Gene: Pp3c14_1870
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c14_1870
- Transcript Identifier Pp3c14_1870V3.3
- Gene Type Coding gene
- Location Chr14 : 1298261-1311268 : positive
Gene Family Information
- ID HOM05D001937
- #Genes/#Species 341/100
- Phylogenetic origin
- ID ORTHO05D003828
- #Genes/#Species 203/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- name Pp3c14_1870V3.3
- pacid 32963129
- alias Phpat.014G004500
- alias Phypa_94126
- alias Pp1s255_25V6
- uniprot A0A2K1JG16
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0051123 | IBA | GOA Database | RNA polymerase II preinitiation complex assembly | |
| GO:0009294 | ISO | PLAZA Integrative Orthology | DNA mediated transformation | AT1G32750 |
| GO:0016573 | ISO | PLAZA Integrative Orthology | histone acetylation | AT3G19040 |
| GO:0009416 | ISO | PLAZA Integrative Orthology | response to light stimulus | AT3G19040 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0016251 | IBA | GOA Database | RNA polymerase II general transcription initiation factor activity | |
| GO:0017025 | IBA | GOA Database | TBP-class protein binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005669 | IBA | GOA Database | transcription factor TFIID complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR040240 | Transcription initiation factor TFIID subunit 1 |
| IPR001487 | Bromodomain |
| IPR036427 | Bromodomain-like superfamily |
| IPR029071 | Ubiquitin-like domain superfamily |
| IPR041670 | Zinc knuckle |
| IPR000626 | Ubiquitin-like domain |
| IPR009067 | TAFII-230 TBP-binding |
| IPR036741 | TAFII-230 TBP-binding domain superfamily |
| IPR022591 | Transcription initiation factor TFIID subunit 1, domain of unknown function |
| Mapman id | Description |
|---|---|
| 15.3.4.2.2 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component HAF/TAF1 |
| 15.3.4.3.3.4 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.SPT recruitment module.component HAF/TAF1 |