.0e-156 557.0 667 48.4
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.6e-153 547.4 662 47.6
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 3.0e-152 543.1 501 58.1
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 1.6e-150 537.3 647 48.8
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 4.7e-150 535.8 676 45.6
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 1.9e-146 523.9 499 56.5
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 6.2e-134 482.3 271 90.4
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.1e-130 471.5 526 51.3
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 8.7e-120 435.3 461 54.2
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 1.1e-119 434.9 650 44.8
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 1.9e-119 434.1 682 39.9
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 1.9e-114 417.5 675 37.8
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 2.1e-113 414.1 680 39.1
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 2.3e-112 410.6 670 37.8
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 1.7e-107 394.4 767 36.0
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 2.7e-105 387.1 563 41.9
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.7e-94 351.3 432 49.1
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 4.1e-93 346.7 468 43.6
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 1.7e-91 341.3 556 41.2
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 2.1e-89 334.3 222 75.7
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 6.7e-88 329.3 226 72.6
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 3.1e-85 320.5 519 39.5
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 1.8e-80 304.7 911 28.9
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 7.0e-77 292.7 379 46.2
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 1.7e-75 288.1 281 54.4
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 4.0e-72 276.9 151 93.4
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 9.8e-63 245.7 312 49.4
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 2.2e-62 244.6 167 72.5
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 5.0e-59 233.4 160 75.0
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.2e-57 228.8 174 68.4
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 3.6e-57 227.3 167 68.3
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 6.0e-52 209.9 135 78.5
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.1e-50 205.7 144 72.2
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 8.1e-49 199.5 164 63.4
RcHm_v2.0_Chr2g0114761 Rosa chinensis HOM05D004944 ORTHO05D005989 2.6e-47 194.5 107 92.5
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 3.4e-47 194.1 175 61.7
RcHm_v2.0_Chr5g0078731 Rosa chinensis HOM05D004944 ORTHO05D005989 4.4e-47 193.7 108 91.7
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 1.3e-46 192.2 370 37.6
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.3e-46 192.2 171 57.9
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 1.4e-45 188.7 101 93.1
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 2.1e-41 174.9 137 63.5
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 1.2e-39 169.1 177 52.0
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 3.2e-37 161.0 141 57.4
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 4.6e-36 157.1 119 64.7
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 1.9e-34 151.8 163 51.5
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 5.6e-34 150.2 144 55.6
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 3.6e-33 147.5 282 38.3
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.8e-32 145.2 103 70.9
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 4.2e-29 134.0 296 32.8
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 3.0e-27 127.9 320 30.3
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 3.3e-26 124.4 151 49.7
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 9.0e-24 116.3 142 45.8
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 5.8e-23 113.6 92 65.2
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 7.6e-23 113.2 252 31.3
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 4.6e-20 104.0 174 37.9
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 3.0e-19 101.3 55 83.6
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 2.1e-17 95.1 55 76.4
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 4.0e-16 90.9 53 81.1
Lalb_Chr04g0263911 Lupinus albus HOM05D004944 ORTHO05D005989 1.1e-13 82.8 62 64.5
SHI03965 Sapria himalayana HOM05D004944 ORTHO05D005989 1.2e-12 79.3 86 52.3
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 1.0e-11 76.3 151 34.4


User provided reference genes

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