Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr0c11g0499371 Rosa chinensis HOM05D004863 ORTHO05D005802 5.8e-283 976.9 487 100.0
RcHm_v2.0_Chr7g0236141 Rosa chinensis HOM05D004863 ORTHO05D005802 5.3e-268 927.2 467 99.4
FvH4_5g35270 Fragaria vesca HOM05D004863 ORTHO05D005802 3.2e-212 741.9 467 81.6
FAN13G2483 Fragaria x ananassa HOM05D004863 ORTHO05D005802 3.5e-211 738.4 466 81.1
FAN18G0869 Fragaria x ananassa HOM05D004863 ORTHO05D005802 4.3e-209 731.5 489 77.9
FAN04G1688 Fragaria x ananassa HOM05D004863 ORTHO05D005802 9.5e-209 730.3 475 79.8
FAN08G0290 Fragaria x ananassa HOM05D004863 ORTHO05D005802 1.9e-196 689.5 475 76.0
RcHm_v2.0_Chr7g0236461 Rosa chinensis HOM05D004863 ORTHO05D005802 6.9e-175 617.8 318 98.4
RcHm_v2.0_Chr7g0236501 Rosa chinensis HOM05D004863 ORTHO05D005802 6.9e-175 617.8 318 98.4
RcHm_v2.0_Chr5g0049691 Rosa chinensis HOM05D004863 ORTHO05D005802 2.2e-128 463.4 264 89.4
RcHm_v2.0_Chr7g0230601 Rosa chinensis HOM05D004863 ORTHO05D005802 2.5e-124 449.9 249 91.2
Cfa001286 Carpinus fangiana HOM05D004863 ORTHO05D005802 4.0e-106 389.4 484 51.0
QL08p063631 Quercus lobata HOM05D004863 ORTHO05D005802 1.2e-105 387.9 480 50.6
CiPaw.01G301000 Carya illinoinensis HOM05D004863 ORTHO05D005802 1.3e-101 374.4 476 49.8
Dinv21763 Davidia involucrata HOM05D004863 ORTHO05D005802 1.7e-101 374.0 521 48.2
RcHm_v2.0_Chr0c11g0499581 Rosa chinensis HOM05D004863 ORTHO05D005802 1.7e-101 374.0 188 100.0
TWI09G1305 Tripterygium wilfordii HOM05D004863 ORTHO05D005802 6.6e-101 372.1 487 49.7
Migut.F00644 Erythranthe guttata HOM05D004863 ORTHO05D005802 9.5e-100 368.2 504 48.0
Potri.008G072300 Populus trichocarpa HOM05D004863 ORTHO05D005802 2.3e-98 363.6 484 47.7
Ciclev10031002m.g Citrus clementina HOM05D004863 ORTHO05D005802 1.3e-96 357.8 490 47.3
CANSAT56G0816 Cannabis sativa HOM05D004863 ORTHO05D005802 1.7e-96 357.5 485 48.0
Haze_17264 Corylus avellana HOM05D000087 ORTHO05D000793 1.2e-94 351.3 458 50.4
Manes.10G009400 Manihot esculenta HOM05D004863 ORTHO05D005802 3.5e-94 349.7 483 47.0
Prupe.2G254800 Prunus persica HOM05D004863 ORTHO05D005802 1.7e-93 347.4 489 47.6
CANSAT32G0002 Cannabis sativa HOM05D004863 ORTHO05D005802 3.9e-93 346.3 483 47.0
Actinidia00665 Actinidia chinensis HOM05D004863 ORTHO05D005802 7.3e-92 342.0 462 48.7
Hma1.2p1_3100F.1_g332690 Hydrangea macrophylla HOM05D004863 ORTHO05D005802 1.2e-91 341.3 489 48.3
SalBow3G1147 Salvia bowleyana HOM05D004863 ORTHO05D005802 4.7e-91 339.3 507 45.8
Sopen06g031290 Solanum pennellii HOM05D004863 ORTHO05D005802 1.4e-90 337.8 494 45.1
SGA_v2.0_scaffold60G20969 Striga asiatica HOM05D004863 ORTHO05D005802 7.6e-89 332.0 505 44.8
MSTRG.8933 Avicennia marina HOM05D004863 ORTHO05D005802 1.1e-87 328.2 497 45.9
Sabra08G0053500 Salix brachista HOM05D004863 ORTHO05D005802 3.0e-85 320.1 486 45.5
Nitab4.5_0001163g0110 Nicotiana tabacum HOM05D004863 ORTHO05D005802 5.1e-85 319.3 527 41.6
Nitab4.5_0012306g0020 Nicotiana tabacum HOM05D004863 ORTHO05D005802 1.9e-84 317.4 535 40.9
CsaV3_5G010370 Cucumis sativus L. HOM05D004863 ORTHO05D005802 1.1e-82 311.6 498 45.0
PGR142G2246 Punica granatum HOM05D004863 ORTHO05D005802 1.8e-82 310.8 491 44.8
MELO3C018373.2 Cucumis melo HOM05D004863 ORTHO05D005802 5.8e-81 305.8 494 44.5
MD12G1179600 Malus domestica HOM05D004863 ORTHO05D005802 9.9e-81 305.1 437 47.8
LjContig00357g0010590 Lotus japonicus HOM05D004863 ORTHO05D005802 6.4e-80 302.4 492 42.5
Eucgr.G03083 Eucalyptus grandis HOM05D004863 ORTHO05D005802 4.6e-78 296.2 479 43.4
GSVIVG01032766001 Vitis vinifera HOM05D004863 ORTHO05D005802 4.6e-78 296.2 488 44.7
Sed0025167 Sechium edule HOM05D004863 ORTHO05D005802 1.3e-77 294.7 435 46.0
Cc02_g05730 Coffea canephora HOM05D004863 ORTHO05D005802 2.3e-77 293.9 491 45.2
THA.LOC104816534 Tarenaya hassleriana HOM05D004863 ORTHO05D005802 1.9e-76 290.8 474 42.6
CAN.G1432.18 Capsicum annuum HOM05D004863 ORTHO05D005802 9.6e-76 288.5 497 41.2
Atru.chr12.77 Acer truncatum HOM05D004863 ORTHO05D005802 2.4e-74 283.9 496 42.5
Ca_05985_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 2.9e-72 276.9 486 43.2
Cpa.g.sc19.141 Carica papaya HOM05D004863 ORTHO05D005802 8.4e-72 275.4 531 39.4
Rhsim09G0179600 Rhododendron simsii HOM05D004863 ORTHO05D005802 1.4e-71 274.6 535 39.4
Glyma.14G057200 Glycine max HOM05D004863 ORTHO05D005802 1.0e-69 268.5 481 41.2
VMungo0647G0293 Vigna mungo HOM05D004863 ORTHO05D005802 1.0e-69 268.5 465 42.6
TAR357G0004 Trochodendron aralioides HOM05D004863 ORTHO05D005802 1.9e-68 264.2 476 39.7
CARHR207780 Cardamine hirsuta HOM05D004863 ORTHO05D005802 3.3e-68 263.5 487 39.8
ECA233G5735 Erigeron canadensis HOM05D000718 ORTHO05D005802 7.4e-68 262.3 487 39.8
Phvul.007G217900 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 1.6e-67 261.2 480 40.6
Aa31LG11G6560 Aethionema arabicum HOM05D004863 ORTHO05D005802 6.2e-67 259.2 548 38.7
Aqoxy1G01634 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 1.2e-65 255.0 493 39.1
Phvul.008G221700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 1.2e-65 255.0 459 42.0
Aqoxy5G04144 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 1.5e-65 254.6 492 38.8
BcaC06g32260 Brassica carinata HOM05D004863 ORTHO05D005297 2.6e-65 253.8 478 39.5
Sc10g0002560 Simmondsia chinensis HOM05D004863 ORTHO05D005802 5.8e-65 252.7 498 40.4
Thhalv10013002m.g Eutrema salsugineum HOM05D004863 ORTHO05D005802 2.9e-64 250.4 479 39.2
Phvul.001G192700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 4.9e-64 249.6 484 40.1
AL6G15380 Arabidopsis lyrata HOM05D004863 ORTHO05D005802 3.5e-62 243.4 478 38.3
AUR62012290 Chenopodium quinoa HOM05D004863 ORTHO05D005802 6.0e-62 242.7 504 37.7
arahy.Tifrunner.gnm1.ann1.U87T4F Arachis hypogaea HOM05D004863 ORTHO05D005802 1.0e-61 241.9 509 37.7
Lalb_Chr10g0105231 Lupinus albus HOM05D004863 ORTHO05D005802 1.0e-61 241.9 340 45.3
RcHm_v2.0_Chr7g0231181 Rosa chinensis HOM05D004863 ORTHO05D005802 1.0e-61 241.9 127 94.5
Duzib128G0112 Durio zibethinus HOM05D004863 ORTHO05D005802 1.3e-61 241.5 517 38.9
arahy.Tifrunner.gnm1.ann1.SVWC8K Arachis hypogaea HOM05D004863 ORTHO05D005802 1.8e-61 241.1 516 37.6
COL.COLO4_25779 Corchorus olitorius HOM05D007663 ORTHO05D009455 1.9e-60 237.7 486 39.5
ECA234G2111 Erigeron canadensis HOM05D004863 ORTHO05D005802 1.9e-60 237.7 474 38.0
Nn2g10959 Nelumbo nucifera HOM05D004863 ORTHO05D005802 7.4e-60 235.7 495 37.8
AT5G05490 Arabidopsis thaliana HOM05D004863 ORTHO05D005802 9.6e-60 235.3 478 37.9
A10p30780 Brassica napus HOM05D004863 ORTHO05D005297 2.1e-59 234.2 466 37.6
Ah.16g103820 Amaranthus hybridus HOM05D004863 ORTHO05D005802 4.8e-59 233.0 509 37.1
PSO017G6293 Papaver somniferum HOM05D004863 ORTHO05D005802 4.8e-59 233.0 507 37.1
Sp6g37360 Schrenkiella parvula HOM05D004863 ORTHO05D005802 4.8e-59 233.0 481 37.8
BraA10t45119Z Brassica rapa HOM05D004863 ORTHO05D005297 8.2e-59 232.3 473 37.4
C09p71270 Brassica napus HOM05D004863 ORTHO05D005297 1.4e-58 231.5 476 39.1
BolC9t59888H Brassica oleracea HOM05D004863 ORTHO05D005802 1.4e-58 231.5 476 39.1
Psat2g030120 Pisum sativum HOM05D004863 ORTHO05D005802 1.4e-58 231.5 488 37.9
Ca_05983_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 1.8e-58 231.1 398 43.7
EL10Ac2g04883 Beta vulgaris HOM05D004863 ORTHO05D005802 6.9e-58 229.2 509 35.6
Sed0002460 Sechium edule HOM05D004863 ORTHO05D005802 9.0e-58 228.8 429 41.0
PSO170G5836 Papaver somniferum HOM05D004863 ORTHO05D005802 1.2e-57 228.4 513 36.8
RcHm_v2.0_Chr7g0236431 Rosa chinensis HOM05D004863 ORTHO05D005802 1.5e-57 228.0 374 42.8
Carub.0006s0439 Capsella rubella HOM05D004863 ORTHO05D005802 3.4e-57 226.9 479 37.2
Ah.16g108070 Amaranthus hybridus HOM05D004863 ORTHO05D005802 7.6e-57 225.7 505 37.0
Lj4g0013997 Lotus japonicus HOM05D004863 ORTHO05D005802 1.2e-54 218.4 483 36.9
RcHm_v2.0_Chr7g0231171 Rosa chinensis HOM05D004863 ORTHO05D005802 3.0e-53 213.8 136 82.4
Solyc06g074870.3 Solanum lycopersicum HOM05D004863 ORTHO05D005802 1.5e-52 211.5 397 40.1
ClCG07G004460 Citrullus lanatus HOM05D004863 ORTHO05D005802 1.9e-52 211.1 454 39.6
Medtr5g083120 Medicago truncatula HOM05D004863 ORTHO05D005802 1.9e-52 211.1 486 37.9
Gorai.012G078600 Gossypium raimondii HOM05D004863 ORTHO05D005802 7.4e-52 209.1 450 36.0
EL10Ac8g19300 Beta vulgaris HOM05D004863 ORTHO05D005802 9.7e-52 208.8 553 33.1
Gohir.D04G070101 Gossypium hirsutum HOM05D004863 ORTHO05D005802 9.7e-52 208.8 450 36.0
Actinidia00966 Actinidia chinensis HOM05D004863 ORTHO05D005802 1.3e-51 208.4 357 44.5
Peaxi162Scf00114g01014 Petunia axillaris HOM05D004863 ORTHO05D005802 2.4e-50 204.1 397 40.3
Gohir.A05G331501 Gossypium hirsutum HOM05D004863 ORTHO05D005802 4.1e-50 203.4 453 36.4
TPR.G38454 Trifolium pratense HOM05D004863 ORTHO05D005802 1.9e-47 194.5 522 35.8
TPR.G25338 Trifolium pratense HOM05D004863 ORTHO05D005802 2.5e-47 194.1 367 39.5
FAN18G1063 Fragaria x ananassa HOM05D004863 ORTHO05D005802 1.2e-46 191.8 164 64.0
AUR62022930 Chenopodium quinoa HOM05D004863 ORTHO05D005802 1.0e-45 188.7 488 35.7
RcHm_v2.0_Chr7g0230591 Rosa chinensis HOM05D004863 ORTHO05D005802 1.7e-40 171.4 91 92.3
Medtr5g081260 Medicago truncatula HOM05D004863 ORTHO05D005802 5.0e-40 169.9 358 38.3
MBI03_g10782_MAGBIO Magnolia biondii HOM05D004863 ORTHO05D005802 8.5e-40 169.1 354 39.5
RcHm_v2.0_Chr7g0231161 Rosa chinensis HOM05D004863 ORTHO05D005802 4.7e-38 163.3 104 79.8
FAN18G1445 Fragaria x ananassa HOM05D004863 ORTHO05D005802 7.9e-38 162.5 202 52.5
DCAR_011837 Daucus carota HOM05D004863 ORTHO05D001062 1.8e-37 161.4 477 32.7
RcHm_v2.0_Chr0c11g0499571 Rosa chinensis HOM05D004863 ORTHO05D005802 2.8e-35 154.1 74 100.0
CAN.G1001.50 Capsicum annuum HOM05D004863 ORTHO05D005802 8.2e-35 152.5 144 54.2
unitig_46.g18609 Utricularia gibba HOM05D004863 ORTHO05D005802 1.8e-34 151.4 263 41.4
Glyma.02G263700 Glycine max HOM05D004863 ORTHO05D005802 3.1e-34 150.6 391 35.8
TAR362G0045 Trochodendron aralioides HOM05D004863 ORTHO05D005802 9.4e-31 139.0 170 48.8
HPP92_003692 Vanilla planifolia HOM05D004863 ORTHO05D005802 9.4e-31 139.0 485 28.7
FvH4_5g27761 Fragaria vesca HOM05D004863 ORTHO05D005802 4.7e-30 136.7 136 60.3
PSO170G1093 Papaver somniferum HOM05D004863 ORTHO05D005802 1.0e-29 135.6 481 31.6
CDE09G0264 Ceratophyllum demersum HOM05D004863 ORTHO05D005802 3.7e-27 127.1 253 38.7
FvH4_5g31060 Fragaria vesca HOM05D004863 ORTHO05D005802 3.7e-27 127.1 92 70.7
RcHm_v2.0_Chr5g0049701 Rosa chinensis HOM05D004863 ORTHO05D005802 3.1e-26 124.0 65 90.8
PSO063G7659 Papaver somniferum HOM05D004863 ORTHO05D005802 3.0e-21 107.5 114 50.0
CSS0049037 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 2.0e-20 104.8 234 38.0
CSS0008249 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 2.6e-20 104.4 228 39.0
Thecc.10G012000 Theobroma cacao HOM05D004863 ORTHO05D005802 8.2e-19 99.4 79 57.0
SEGI_17620 Sequoiadendron giganteum HOM05D004863 ORTHO05D005802 3.1e-18 97.4 393 27.5
HanXRQChr08g0221801 Helianthus annuus HOM05D004863 ORTHO05D005802 4.1e-18 97.1 122 44.3
ATR0174G036 Amborella trichopoda HOM05D004863 ORTHO05D005802 4.5e-17 93.6 506 27.1
PSO017G2966 Papaver somniferum HOM05D004863 ORTHO05D005802 5.5e-15 86.7 444 29.1
Pp3c3_26738 Physcomitrium patens HOM05D004863 ORTHO05D005802 1.3e-11 75.5 427 25.5
Oeu041939.1 Olea europaea HOM05D004863 ORTHO05D005802 1.0e-08 65.9 56 58.9
PSO063G5055 Papaver somniferum HOM05D003057 ORTHO05D003904 1.9e-07 61.6 109 36.7
PSO478G0733 Papaver somniferum HOM05D000294 ORTHO05D000177 5.5e-07 60.1 111 39.6
FvH4_5g31180 Fragaria vesca HOM05D000076 ORTHO05D005802 1.6e-06 58.5 53 56.6
Ca_05986_v3 Cicer arietinum L. HOM05D001661 ORTHO05D001575 2.1e-06 58.2 102 42.2


User provided reference genes

Program Settings