Gene: Sopen07g002920

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen07g002920
  • Transcript Identifier Sopen07g002920.2
  • Gene Type Coding gene
  • Location Spenn-ch07 : 1963918-1994084 : positive

Gene Family Information

  • ID HOM05D001937
  • #Genes/#Species 341/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen07g002920.2

Descriptions

  • Description This gene is predicted to encode a histone acetyltransferase. Five lines with RNAi constructs directed against HAF1 grow normally and can produce root calli, but have defects in agrobacterium-mediated transformation. | HAF01 | FUNCTIONS IN: histone acetyltransferase activity, DNA binding | INVOLVED IN: DNA mediated transformation | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: TAFII-230 TBP-binding , Ubiquitin , Ubiquitin supergroup , Bromodomain, conserved site , Bromodomain | BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the TAFII250 family 2
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009294
ISO
PLAZA Integrative OrthologyDNA mediated transformation AT1G32750
GO:0016573
ISO
PLAZA Integrative Orthologyhistone acetylation AT3G19040
GO:0009416
ISO
PLAZA Integrative Orthologyresponse to light stimulus AT3G19040

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR022591 Transcription initiation factor TFIID subunit 1, domain of unknown function
IPR000626 Ubiquitin-like domain
IPR036427 Bromodomain-like superfamily
IPR001487 Bromodomain
IPR036741 TAFII-230 TBP-binding domain superfamily
IPR040240 Transcription initiation factor TFIID subunit 1
IPR029071 Ubiquitin-like domain superfamily
IPR041670 Zinc knuckle
IPR009067 TAFII-230 TBP-binding
Mapman id Description
15.3.4.2.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component HAF/TAF1
15.3.4.3.3.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.SPT recruitment module.component HAF/TAF1