Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 2.4e-142 508.8 259 100.0
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 8.6e-108 394.0 258 82.2
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 5.4e-102 374.8 260 79.2
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.4e-97 360.1 256 75.8
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 1.8e-97 359.8 258 74.4
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 2.4e-97 359.4 259 76.1
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.5e-96 356.7 264 73.9
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 2.6e-96 355.9 256 73.4
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 9.9e-96 354.0 265 74.3
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 3.8e-95 352.1 257 74.3
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.8e-95 352.1 260 74.2
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 3.8e-95 352.1 263 72.6
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 4.9e-95 351.7 260 74.2
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 1.4e-94 350.1 268 73.5
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.9e-94 349.7 244 75.0
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.9e-94 349.7 244 75.0
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 4.2e-94 348.6 263 72.2
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 4.2e-94 348.6 259 73.7
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 7.1e-94 347.8 263 71.1
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 7.1e-94 347.8 262 69.8
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 1.2e-93 347.1 251 74.5
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 1.6e-93 346.7 260 72.7
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 1.6e-93 346.7 258 72.1
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 2.7e-93 345.9 258 71.7
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 4.6e-93 345.1 261 73.2
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 1.7e-92 343.2 260 70.8
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 2.3e-92 342.8 258 72.5
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 3.0e-92 342.4 261 72.0
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 8.7e-92 340.9 262 72.5
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 4.3e-91 338.6 257 71.6
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 5.6e-91 338.2 258 69.0
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 5.6e-91 338.2 262 71.0
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 9.6e-91 337.4 260 71.5
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 2.1e-90 336.3 264 69.3
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.8e-90 335.9 257 71.6
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.8e-90 335.9 263 70.0
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 2.8e-90 335.9 256 69.9
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 3.6e-90 335.5 262 69.8
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 3.6e-90 335.5 260 70.8
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 8.1e-90 334.3 233 74.2
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 1.8e-89 333.2 260 70.4
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 2.4e-89 332.8 258 70.2
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 4.0e-89 332.0 259 70.3
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 5.3e-89 331.6 261 70.1
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 6.9e-89 331.3 262 69.5
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 1.2e-88 330.5 266 66.5
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 2.6e-88 329.3 263 68.8
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 2.6e-88 329.3 262 67.6
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 4.4e-88 328.6 263 66.9
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 1.3e-87 327.0 259 69.1
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 1.7e-87 326.6 260 68.5
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 2.2e-87 326.2 258 67.4
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 3.8e-87 325.5 260 70.0
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 8.4e-87 324.3 260 70.0
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 1.1e-86 323.9 252 69.0
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 1.1e-86 323.9 197 81.7
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 1.9e-86 323.2 250 69.2
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 1.9e-86 323.2 265 68.7
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 1.9e-86 323.2 251 69.7
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 2.1e-85 319.7 260 67.3
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 2.1e-85 319.7 258 67.8
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.5e-85 318.9 263 66.9
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 4.6e-85 318.5 260 67.7
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 4.6e-85 318.5 181 86.2
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 6.0e-85 318.2 260 68.1
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 6.0e-85 318.2 249 67.9
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 7.8e-85 317.8 259 66.4
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 1.0e-84 317.4 260 68.1
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 1.0e-84 317.4 245 66.1
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 1.3e-84 317.0 261 65.1
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 8.7e-84 314.3 258 64.3
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 1.1e-83 313.9 261 66.3
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 1.5e-83 313.5 250 68.8
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 1.5e-83 313.5 182 85.7
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.5e-83 313.5 259 67.2
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 3.3e-83 312.4 250 70.0
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 5.6e-83 311.6 259 67.6
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 7.3e-83 311.2 260 66.5
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 1.6e-82 310.1 260 65.0
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.6e-82 310.1 261 65.1
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 2.1e-82 309.7 260 66.2
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 2.8e-82 309.3 250 68.0
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 4.8e-82 308.5 262 65.6
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.8e-82 308.5 260 65.0
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 4.8e-82 308.5 249 65.9
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 8.1e-82 307.8 261 67.0
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 1.1e-81 307.4 261 67.0
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 1.4e-81 307.0 260 65.4
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 1.4e-81 307.0 243 67.9
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 1.8e-81 306.6 260 65.4
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 3.1e-81 305.8 256 67.2
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 3.1e-81 305.8 262 65.6
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 3.1e-81 305.8 255 65.9
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 5.3e-81 305.1 261 64.8
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.2e-80 303.9 259 65.3
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 9.9e-80 300.8 253 65.2
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 8.4e-79 297.7 236 68.2
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 6.0e-77 291.6 194 78.4
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.8e-76 290.0 245 63.3
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 3.0e-76 289.3 260 61.5
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 8.7e-76 287.7 254 63.4
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.5e-75 287.0 213 70.0
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.9e-75 286.6 254 63.4
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 2.5e-75 286.2 249 64.7
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 3.3e-75 285.8 260 61.5
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 4.3e-75 285.4 241 66.0
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 5.6e-75 285.0 198 72.2
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 1.6e-74 283.5 251 62.2
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 2.1e-74 283.1 251 62.2
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 2.8e-74 282.7 260 64.2
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 3.7e-74 282.3 214 67.8
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 2.4e-73 279.6 260 59.6
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 5.3e-73 278.5 257 61.1
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 2.0e-72 276.6 260 61.2
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 2.0e-72 276.6 170 81.8
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 2.6e-72 276.2 260 60.0
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 3.4e-72 275.8 261 58.2
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 5.8e-72 275.0 255 60.0
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 5.8e-72 275.0 260 61.2
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 1.3e-71 273.9 259 60.2
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 1.3e-71 273.9 254 60.6
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 1.3e-71 273.9 254 60.6
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 2.2e-71 273.1 254 60.6
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 6.4e-71 271.6 186 72.0
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 6.4e-71 271.6 209 67.0
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 1.1e-70 270.8 177 74.6
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 1.4e-70 270.4 258 62.4
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 1.9e-70 270.0 258 57.4
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 7.1e-70 268.1 205 66.3
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 2.7e-69 266.2 182 69.8
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.8e-68 263.5 174 72.4
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 2.3e-68 263.1 174 71.8
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 7.4e-67 258.1 261 59.8
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.1e-66 256.5 216 63.9
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 8.2e-66 254.6 149 83.9
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 5.8e-64 248.4 176 68.2
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 3.2e-62 242.7 150 76.7
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 1.8e-57 226.9 214 62.6
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 1.1e-54 217.6 121 89.3
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 1.9e-54 216.9 131 76.3
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 5.5e-54 215.3 201 60.7
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.3e-51 205.7 121 84.3
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 2.2e-50 203.4 231 49.4
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 6.9e-49 198.4 229 51.5
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 1.3e-47 194.1 257 47.5
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 2.5e-46 189.9 197 59.9
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 3.2e-46 189.5 247 49.4
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 3.0e-44 183.0 257 46.7
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 5.1e-44 182.2 180 61.1
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 6.7e-44 181.8 227 47.6
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 6.7e-44 181.8 147 70.1
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 2.0e-43 180.3 261 44.8
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 2.0e-43 180.3 126 73.8
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 1.0e-31 141.4 75 88.0
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 3.8e-31 139.4 95 70.5
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 6.8e-28 128.6 103 62.1
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 4.8e-26 122.5 76 76.3
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 6.3e-26 122.1 76 75.0
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 3.5e-24 116.3 125 52.8
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 7.7e-24 115.2 92 70.7
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 3.8e-23 112.8 112 56.2
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 3.6e-21 106.3 116 53.4
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 1.0e-15 88.2 217 39.2
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 3.3e-14 83.2 159 39.0
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 4.0e-12 76.3 133 39.8
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 6.8e-12 75.5 50 76.0
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 1.7e-10 70.9 153 31.4
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 4.1e-09 66.2 151 33.1
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 3.5e-08 63.2 54 59.3
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 5.9e-08 62.4 91 40.7
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 1.7e-07 60.8 54 51.9
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 7.3e-06 55.5 96 38.5


User provided reference genes

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