Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 0.0e+00 1937.2 983 100.0
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 0.0e+00 1884.0 983 97.8
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 0.0e+00 1481.1 996 78.4
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 0.0e+00 1451.4 1051 74.6
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 0.0e+00 1213.4 955 68.6
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 0.0e+00 1148.3 990 62.7
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 0.0e+00 1117.4 997 62.1
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 0.0e+00 1108.2 949 62.8
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 0.0e+00 1101.3 986 61.9
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 0.0e+00 1092.4 1000 61.5
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 0.0e+00 1080.1 1007 59.3
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 0.0e+00 1079.7 961 61.7
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 2.0e-311 1072.4 907 63.5
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 6.9e-307 1057.4 1006 59.6
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 4.6e-303 1044.6 988 58.1
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 3.0e-302 1042.0 866 64.2
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 3.9e-302 1041.6 965 59.4
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 4.8e-300 1034.6 988 57.9
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 4.0e-299 1031.6 960 59.5
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.2e-298 1030.0 976 58.7
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 1.2e-298 1030.0 1012 57.9
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 1.2e-298 1030.0 995 56.7
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 4.2e-296 1021.5 991 57.5
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 9.3e-296 1020.4 995 57.6
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 1.0e-294 1016.9 1003 57.8
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 1.8e-294 1016.1 1012 57.3
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 6.2e-292 1007.7 984 57.6
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 4.0e-291 1005.0 991 56.6
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 9.3e-288 993.8 959 57.6
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 6.0e-287 991.1 991 57.8
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 3.0e-286 988.8 1007 56.1
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 5.1e-286 988.0 982 56.3
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 6.7e-286 987.6 997 56.1
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 2.2e-284 982.6 986 56.3
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 4.8e-284 981.5 1019 56.3
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 7.7e-282 974.2 995 55.5
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 1.3e-281 973.4 969 56.7
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 4.2e-280 968.4 908 57.8
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 3.6e-279 965.3 995 55.0
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 6.1e-279 964.5 999 55.0
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 1.0e-278 963.8 997 55.7
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 8.8e-278 960.7 989 55.4
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 1.1e-277 960.3 982 55.5
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 2.5e-277 959.1 994 55.9
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 1.7e-276 956.4 1020 55.1
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 2.2e-276 956.1 1045 54.8
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 2.4e-275 952.6 991 54.6
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 4.2e-272 941.8 997 54.9
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 7.9e-271 937.6 1002 54.0
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 3.7e-268 928.7 992 54.1
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 3.7e-268 928.7 992 54.0
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 2.0e-266 922.9 1000 53.5
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 1.9e-264 916.4 946 54.8
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 2.1e-263 912.9 991 53.0
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 1.5e-261 906.7 861 58.0
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 4.1e-259 898.7 995 53.6
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 3.8e-257 892.1 896 54.5
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 1.1e-256 890.6 898 54.7
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 3.2e-256 889.0 722 65.4
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 1.4e-254 883.6 1006 51.1
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 3.0e-254 882.5 748 63.1
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 4.0e-254 882.1 951 52.6
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 7.5e-253 877.9 1025 50.8
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 6.3e-252 874.8 970 51.8
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 2.0e-250 869.8 1000 50.7
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 2.7e-250 869.4 954 52.6
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 1.7e-249 866.7 881 54.1
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 6.8e-246 854.7 885 54.2
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 4.5e-242 842.0 975 50.3
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 3.0e-238 829.3 1021 49.2
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 1.3e-236 823.9 892 51.9
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 5.0e-233 812.0 912 52.2
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 1.2e-231 807.4 857 52.5
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 4.7e-231 805.4 962 48.4
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 1.0e-230 804.3 998 47.4
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 1.3e-228 797.3 930 50.6
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 1.4e-227 793.9 963 49.0
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 3.9e-225 785.8 975 47.9
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 1.1e-224 784.3 909 50.4
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 1.5e-224 783.9 958 48.3
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 1.9e-224 783.5 867 52.4
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 4.3e-224 782.3 741 58.6
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 8.0e-223 778.1 967 46.9
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 3.1e-222 776.2 859 52.4
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 8.9e-222 774.6 973 47.2
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 1.3e-220 770.8 933 49.1
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 3.9e-217 759.2 1011 46.3
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 1.1e-214 751.1 907 49.1
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 1.8e-214 750.4 888 49.1
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 2.6e-213 746.5 900 48.3
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 4.9e-212 742.3 1006 44.9
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 6.4e-212 741.9 713 57.8
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 2.4e-211 740.0 949 47.4
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 4.3e-208 729.2 700 58.7
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 2.2e-204 716.8 959 45.7
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 1.1e-203 714.5 876 47.4
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 1.0e-193 681.4 619 59.3
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 2.3e-193 680.2 870 47.5
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 2.7e-186 656.8 682 54.4
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 9.6e-184 648.3 922 43.5
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 1.5e-173 614.4 725 50.9
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 3.5e-149 533.5 1071 36.4
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 4.5e-149 533.1 479 58.5
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 1.6e-146 524.6 946 37.9
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 7.7e-141 505.8 981 36.6
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 5.5e-139 499.6 969 36.4
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 3.0e-137 493.8 827 39.1
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 1.3e-116 425.2 1179 30.6
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 1.0e-108 399.1 457 50.1
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 1.1e-75 289.3 947 28.3
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 1.8e-52 212.2 492 32.1
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 1.3e-47 196.1 416 32.9
Peaxi162Scf00305g00615 Petunia axillaris HOM05D006375 ORTHO05D008188 2.9e-47 194.9 285 44.2
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 1.2e-37 162.9 249 34.9
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 1.1e-33 149.8 148 53.4
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 1.3e-26 126.3 311 30.5
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 2.4e-25 122.1 250 30.4
FAN26G2035 Fragaria x ananassa HOM05D006375 ORTHO05D008188 3.1e-25 121.7 184 44.6
CAN.G222.26 Capsicum annuum HOM05D006375 ORTHO05D008188 8.3e-18 97.1 213 40.4
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 5.9e-16 90.9 191 27.2
SHI25356 Sapria himalayana HOM05D006375 ORTHO05D008188 1.9e-14 85.9 85 54.1
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 6.1e-13 80.9 112 42.9
SHI25355 Sapria himalayana HOM05D006375 ORTHO05D000014 1.7e-07 62.8 152 32.2


User provided reference genes

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