Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p030812 Quercus lobata HOM05D001937 ORTHO05D003828 6.8e-174 614.0 332 100.0
QL03p072736 Quercus lobata HOM05D001937 ORTHO05D003828 4.2e-115 418.7 244 93.9
CiPaw.05G030600 Carya illinoinensis HOM05D001937 ORTHO05D003828 8.7e-105 384.4 346 63.0
Cfa005699 Carpinus fangiana HOM05D001937 ORTHO05D007024 8.5e-92 341.3 346 61.0
GSVIVG01020528001 Vitis vinifera HOM05D001937 ORTHO05D003828 1.5e-80 303.9 344 57.0
ClCG09G008530 Citrullus lanatus HOM05D001937 ORTHO05D003828 2.0e-77 293.5 337 54.9
MELO3C021095.2 Cucumis melo HOM05D001937 ORTHO05D003828 2.5e-75 286.6 337 54.0
TAR374G1188 Trochodendron aralioides HOM05D001937 ORTHO05D003828 5.5e-75 285.4 348 53.7
Prupe.1G559000 Prunus persica HOM05D001937 ORTHO05D003828 7.2e-75 285.0 338 52.1
Manes.07G036600 Manihot esculenta HOM05D001937 ORTHO05D003828 2.1e-74 283.5 339 54.0
CsaV3_7G026510 Cucumis sativus L. HOM05D001937 ORTHO05D003828 6.1e-74 282.0 337 53.7
RcHm_v2.0_Chr3g0492481 Rosa chinensis HOM05D001937 ORTHO05D003828 6.1e-74 282.0 340 53.8
vmacro19954 Vaccinium macrocarpon HOM05D001937 ORTHO05D003828 8.0e-74 281.6 330 55.2
MD04G1047300 Malus domestica HOM05D001937 ORTHO05D003828 1.8e-73 280.4 342 54.4
Rhsim05G0102300 Rhododendron simsii HOM05D001937 ORTHO05D003828 1.2e-72 277.7 330 54.5
Haze_10549 Corylus avellana HOM05D001937 ORTHO05D007024 2.6e-72 276.6 356 51.7
Dinv24157 Davidia involucrata HOM05D001937 ORTHO05D003828 2.6e-72 276.6 368 51.1
QL11p053735 Quercus lobata HOM05D001937 ORTHO05D003828 1.4e-70 270.8 168 91.1
QL11p029100 Quercus lobata HOM05D001937 ORTHO05D003828 1.8e-70 270.4 168 91.7
QL03p022329 Quercus lobata HOM05D001937 ORTHO05D003828 4.1e-70 269.2 168 90.5
QL03p060281 Quercus lobata HOM05D001937 ORTHO05D003828 5.4e-70 268.9 168 91.7
FAN28G0964 Fragaria x ananassa HOM05D001937 ORTHO05D003828 4.5e-69 265.8 329 54.4
Glyma.09G215000 Glycine max HOM05D001937 ORTHO05D003828 5.9e-69 265.4 324 50.9
VMungo1215G1229 Vigna mungo HOM05D001937 ORTHO05D003828 2.9e-68 263.1 372 49.5
FAN23G0892 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.1e-67 261.2 337 50.1
Cc02_g20980 Coffea canephora HOM05D001937 ORTHO05D003828 1.2e-66 257.7 359 48.2
Lj2g0019889 Lotus japonicus HOM05D001937 ORTHO05D003828 1.2e-66 257.7 332 49.1
Phvul.002G127400 Phaseolus vulgaris HOM05D001937 ORTHO05D003828 2.1e-66 256.9 372 49.2
CANSAT11G1347 Cannabis sativa HOM05D001937 ORTHO05D003828 3.6e-66 256.1 337 51.6
Glyma.04G123500 Glycine max HOM05D001937 ORTHO05D003828 8.0e-66 255.0 324 52.5
Nn2g11723 Nelumbo nucifera HOM05D001937 ORTHO05D003828 5.2e-65 252.3 333 52.9
Nitab4.5_0005574g0040 Nicotiana tabacum HOM05D001937 ORTHO05D003828 6.8e-65 251.9 357 48.2
Ca_25089_v3 Cicer arietinum L. HOM05D001937 ORTHO05D003828 2.0e-64 250.4 372 48.1
FvH4_1g29900 Fragaria vesca HOM05D001937 ORTHO05D003828 2.6e-64 250.0 330 52.4
Nitab4.5_0000244g0410 Nicotiana tabacum HOM05D001937 ORTHO05D003828 3.4e-64 249.6 357 46.5
FAN26G2897 Fragaria x ananassa HOM05D001937 ORTHO05D003828 9.8e-64 248.1 337 49.0
Duzib212G0078 Durio zibethinus HOM05D001937 ORTHO05D003828 2.2e-63 246.9 345 50.1
Psat2g142560 Pisum sativum HOM05D001937 ORTHO05D003828 2.8e-63 246.5 342 47.4
Nn1g09835 Nelumbo nucifera HOM05D001937 ORTHO05D003828 2.4e-62 243.4 346 48.8
Sc25g0001620 Simmondsia chinensis HOM05D001937 ORTHO05D003828 2.4e-62 243.4 328 48.2
DCAR_008727 Daucus carota HOM05D001937 ORTHO05D003828 4.1e-62 242.7 328 51.5
Medtr5g026660 Medicago truncatula HOM05D001937 ORTHO05D003828 5.4e-62 242.3 373 46.9
Ciclev10004125m.g Citrus clementina HOM05D001937 ORTHO05D003828 1.6e-61 240.7 344 50.0
FAN19G2543 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.6e-61 240.7 329 48.3
Sopen07g002920 Solanum pennellii HOM05D001937 ORTHO05D003828 2.0e-61 240.4 363 45.7
TWI23G0701 Tripterygium wilfordii HOM05D001937 ORTHO05D003828 4.5e-61 239.2 345 46.7
Migut.B00560 Erythranthe guttata HOM05D001937 ORTHO05D003828 5.9e-61 238.8 361 44.0
Solyc07g006820.4 Solanum lycopersicum HOM05D001937 ORTHO05D003828 7.8e-61 238.4 352 45.7
Gohir.A10G142200 Gossypium hirsutum HOM05D001937 ORTHO05D003828 2.3e-60 236.9 346 49.4
PGR042G3669 Punica granatum HOM05D001937 ORTHO05D003828 5.0e-60 235.7 359 43.5
CSS0032005 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D003828 6.6e-60 235.3 365 46.8
CSS0037154 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D003828 6.6e-60 235.3 365 46.8
Eucgr.I02627 Eucalyptus grandis HOM05D001937 ORTHO05D003828 6.6e-60 235.3 342 45.3
TWI14G0424 Tripterygium wilfordii HOM05D001937 ORTHO05D003828 1.1e-59 234.6 340 48.8
Gohir.D10G124300 Gossypium hirsutum HOM05D001937 ORTHO05D003828 4.3e-59 232.6 346 48.8
Lalb_Chr09g0325221 Lupinus albus HOM05D001937 ORTHO05D003828 7.3e-59 231.9 370 46.5
Hund12383 Selenicereus undatus HOM05D001937 ORTHO05D003828 9.5e-59 231.5 326 47.9
Gorai.011G137400 Gossypium raimondii HOM05D001937 ORTHO05D003828 2.8e-58 229.9 346 48.6
Actinidia28033 Actinidia chinensis HOM05D001937 ORTHO05D003828 4.7e-58 229.2 316 46.8
EL10Ac3g06089 Beta vulgaris HOM05D001937 ORTHO05D003828 6.1e-58 228.8 353 43.3
Sabra07G0092600 Salix brachista HOM05D001937 ORTHO05D003828 6.1e-58 228.8 327 46.5
Thecc.04G168700 Theobroma cacao HOM05D001937 ORTHO05D003828 1.0e-57 228.0 343 49.0
Potri.017G047600 Populus trichocarpa HOM05D001937 ORTHO05D003828 1.8e-57 227.3 327 49.5
COL.COLO4_05351 Corchorus olitorius HOM05D001937 ORTHO05D003828 3.4e-56 223.0 345 44.3
PSO063G3818 Papaver somniferum HOM05D001937 ORTHO05D003828 4.4e-56 222.6 327 46.8
PSO782G5216 Papaver somniferum HOM05D001937 ORTHO05D003828 4.4e-56 222.6 327 45.6
Potri.007G113300 Populus trichocarpa HOM05D001937 ORTHO05D003828 4.4e-56 222.6 327 46.8
ATR1120G087 Amborella trichopoda HOM05D001937 ORTHO05D003828 9.8e-56 221.5 374 42.0
Aqoxy4G02410 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 2.2e-55 220.3 378 42.3
Lj2C174G11 Lonicera japonica HOM05D001937 ORTHO05D003828 2.2e-55 220.3 309 47.9
Sabra17G0032100 Salix brachista HOM05D001937 ORTHO05D003828 3.2e-54 216.5 327 45.9
Ciclev10004140m.g Citrus clementina HOM05D001937 ORTHO05D003828 6.0e-53 212.2 323 48.3
Atru.chr8.1124 Acer truncatum HOM05D001937 ORTHO05D003828 1.3e-52 211.1 297 53.2
unitig_46.g18832 Utricularia gibba HOM05D001937 ORTHO05D003828 2.5e-51 206.8 356 40.4
CAN.G584.7 Capsicum annuum HOM05D001937 ORTHO05D003828 3.3e-51 206.5 352 42.0
ECA246G2336 Erigeron canadensis HOM05D001937 ORTHO05D003828 4.3e-51 206.1 345 43.8
Sp1g28210 Schrenkiella parvula HOM05D001937 ORTHO05D003828 5.6e-51 205.7 350 44.0
Lalb_Chr05g0215381 Lupinus albus HOM05D001937 ORTHO05D003828 2.1e-50 203.8 339 45.4
Sed0011905 Sechium edule HOM05D001937 ORTHO05D003828 3.6e-50 203.0 277 50.2
TPR.G17275 Trifolium pratense HOM05D001937 ORTHO05D003828 3.6e-50 203.0 341 45.2
Dinv15990 Davidia involucrata HOM05D001937 ORTHO05D003828 1.8e-49 200.7 284 50.0
FvH4_3g05980 Fragaria vesca HOM05D001937 ORTHO05D003828 4.0e-49 199.5 244 53.7
FAN25G3599 Fragaria x ananassa HOM05D001937 ORTHO05D003828 6.8e-49 198.7 243 53.9
HanXRQChr05g0162901 Helianthus annuus HOM05D001937 ORTHO05D003828 6.8e-49 198.7 327 42.2
HanXRQChr06g0170531 Helianthus annuus HOM05D001937 ORTHO05D003828 1.2e-48 198.0 327 41.9
Oeu029676.1 Olea europaea HOM05D001937 ORTHO05D003828 1.2e-48 198.0 403 37.7
Cpa.g.sc177.20 Carica papaya HOM05D001937 ORTHO05D003828 2.6e-48 196.8 416 37.3
BolC8t47960H Brassica oleracea HOM05D001937 ORTHO05D003828 4.4e-48 196.1 354 43.2
Thhalv10006532m.g Eutrema salsugineum HOM05D001937 ORTHO05D003828 5.8e-48 195.7 361 41.8
Lsat_1_v5_gn_6_102941 Lactuca sativa HOM05D001937 ORTHO05D003828 9.8e-48 194.9 336 41.4
A08p09140 Brassica napus HOM05D001937 ORTHO05D003828 1.3e-47 194.5 363 42.7
BraA08t32916Z Brassica rapa HOM05D001937 ORTHO05D003828 1.3e-47 194.5 363 42.7
BcaB04g17964 Brassica carinata HOM05D001937 ORTHO05D003828 1.7e-47 194.1 354 42.7
BcaC07g37602 Brassica carinata HOM05D001937 ORTHO05D003828 2.9e-47 193.4 354 42.7
Carub.0001s3108 Capsella rubella HOM05D001937 ORTHO05D003828 2.9e-47 193.4 352 42.6
THA.LOC104811101 Tarenaya hassleriana HOM05D001937 ORTHO05D003828 6.4e-47 192.2 349 42.4
PSO675G8698 Papaver somniferum HOM05D001937 ORTHO05D003828 8.3e-47 191.8 327 41.6
AL1G47030 Arabidopsis lyrata HOM05D001937 ORTHO05D003828 1.4e-46 191.0 351 42.5
AT1G32750 Arabidopsis thaliana HOM05D001937 ORTHO05D003828 1.4e-46 191.0 350 42.3
FAN11G3092 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.9e-46 190.7 248 52.4
RcHm_v2.0_Chr5g0013481 Rosa chinensis HOM05D001937 ORTHO05D003828 2.7e-45 186.8 225 53.3
arahy.Tifrunner.gnm1.ann1.4559ZH Arachis hypogaea HOM05D001937 ORTHO05D003828 7.8e-45 185.3 340 43.5
arahy.Tifrunner.gnm1.ann1.9SH8TS Arachis hypogaea HOM05D001937 ORTHO05D003828 7.8e-45 185.3 340 43.5
AUR62023793 Chenopodium quinoa HOM05D001937 ORTHO05D003828 8.6e-44 181.8 354 38.1
FAN21G3055 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.9e-43 180.6 248 53.6
CDE08G1500 Ceratophyllum demersum HOM05D001937 ORTHO05D003828 7.3e-43 178.7 325 41.8
QL04p008924 Quercus lobata HOM05D001937 ORTHO05D003828 7.3e-43 178.7 168 68.5
QL12p036527 Quercus lobata HOM05D001937 ORTHO05D003828 7.3e-43 178.7 168 68.5
Rhsim05G0102700 Rhododendron simsii HOM05D001937 ORTHO05D009414 7.3e-43 178.7 297 41.1
Peaxi162Scf00610g00377 Petunia axillaris HOM05D001937 ORTHO05D003828 6.2e-42 175.6 352 38.6
Aa31LG2G13230 Aethionema arabicum HOM05D001937 ORTHO05D003828 7.5e-40 168.7 354 39.8
AL3G32430 Arabidopsis lyrata HOM05D001937 ORTHO05D003828 4.9e-39 166.0 346 38.2
CARHR032130 Cardamine hirsuta HOM05D001937 ORTHO05D003828 3.2e-38 163.3 352 38.9
HPP92_017202 Vanilla planifolia HOM05D001937 ORTHO05D003828 7.1e-38 162.2 265 41.5
AUR62002404 Chenopodium quinoa HOM05D001937 ORTHO05D003828 2.3e-36 157.1 354 35.0
QL02p062665 Quercus lobata HOM05D001937 ORTHO05D003828 5.1e-36 156.0 162 64.8
QL06p020738 Quercus lobata HOM05D001937 ORTHO05D003828 5.1e-36 156.0 162 64.8
SGA_v2.0_scaffold83G26356 Striga asiatica HOM05D001937 ORTHO05D003828 5.1e-36 156.0 359 35.7
Os06g0645800 Oryza sativa ssp. japonica HOM05D001937 ORTHO05D003828 2.2e-31 140.6 339 34.5
AT3G19040 Arabidopsis thaliana HOM05D001937 ORTHO05D003828 4.9e-31 139.4 369 32.8
Pp3c14_1870 Physcomitrium patens HOM05D001937 ORTHO05D003828 1.6e-29 134.4 339 37.8
Atru.chr3.3791 Acer truncatum HOM05D001937 ORTHO05D003828 1.0e-28 131.7 174 50.6
DCAR_019148 Daucus carota HOM05D001937 ORTHO05D003828 1.7e-28 131.0 274 38.3
Zm00001eb386900 Zea mays HOM05D001937 ORTHO05D003828 2.3e-28 130.6 350 32.6
BcaB04g20722 Brassica carinata HOM05D001937 ORTHO05D003828 1.9e-27 127.5 330 31.8
Sp3g17140 Schrenkiella parvula HOM05D001937 ORTHO05D003828 3.6e-26 123.2 302 33.8
BolC1t04467H Brassica oleracea HOM05D001937 ORTHO05D003828 4.7e-26 122.9 343 30.6
BraA01t03625Z Brassica rapa HOM05D001937 ORTHO05D003828 1.4e-25 121.3 344 32.8
Atru.chr3.3790 Acer truncatum HOM05D001937 ORTHO05D003828 4.0e-25 119.8 96 65.6
BcaC09g48870 Brassica carinata HOM05D001937 ORTHO05D003828 2.6e-24 117.1 343 30.6
A01p35430 Brassica napus HOM05D001937 ORTHO05D003828 2.6e-24 117.1 343 30.9
C01p44990 Brassica napus HOM05D001937 ORTHO05D003828 2.6e-24 117.1 343 30.6
Aqoxy3G01594 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 4.4e-24 116.3 219 40.2
PSO384G4225 Papaver somniferum HOM05D003118 ORTHO05D003618 2.9e-23 113.6 227 38.3
Mapoly0048s0004 Marchantia polymorpha HOM05D001937 ORTHO05D003828 1.6e-21 107.8 250 35.6
Prupe.1G009900 Prunus persica HOM05D001937 ORTHO05D003828 7.8e-21 105.5 185 44.9
Mapoly0010s0177 Marchantia polymorpha HOM05D001937 ORTHO05D003828 2.3e-20 104.0 338 32.2
SEGI_20322 Sequoiadendron giganteum HOM05D001937 ORTHO05D003828 8.7e-20 102.1 158 44.3
PSO266G0025 Papaver somniferum HOM05D048025 ORTHO05D003828 4.3e-19 99.8 243 35.4
Pp3c10_350 Physcomitrium patens HOM05D001937 ORTHO05D003828 5.6e-19 99.4 336 34.8
PSO266G0061 Papaver somniferum HOM05D001937 ORTHO05D003828 4.5e-16 89.7 211 33.2
SEGI_35630 Sequoiadendron giganteum HOM05D001937 ORTHO05D003828 5.8e-16 89.4 112 47.3
AagrBONN_evm.TU.Sc2ySwM_117.3403 Anthoceros agrestis HOM05D001937 ORTHO05D003828 2.1e-13 80.9 278 30.2
Lsat_1_v5_gn_4_144260 Lactuca sativa HOM05D001937 ORTHO05D003828 3.3e-11 73.6 68 66.2
Prupe.1G558900 Prunus persica HOM05D001937 ORTHO05D003828 4.8e-10 69.7 57 61.4
PSO384G0103 Papaver somniferum HOM05D048025 ORTHO05D003618 4.0e-09 66.6 133 32.3
Aa31LG2G13240 Aethionema arabicum HOM05D001937 ORTHO05D003828 5.3e-09 66.2 77 51.9
Aqoxy3G01486 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 1.1e-06 58.5 47 63.8


User provided reference genes

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