Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 0.0e+00 1345.1 685 100.0
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 0.0e+00 1088.2 695 83.6
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 1.3e-296 1022.7 688 78.8
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 2.3e-277 958.7 703 74.0
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 2.7e-273 945.3 709 71.5
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 1.2e-268 929.9 710 71.3
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 5.7e-268 927.5 710 71.7
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 2.2e-267 925.6 716 70.9
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 7.7e-265 917.1 713 71.0
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 2.1e-262 909.1 701 70.8
Dinv38802 Davidia involucrata HOM05D005511 ORTHO05D006616 8.0e-262 907.1 689 72.9
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 8.9e-261 903.7 701 70.6
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 9.8e-260 900.2 702 69.4
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 2.2e-259 899.0 706 71.4
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 1.1e-258 896.7 705 69.2
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 1.1e-258 896.7 705 70.6
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 1.0e-256 890.2 697 69.6
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 8.6e-256 887.1 698 70.3
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 7.3e-255 884.0 710 69.0
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 5.2e-253 877.9 701 68.5
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 6.8e-253 877.5 699 68.5
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 2.6e-252 875.5 700 68.4
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 3.4e-252 875.2 683 70.9
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 1.7e-251 872.8 737 67.8
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 3.2e-250 868.6 697 67.9
GSVIVG01014608001 Vitis vinifera HOM05D005511 ORTHO05D006616 3.2e-250 868.6 702 68.8
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 7.0e-250 867.5 701 68.2
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 7.0e-250 867.5 699 68.1
Cpa.g.sc81.17 Carica papaya HOM05D005511 ORTHO05D006616 9.2e-250 867.1 701 69.2
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 9.2e-250 867.1 700 68.3
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 3.5e-249 865.1 704 68.9
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 1.5e-247 859.8 701 68.0
Lj1g0000151 Lotus japonicus HOM05D005511 ORTHO05D006616 5.6e-247 857.8 707 67.6
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 1.8e-245 852.8 701 67.9
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 3.1e-245 852.0 703 68.1
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 1.2e-244 850.1 701 67.5
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 2.3e-237 825.9 715 67.7
DCAR_027476 Daucus carota HOM05D005511 ORTHO05D006616 5.2e-237 824.7 723 63.5
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 1.1e-234 817.0 700 66.0
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.3e-232 810.1 696 66.2
Peaxi162Scf00096g01112 Petunia axillaris HOM05D005511 ORTHO05D006616 2.4e-229 799.3 695 65.6
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 3.4e-228 795.4 702 66.7
CAN.G841.12 Capsicum annuum HOM05D005511 ORTHO05D006616 5.8e-228 794.7 696 64.5
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 1.3e-227 793.5 714 65.1
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.3e-227 793.5 697 65.0
CAN.G423.39 Capsicum annuum HOM05D005511 ORTHO05D006616 1.7e-227 793.1 698 64.6
Cc03_g10050 Coffea canephora HOM05D005511 ORTHO05D006616 3.8e-227 792.0 696 64.8
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 4.9e-227 791.6 705 64.4
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 6.4e-227 791.2 695 65.9
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 1.9e-226 789.6 697 62.7
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 7.8e-225 784.3 649 68.0
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 7.8e-225 784.3 712 64.5
PGSC0003DMG400028246 Solanum tuberosum HOM05D005511 ORTHO05D006616 6.6e-224 781.2 694 64.1
Solyc10g083200.2 Solanum lycopersicum HOM05D005511 ORTHO05D006616 1.1e-223 780.4 695 63.7
Sopen10g032680 Solanum pennellii HOM05D005511 ORTHO05D006616 1.1e-223 780.4 695 63.7
Peaxi162Scf01013g00235 Petunia axillaris HOM05D005511 ORTHO05D006616 1.6e-222 776.5 698 64.5
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 1.1e-221 773.9 713 63.1
Nitab4.5_0000167g0180 Nicotiana tabacum HOM05D005511 ORTHO05D006616 4.4e-220 768.5 694 63.4
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 1.1e-218 763.8 701 65.3
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 4.2e-218 761.9 691 64.3
Hund14329 Selenicereus undatus HOM05D005511 ORTHO05D006616 7.1e-218 761.1 692 63.4
AT4G31200 Arabidopsis thaliana HOM05D005511 ORTHO05D006616 2.1e-217 759.6 694 61.1
Oeu009791.1 Olea europaea HOM05D005511 ORTHO05D006616 6.2e-214 748.0 693 61.5
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 4.0e-213 745.3 648 65.3
AL7G20880 Arabidopsis lyrata HOM05D005511 ORTHO05D006616 1.3e-211 740.3 692 60.1
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 2.4e-210 736.1 702 60.5
THA.LOC104819918 Tarenaya hassleriana HOM05D005511 ORTHO05D006616 5.4e-210 734.9 697 60.7
EL10Ac5g11907 Beta vulgaris HOM05D005511 ORTHO05D006616 7.1e-210 734.6 697 61.7
Oeu001428.2 Olea europaea HOM05D005511 ORTHO05D006616 9.3e-210 734.2 693 60.5
CSS0032846 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 2.1e-209 733.0 691 62.1
Carub.0007s0934 Capsella rubella HOM05D005511 ORTHO05D006616 4.6e-209 731.9 693 59.7
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 1.3e-208 730.3 700 60.9
CARHR239100 Cardamine hirsuta HOM05D005511 ORTHO05D006616 8.7e-208 727.6 698 59.6
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 4.3e-207 725.3 646 64.6
Oeu018783.1 Olea europaea HOM05D005511 ORTHO05D006616 7.4e-207 724.5 693 59.5
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 2.8e-206 722.6 697 58.0
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 9.0e-205 717.6 710 60.0
Ah.07g201420 Amaranthus hybridus HOM05D005511 ORTHO05D006616 5.8e-204 714.9 697 60.1
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 6.4e-203 711.4 703 59.3
Sp7g29080 Schrenkiella parvula HOM05D005511 ORTHO05D006616 1.3e-200 703.7 694 58.5
MBI02_g34313_MAGBIO Magnolia biondii HOM05D005511 ORTHO05D006616 1.9e-199 699.9 711 59.6
ECA234G2010 Erigeron canadensis HOM05D005511 ORTHO05D006616 1.4e-197 693.7 673 60.3
AUR62007421 Chenopodium quinoa HOM05D005511 ORTHO05D006616 3.1e-197 692.6 696 59.1
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 2.6e-196 689.5 719 58.6
HanXRQChr03g0093821 Helianthus annuus HOM05D005511 ORTHO05D006616 4.5e-196 688.7 697 58.2
Nitab4.5_0001579g0070 Nicotiana tabacum HOM05D005511 ORTHO05D006616 4.9e-195 685.3 743 56.4
BcaC09g51902 Brassica carinata HOM05D005511 ORTHO05D006616 2.5e-194 682.9 694 56.9
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 2.5e-194 682.9 692 58.2
C01p07790 Brassica napus HOM05D005511 ORTHO05D006616 3.2e-194 682.6 694 56.9
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 2.7e-193 679.5 696 56.9
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 1.1e-191 674.1 608 63.3
Sc03g0008920 Simmondsia chinensis HOM05D005511 ORTHO05D006616 3.3e-191 672.5 692 59.4
RcHm_v2.0_Chr6g0305221 Rosa chinensis HOM05D005511 ORTHO05D006616 1.3e-190 670.6 551 67.5
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 2.2e-190 669.8 707 55.6
BolC1t00765H Brassica oleracea HOM05D005511 ORTHO05D006616 1.8e-189 666.8 694 56.1
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 3.3e-183 646.0 701 58.3
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 1.7e-182 643.7 636 60.1
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 7.7e-180 634.8 549 64.5
Migut.H02336 Erythranthe guttata HOM05D005511 ORTHO05D006616 3.6e-177 625.9 697 55.4
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 6.7e-176 621.7 723 53.4
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 2.6e-175 619.8 550 63.5
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 1.1e-173 614.4 581 59.4
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 5.5e-170 602.1 730 52.6
Nn1g03658 Nelumbo nucifera HOM05D005511 ORTHO05D006616 4.7e-153 545.8 442 68.8
AUR62027311 Chenopodium quinoa HOM05D005511 ORTHO05D006616 4.8e-150 535.8 567 56.4
SGA_v2.0_scaffold188G40311 Striga asiatica HOM05D005511 ORTHO05D006616 2.1e-145 520.4 573 54.3
unitig_32.g11169 Utricularia gibba HOM05D005511 ORTHO05D006616 4.7e-145 519.2 597 53.4
Haze_21772 Corylus avellana HOM05D005511 ORTHO05D006616 6.8e-144 515.4 323 83.9
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 3.4e-143 513.1 350 78.3
Sc03g0008950 Simmondsia chinensis HOM05D005511 ORTHO05D006616 7.5e-143 511.9 502 60.2
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 4.0e-136 489.6 688 46.7
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 2.4e-133 480.3 359 74.1
Mapoly0058s0003 Marchantia polymorpha HOM05D005511 ORTHO05D006616 2.0e-132 477.2 675 46.1
Atru.chr7.2703 Acer truncatum HOM05D005511 ORTHO05D006616 5.1e-123 446.0 325 72.6
Sabra06G0216900 Salix brachista HOM05D005511 ORTHO05D006616 4.4e-119 433.0 351 68.4
Hma1.2p1_0379F.1_g139860 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 1.4e-112 411.4 321 69.2
Zm00001eb273620 Zea mays HOM05D005511 ORTHO05D006616 1.1e-109 401.7 391 59.1
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 3.3e-98 363.6 667 39.6
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 2.4e-96 357.5 810 34.8
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 7.9e-92 342.4 897 32.6
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 1.6e-81 308.1 349 60.5
SEGI_09992 Sequoiadendron giganteum HOM05D005511 ORTHO05D006616 6.2e-81 306.2 368 51.4
SHI01952 Sapria himalayana HOM05D005511 ORTHO05D006616 8.2e-81 305.8 377 52.3
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 5.1e-75 286.6 225 68.9
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 2.0e-71 274.6 332 53.6
VMungo1383G0863 Vigna mungo HOM05D005511 ORTHO05D006616 6.5e-62 243.0 141 86.5
AagrBONN_evm.TU.Sc2ySwM_228.1219 Anthoceros agrestis HOM05D005511 ORTHO05D006616 4.2e-61 240.4 411 41.4
ATR0686G036 Amborella trichopoda HOM05D005511 ORTHO05D006616 8.2e-57 226.1 295 48.8
unitig_748.g7741 Utricularia gibba HOM05D005511 ORTHO05D006616 3.6e-52 210.7 284 47.5
Actinidia34689 Actinidia chinensis HOM05D005511 ORTHO05D006616 1.7e-41 175.3 215 52.6
CDE06G0583 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 2.8e-41 174.5 175 50.3
Nitab4.5_0000365g0090 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.8e-41 174.5 127 73.2
Psat6g134200 Pisum sativum HOM05D005511 ORTHO05D006616 2.8e-41 174.5 136 69.1
ATR1145G067 Amborella trichopoda HOM05D005511 ORTHO05D006616 6.5e-38 163.3 270 40.7
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 2.2e-33 148.3 160 53.8
Cre04.g222300 Chlamydomonas reinhardtii HOM05D005511 ORTHO05D006616 4.9e-25 120.6 412 27.2
PGSC0003DMG400027627 Solanum tuberosum HOM05D005511 ORTHO05D006616 2.3e-19 101.7 78 66.7
Sc03g0008960 Simmondsia chinensis HOM05D005511 ORTHO05D006616 1.5e-18 99.0 145 51.0
Actinidia02692 Actinidia chinensis HOM05D005511 ORTHO05D006616 1.4e-16 92.4 104 58.7
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 5.8e-10 70.5 93 44.1
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 1.4e-08 65.9 68 48.5
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 2.7e-07 61.6 70 44.3
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 2.7e-07 61.6 70 44.3
TAR371G0581 Trochodendron aralioides HOM05D000874 ORTHO05D003941 3.5e-07 61.2 69 44.9
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 4.6e-07 60.8 73 43.8
PRCOL_00003511 Prasinoderma coloniale HOM05D005511 ORTHO05D006616 1.3e-06 59.3 59 44.1
Ah.02g114420 Amaranthus hybridus HOM05D000251 ORTHO05D007889 1.7e-06 58.9 66 47.0
AUR62021535 Chenopodium quinoa HOM05D000874 ORTHO05D001267 1.7e-06 58.9 71 43.7
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 1.7e-06 58.9 94 40.4
Pp3c12_4860 Physcomitrium patens HOM05D000874 ORTHO05D001267 1.7e-06 58.9 103 37.9
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 2.3e-06 58.5 62 48.4
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 3.0e-06 58.2 101 37.6
TAR629G2997 Trochodendron aralioides HOM05D000874 ORTHO05D001267 3.0e-06 58.2 56 50.0
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 3.9e-06 57.8 67 44.8
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 3.9e-06 57.8 66 45.5
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 5.1e-06 57.4 95 41.1
Cc00_g03520 Coffea canephora HOM05D000874 ORTHO05D001267 5.1e-06 57.4 68 45.6
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 5.1e-06 57.4 100 37.0
PRCOL_00003186 Prasinoderma coloniale HOM05D000032 ORTHO05D006970 5.1e-06 57.4 56 46.4
Rhsim08G0139200 Rhododendron simsii HOM05D000251 ORTHO05D007889 5.1e-06 57.4 64 43.8
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 6.6e-06 57.0 72 44.4
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 6.6e-06 57.0 72 44.4
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 6.6e-06 57.0 72 44.4
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 6.6e-06 57.0 72 44.4
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 8.6e-06 56.6 82 41.5
AagrBONN_evm.TU.Sc2ySwM_344.5190 Anthoceros agrestis HOM05D000251 ORTHO05D007889 8.6e-06 56.6 68 44.1
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 8.6e-06 56.6 67 43.3
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 8.6e-06 56.6 89 40.4
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 8.6e-06 56.6 66 47.0
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 8.6e-06 56.6 67 43.3
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 8.6e-06 56.6 67 43.3


User provided reference genes

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