Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0316481 Rosa chinensis HOM05D003957 ORTHO05D037444 4.3e-68 261.2 127 100.0
RcHm_v2.0_Chr1g0316511 Rosa chinensis HOM05D003957 ORTHO05D004833 6.4e-40 167.5 82 95.1
FAN03G1487 Fragaria x ananassa HOM05D003957 ORTHO05D004833 7.9e-38 160.6 82 91.5
FAN03G2622 Fragaria x ananassa HOM05D003957 ORTHO05D004833 2.3e-37 159.1 82 90.2
FAN10G3195 Fragaria x ananassa HOM05D003957 ORTHO05D004833 2.3e-37 159.1 82 90.2
FvH4_7g01180 Fragaria vesca HOM05D003957 ORTHO05D004833 3.3e-36 155.2 82 89.0
FAN06G1255 Fragaria x ananassa HOM05D003957 ORTHO05D004833 1.6e-35 152.9 82 87.8
MD07G1012900 Malus domestica HOM05D003957 ORTHO05D004833 1.4e-31 139.8 82 74.4
Prupe.2G015300 Prunus persica HOM05D003957 ORTHO05D004833 2.4e-31 139.0 82 75.6
Eucgr.J01212 Eucalyptus grandis HOM05D003957 ORTHO05D004833 6.7e-29 131.0 82 72.0
MD02G1308500 Malus domestica HOM05D003957 ORTHO05D004833 6.7e-29 131.0 82 69.5
Cfa010778 Carpinus fangiana HOM05D003957 ORTHO05D004833 4.3e-28 128.3 84 69.0
Thecc.01G409500 Theobroma cacao HOM05D003957 ORTHO05D004833 2.1e-27 125.9 82 69.5
Gohir.D08G164700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 1.4e-26 123.2 83 68.7
CiPaw.13G005800 Carya illinoinensis HOM05D003957 ORTHO05D004833 2.4e-26 122.5 84 67.9
Gorai.004G171700 Gossypium raimondii HOM05D003957 ORTHO05D004833 2.4e-26 122.5 83 67.5
CsaV3_3G032090 Cucumis sativus L. HOM05D003957 ORTHO05D004833 5.3e-26 121.3 81 66.7
MELO3C023982.2 Cucumis melo HOM05D003957 ORTHO05D004833 1.2e-25 120.2 81 66.7
COL.COLO4_04863 Corchorus olitorius HOM05D003957 ORTHO05D004833 1.5e-25 119.8 82 63.4
Gohir.A08G143700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 1.5e-25 119.8 83 67.5
Actinidia20662 Actinidia chinensis HOM05D003957 ORTHO05D004833 2.0e-25 119.4 84 65.5
Dinv09346 Davidia involucrata HOM05D003957 ORTHO05D004833 2.6e-25 119.0 82 65.9
Manes.10G140900 Manihot esculenta HOM05D003957 ORTHO05D004833 3.4e-25 118.6 84 59.5
Duzib138G0145 Durio zibethinus HOM05D003957 ORTHO05D004833 5.8e-25 117.9 78 69.2
Cpa.g.sc125.12 Carica papaya HOM05D003957 ORTHO05D004833 1.0e-24 117.1 102 54.9
PGR044G1355 Punica granatum HOM05D003957 ORTHO05D004833 2.9e-24 115.5 82 64.6
Ca_19580_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 8.4e-24 114.0 81 61.7
Cc07_g18910 Coffea canephora HOM05D003957 ORTHO05D004833 1.1e-23 113.6 84 58.3
Lj3g0013934 Lotus japonicus HOM05D003957 ORTHO05D004833 1.4e-23 113.2 79 64.6
Sc11g0009110 Simmondsia chinensis HOM05D003957 ORTHO05D004833 1.4e-23 113.2 84 60.7
VMungo1127G1153 Vigna mungo HOM05D003957 ORTHO05D004833 1.9e-23 112.8 80 62.5
GSVIVG01032128001 Vitis vinifera HOM05D003957 ORTHO05D004833 2.5e-23 112.5 80 65.0
CiPaw.14G000800 Carya illinoinensis HOM05D003957 ORTHO05D004833 3.2e-23 112.1 81 60.5
ClCG10G012310 Citrullus lanatus HOM05D003957 ORTHO05D004833 3.2e-23 112.1 81 61.7
Nitab4.5_0008353g0020 Nicotiana tabacum HOM05D003957 ORTHO05D004833 3.2e-23 112.1 84 61.9
arahy.Tifrunner.gnm1.ann1.X54W53 Arachis hypogaea HOM05D003957 ORTHO05D004833 4.2e-23 111.7 81 61.7
Sed0014830 Sechium edule HOM05D003957 ORTHO05D004833 5.5e-23 111.3 81 60.5
arahy.Tifrunner.gnm1.ann1.MG259H Arachis hypogaea HOM05D003957 ORTHO05D004833 7.1e-23 110.9 81 61.7
TWI73G1181 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 7.1e-23 110.9 81 63.0
Glyma.08G090300 Glycine max HOM05D003957 ORTHO05D004833 9.3e-23 110.5 78 65.4
Oeu014587.1 Olea europaea HOM05D003957 ORTHO05D004833 1.2e-22 110.2 84 61.9
Phvul.005G024600 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 1.2e-22 110.2 79 62.0
Lalb_Chr25g0282971 Lupinus albus HOM05D003957 ORTHO05D004833 1.6e-22 109.8 81 61.7
Phvul.011G009800 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 1.6e-22 109.8 79 62.0
VMungo1080G1779 Vigna mungo HOM05D003957 ORTHO05D004833 1.6e-22 109.8 81 59.3
Hund21483 Selenicereus undatus HOM05D003957 ORTHO05D004833 2.1e-22 109.4 84 57.1
Atru.chr11.2608 Acer truncatum HOM05D003957 ORTHO05D004833 2.7e-22 109.0 84 57.1
MSTRG.20577 Avicennia marina HOM05D003957 ORTHO05D004833 3.5e-22 108.6 84 57.1
Ciclev10031578m.g Citrus clementina HOM05D003957 ORTHO05D004833 3.5e-22 108.6 84 57.1
CSS0035789 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 6.0e-22 107.8 80 62.5
TWI09G1258 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 6.0e-22 107.8 80 61.2
CANSAT80G0271 Cannabis sativa HOM05D003957 ORTHO05D004833 7.9e-22 107.5 88 58.0
Lalb_Chr01g0000361 Lupinus albus HOM05D003957 ORTHO05D004833 1.0e-21 107.1 79 62.0
Medtr4g037515 Medicago truncatula HOM05D003957 ORTHO05D004833 1.0e-21 107.1 79 62.0
Peaxi162Scf00953g00417 Petunia axillaris HOM05D003957 ORTHO05D004833 1.0e-21 107.1 84 59.5
Sabra09G0044100 Salix brachista HOM05D003957 ORTHO05D004833 1.0e-21 107.1 83 60.2
Sabra16G0162800 Salix brachista HOM05D003957 ORTHO05D004833 1.3e-21 106.7 113 48.7
Sed0012226 Sechium edule HOM05D003957 ORTHO05D004833 1.3e-21 106.7 81 59.3
Potri.001G264900 Populus trichocarpa HOM05D003957 ORTHO05D004833 1.8e-21 106.3 83 61.4
Nitab4.5_0002918g0090 Nicotiana tabacum HOM05D003531 ORTHO05D004833 2.3e-21 105.9 80 60.0
Rhsim01G0129100 Rhododendron simsii HOM05D003957 ORTHO05D004833 2.3e-21 105.9 80 60.0
Glyma.10G089600 Glycine max HOM05D003957 ORTHO05D004833 3.0e-21 105.5 81 58.0
AUR62009393 Chenopodium quinoa HOM05D003957 ORTHO05D004833 3.9e-21 105.1 84 56.0
TPR.G3690 Trifolium pratense HOM05D003957 ORTHO05D004833 3.9e-21 105.1 79 62.0
Potri.009G059900 Populus trichocarpa HOM05D003957 ORTHO05D004833 8.7e-21 104.0 83 61.4
CSS0043854 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 1.1e-20 103.6 84 57.1
Nn2g15304 Nelumbo nucifera HOM05D003957 ORTHO05D004833 1.1e-20 103.6 83 57.8
TAR623G1381 Trochodendron aralioides HOM05D003957 ORTHO05D004833 1.1e-20 103.6 81 60.5
Psat7g196440 Pisum sativum HOM05D003957 ORTHO05D004833 1.5e-20 103.2 81 56.8
Solyc01g087290.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 1.5e-20 103.2 84 59.5
Sopen01g034330 Solanum pennellii HOM05D003957 ORTHO05D004833 1.5e-20 103.2 84 59.5
THA.LOC104817580 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 1.5e-20 103.2 79 58.2
CAN.G219.36 Capsicum annuum HOM05D003957 ORTHO05D004833 1.9e-20 102.8 84 59.5
vmacro21188 Vaccinium macrocarpon HOM05D003957 ORTHO05D004833 2.5e-20 102.4 77 61.0
EL10Ac2g04341 Beta vulgaris HOM05D003531 ORTHO05D004354 3.3e-20 102.1 84 52.4
Lj3g0028128 Lotus japonicus HOM05D003957 ORTHO05D004833 3.3e-20 102.1 80 57.5
MBI02_g05667_MAGBIO Magnolia biondii HOM05D003957 ORTHO05D004833 4.3e-20 101.7 81 56.8
Psat5g208720 Pisum sativum HOM05D003957 ORTHO05D004833 4.3e-20 101.7 83 54.2
AUR62023075 Chenopodium quinoa HOM05D003957 ORTHO05D004833 7.4e-20 100.9 84 54.8
AUR62043481 Chenopodium quinoa HOM05D003957 ORTHO05D004833 7.4e-20 100.9 84 54.8
PGSC0003DMG400006795 Solanum tuberosum HOM05D003957 ORTHO05D004833 7.4e-20 100.9 84 58.3
THA.LOC104809852 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 9.7e-20 100.5 81 56.8
Medtr3g030890 Medicago truncatula HOM05D003957 ORTHO05D004833 1.3e-19 100.1 80 55.0
TPR.G35301 Trifolium pratense HOM05D003957 ORTHO05D004833 1.3e-19 100.1 80 55.0
Thhalv10023495m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 6.3e-19 97.8 82 53.7
Sp5g26390 Schrenkiella parvula HOM05D003957 ORTHO05D004833 6.3e-19 97.8 80 55.0
SGA_v2.0_scaffold119G32740 Striga asiatica HOM05D003957 ORTHO05D004833 6.3e-19 97.8 85 54.1
A07p37580 Brassica napus HOM05D003957 ORTHO05D004833 1.4e-18 96.7 79 57.0
Aa31LG10G17380 Aethionema arabicum HOM05D003957 ORTHO05D004833 1.8e-18 96.3 81 54.3
AT3G63510 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 1.8e-18 96.3 80 55.0
DCAR_029679 Daucus carota HOM05D003957 ORTHO05D004833 1.8e-18 96.3 80 57.5
unitig_749.g14329 Utricularia gibba HOM05D003957 ORTHO05D004833 1.8e-18 96.3 85 56.5
Thhalv10004383m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 2.4e-18 95.9 88 47.7
BraA07t31319Z Brassica rapa HOM05D003957 ORTHO05D004833 3.1e-18 95.5 80 55.0
PSO339G1767 Papaver somniferum HOM05D003957 ORTHO05D004833 3.1e-18 95.5 80 60.0
AL5G46370 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 6.9e-18 94.4 77 55.8
BcaB03g14880 Brassica carinata HOM05D003957 ORTHO05D004833 6.9e-18 94.4 80 52.5
SalBow5G1725 Salvia bowleyana HOM05D003957 ORTHO05D004833 6.9e-18 94.4 84 53.6
SalBow5G3453 Salvia bowleyana HOM05D003957 ORTHO05D004833 6.9e-18 94.4 84 53.6
C06p45340 Brassica napus HOM05D003957 ORTHO05D004833 9.0e-18 94.0 79 54.4
Aqoxy1G00278 Aquilegia oxysepala HOM05D003957 ORTHO05D004833 1.2e-17 93.6 85 49.4
Solyc01g087300.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 1.5e-17 93.2 112 44.6
Migut.B01290 Erythranthe guttata HOM05D003957 ORTHO05D004833 2.0e-17 92.8 87 56.3
Sopen01g034340 Solanum pennellii HOM05D003957 ORTHO05D004833 2.0e-17 92.8 112 44.6
ATR0332G004 Amborella trichopoda HOM05D003957 ORTHO05D004833 4.5e-17 91.7 78 55.1
Aa31LG11G7410 Aethionema arabicum HOM05D003957 ORTHO05D004833 5.9e-17 91.3 81 49.4
unitig_749.g13713 Utricularia gibba HOM05D003957 ORTHO05D004833 7.6e-17 90.9 87 52.9
Aa31LG5G18360 Aethionema arabicum HOM05D003957 ORTHO05D004833 1.0e-16 90.5 82 52.4
Oeu006567.1 Olea europaea HOM05D003957 ORTHO05D004833 1.0e-16 90.5 78 57.7
PSO384G3990 Papaver somniferum HOM05D003957 ORTHO05D004833 1.3e-16 90.1 79 54.4
BcaC08g46558 Brassica carinata HOM05D003957 ORTHO05D004833 1.7e-16 89.7 80 51.2
BolC6t39590H Brassica oleracea HOM05D003957 ORTHO05D004833 1.7e-16 89.7 80 51.2
Carub.0005s3012 Capsella rubella HOM05D003957 ORTHO05D004833 1.7e-16 89.7 80 52.5
C07p38840 Brassica napus HOM05D003957 ORTHO05D004833 2.2e-16 89.4 75 52.0
Ah.00g001360 Amaranthus hybridus HOM05D003957 ORTHO05D004833 5.0e-16 88.2 78 48.7
Sp2g18450 Schrenkiella parvula HOM05D003957 ORTHO05D004833 6.5e-16 87.8 75 52.0
HPP92_013483 Vanilla planifolia HOM05D003957 ORTHO05D004833 6.5e-16 87.8 78 50.0
HPP92_026038 Vanilla planifolia HOM05D003957 ORTHO05D004833 6.5e-16 87.8 78 50.0
BolC7t44403H Brassica oleracea HOM05D003957 ORTHO05D004833 8.5e-16 87.4 106 41.5
Carub.0008s0751 Capsella rubella HOM05D003957 ORTHO05D004833 8.5e-16 87.4 75 49.3
arahy.Tifrunner.gnm1.ann1.74EFZ5 Arachis hypogaea HOM05D003957 ORTHO05D004833 1.1e-15 87.0 80 48.8
arahy.Tifrunner.gnm1.ann1.N7MVRX Arachis hypogaea HOM05D003957 ORTHO05D004833 1.1e-15 87.0 80 48.8
BcaC06g30833 Brassica carinata HOM05D003957 ORTHO05D004833 1.1e-15 87.0 118 39.0
A06p39430 Brassica napus HOM05D003957 ORTHO05D004833 1.1e-15 87.0 106 41.5
BraA06t26858Z Brassica rapa HOM05D003957 ORTHO05D004833 1.1e-15 87.0 106 41.5
Os04g0278900 Oryza sativa ssp. japonica HOM05D003957 ORTHO05D004833 1.4e-15 86.7 76 52.6
AT5G47970 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 1.9e-15 86.3 75 48.0
CARHR184310 Cardamine hirsuta HOM05D003957 ORTHO05D004833 1.9e-15 86.3 80 46.2
AL8G20240 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 2.5e-15 85.9 74 50.0
DCAR_003217 Daucus carota HOM05D003957 ORTHO05D004833 2.5e-15 85.9 81 53.1
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.6e-14 83.2 66 57.6
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.6e-14 83.2 66 57.6
ECA248G0218 Erigeron canadensis HOM05D003957 ORTHO05D004833 2.7e-14 82.4 88 52.3
HanXRQChr01g0016501 Helianthus annuus HOM05D003957 ORTHO05D004833 3.0e-13 79.0 88 48.9
CAN.G219.37 Capsicum annuum HOM05D003957 ORTHO05D004833 3.9e-13 78.6 69 53.6
QL04p008294 Quercus lobata HOM05D003957 ORTHO05D037444 3.7e-11 72.0 54 63.0
Thecc.09G345400 Theobroma cacao HOM05D003957 ORTHO05D037444 9.1e-10 67.4 53 56.6
SEGI_24417 Sequoiadendron giganteum HOM05D003957 ORTHO05D004833 9.4e-07 57.4 84 36.9
Lsat_1_v5_gn_1_106241 Lactuca sativa HOM05D003957 ORTHO05D004833 2.7e-06 55.8 89 40.4


User provided reference genes

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