Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p029100 Quercus lobata HOM05D001937 ORTHO05D003828 9.0e-103 377.1 214 100.0
QL03p022329 Quercus lobata HOM05D001937 ORTHO05D003828 3.4e-102 375.2 214 98.6
QL03p072736 Quercus lobata HOM05D001937 ORTHO05D003828 1.9e-100 369.4 214 96.3
QL03p060281 Quercus lobata HOM05D001937 ORTHO05D003828 3.2e-100 368.6 214 97.7
QL11p053735 Quercus lobata HOM05D001937 ORTHO05D003828 5.5e-100 367.9 214 96.7
CiPaw.05G030600 Carya illinoinensis HOM05D001937 ORTHO05D003828 3.4e-86 322.0 214 79.0
Haze_10549 Corylus avellana HOM05D001937 ORTHO05D007024 3.0e-74 282.3 214 77.1
QL04p008924 Quercus lobata HOM05D001937 ORTHO05D003828 2.6e-73 279.3 214 80.4
QL12p036527 Quercus lobata HOM05D001937 ORTHO05D003828 2.6e-73 279.3 214 80.4
Cfa005699 Carpinus fangiana HOM05D001937 ORTHO05D007024 4.4e-73 278.5 214 77.1
QL12p030812 Quercus lobata HOM05D001937 ORTHO05D003828 4.5e-70 268.5 168 91.7
GSVIVG01020528001 Vitis vinifera HOM05D001937 ORTHO05D003828 1.7e-69 266.5 222 73.4
TAR374G1188 Trochodendron aralioides HOM05D001937 ORTHO05D003828 5.5e-68 261.5 223 71.3
Manes.07G036600 Manihot esculenta HOM05D001937 ORTHO05D003828 2.1e-67 259.6 215 72.6
ClCG09G008530 Citrullus lanatus HOM05D001937 ORTHO05D003828 1.0e-66 257.3 215 71.2
FAN28G0964 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.4e-66 256.9 216 73.6
QL02p062665 Quercus lobata HOM05D001937 ORTHO05D003828 5.2e-66 255.0 208 77.4
QL06p020738 Quercus lobata HOM05D001937 ORTHO05D003828 5.2e-66 255.0 208 77.4
MD04G1047300 Malus domestica HOM05D001937 ORTHO05D003828 6.7e-66 254.6 217 72.4
Prupe.1G559000 Prunus persica HOM05D001937 ORTHO05D003828 1.5e-65 253.4 211 69.2
Sed0011905 Sechium edule HOM05D001937 ORTHO05D003828 1.3e-64 250.4 215 69.3
RcHm_v2.0_Chr3g0492481 Rosa chinensis HOM05D001937 ORTHO05D003828 1.7e-64 250.0 217 70.5
Dinv15990 Davidia involucrata HOM05D001937 ORTHO05D003828 2.2e-64 249.6 222 69.4
FAN23G0892 Fragaria x ananassa HOM05D001937 ORTHO05D003828 2.2e-64 249.6 224 66.5
MELO3C021095.2 Cucumis melo HOM05D001937 ORTHO05D003828 2.8e-64 249.2 215 69.3
CsaV3_7G026510 Cucumis sativus L. HOM05D001937 ORTHO05D003828 1.4e-63 246.9 215 69.8
Nn1g09835 Nelumbo nucifera HOM05D001937 ORTHO05D003828 7.0e-63 244.6 217 68.7
VMungo1215G1229 Vigna mungo HOM05D001937 ORTHO05D003828 7.0e-63 244.6 212 71.2
Nn2g11723 Nelumbo nucifera HOM05D001937 ORTHO05D003828 1.6e-62 243.4 217 71.0
Glyma.09G215000 Glycine max HOM05D001937 ORTHO05D003828 2.0e-62 243.0 212 65.6
Phvul.002G127400 Phaseolus vulgaris HOM05D001937 ORTHO05D003828 1.0e-61 240.7 212 70.3
Rhsim05G0102300 Rhododendron simsii HOM05D001937 ORTHO05D003828 1.3e-61 240.4 223 68.6
Lj2g0019889 Lotus japonicus HOM05D001937 ORTHO05D003828 2.2e-61 239.6 212 64.6
vmacro19954 Vaccinium macrocarpon HOM05D001937 ORTHO05D003828 2.9e-61 239.2 223 68.6
FvH4_1g29900 Fragaria vesca HOM05D001937 ORTHO05D003828 3.8e-61 238.8 216 70.8
CANSAT11G1347 Cannabis sativa HOM05D001937 ORTHO05D003828 1.5e-60 236.9 216 69.4
FAN26G2897 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.9e-60 236.5 224 64.7
Glyma.04G123500 Glycine max HOM05D001937 ORTHO05D003828 5.5e-60 235.0 212 69.3
Dinv24157 Davidia involucrata HOM05D001937 ORTHO05D003828 7.2e-60 234.6 216 69.4
FAN19G2543 Fragaria x ananassa HOM05D001937 ORTHO05D003828 6.1e-59 231.5 216 64.8
COL.COLO4_05351 Corchorus olitorius HOM05D001937 ORTHO05D003828 8.0e-59 231.1 224 62.5
Cc02_g20980 Coffea canephora HOM05D001937 ORTHO05D003828 1.4e-58 230.3 220 64.5
Sabra07G0092600 Salix brachista HOM05D001937 ORTHO05D003828 2.3e-58 229.6 211 65.9
Ca_25089_v3 Cicer arietinum L. HOM05D001937 ORTHO05D003828 5.2e-58 228.4 216 67.6
Potri.017G047600 Populus trichocarpa HOM05D001937 ORTHO05D003828 4.4e-57 225.3 208 70.7
PSO782G5216 Papaver somniferum HOM05D001937 ORTHO05D003828 5.7e-57 224.9 210 62.4
Psat2g142560 Pisum sativum HOM05D001937 ORTHO05D003828 5.7e-57 224.9 217 61.8
PSO063G3818 Papaver somniferum HOM05D001937 ORTHO05D003828 9.8e-57 224.2 210 62.4
TWI23G0701 Tripterygium wilfordii HOM05D001937 ORTHO05D003828 1.3e-56 223.8 223 61.0
Ciclev10004125m.g Citrus clementina HOM05D001937 ORTHO05D003828 2.8e-56 222.6 221 63.8
Nitab4.5_0005574g0040 Nicotiana tabacum HOM05D001937 ORTHO05D003828 2.8e-56 222.6 212 65.1
Aqoxy4G02410 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 3.7e-56 222.2 214 62.1
Potri.007G113300 Populus trichocarpa HOM05D001937 ORTHO05D003828 3.7e-56 222.2 211 66.4
Medtr5g026660 Medicago truncatula HOM05D001937 ORTHO05D003828 8.3e-56 221.1 216 67.1
Duzib212G0078 Durio zibethinus HOM05D001937 ORTHO05D003828 1.1e-55 220.7 223 64.6
Nitab4.5_0000244g0410 Nicotiana tabacum HOM05D001937 ORTHO05D003828 2.4e-55 219.5 212 62.3
ATR1120G087 Amborella trichopoda HOM05D001937 ORTHO05D003828 1.6e-54 216.9 224 58.0
Gohir.A10G142200 Gossypium hirsutum HOM05D001937 ORTHO05D003828 2.0e-54 216.5 224 65.2
TWI14G0424 Tripterygium wilfordii HOM05D001937 ORTHO05D003828 2.0e-54 216.5 223 64.1
Sabra17G0032100 Salix brachista HOM05D001937 ORTHO05D003828 4.5e-54 215.3 211 64.5
DCAR_008727 Daucus carota HOM05D001937 ORTHO05D003828 5.9e-54 214.9 223 64.1
Solyc07g006820.4 Solanum lycopersicum HOM05D001937 ORTHO05D003828 1.3e-53 213.8 206 62.1
Sopen07g002920 Solanum pennellii HOM05D001937 ORTHO05D003828 1.3e-53 213.8 206 62.1
Gohir.D10G124300 Gossypium hirsutum HOM05D001937 ORTHO05D003828 1.7e-53 213.4 224 64.7
Eucgr.I02627 Eucalyptus grandis HOM05D001937 ORTHO05D003828 3.8e-53 212.2 216 58.3
Gorai.011G137400 Gossypium raimondii HOM05D001937 ORTHO05D003828 1.1e-52 210.7 224 64.3
EL10Ac3g06089 Beta vulgaris HOM05D001937 ORTHO05D003828 1.9e-52 209.9 217 57.6
Lalb_Chr09g0325221 Lupinus albus HOM05D001937 ORTHO05D003828 1.9e-52 209.9 189 69.8
PGR042G3669 Punica granatum HOM05D001937 ORTHO05D003828 3.2e-52 209.1 214 56.5
Sc25g0001620 Simmondsia chinensis HOM05D001937 ORTHO05D003828 5.5e-52 208.4 222 57.2
Migut.B00560 Erythranthe guttata HOM05D001937 ORTHO05D003828 7.2e-52 208.0 221 57.9
Thecc.04G168700 Theobroma cacao HOM05D001937 ORTHO05D003828 7.2e-52 208.0 224 63.4
Atru.chr3.3791 Acer truncatum HOM05D001937 ORTHO05D003828 1.0e-50 204.1 139 82.0
CSS0032005 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D003828 5.2e-50 201.8 223 61.4
CSS0037154 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D003828 5.2e-50 201.8 223 61.4
Actinidia28033 Actinidia chinensis HOM05D001937 ORTHO05D003828 6.8e-50 201.4 216 56.5
Sp1g28210 Schrenkiella parvula HOM05D001937 ORTHO05D003828 4.4e-49 198.7 222 59.0
Hund12383 Selenicereus undatus HOM05D001937 ORTHO05D003828 7.5e-49 198.0 215 57.2
HanXRQChr06g0170531 Helianthus annuus HOM05D001937 ORTHO05D003828 2.2e-48 196.4 205 58.0
HanXRQChr05g0162901 Helianthus annuus HOM05D001937 ORTHO05D003828 2.8e-48 196.1 205 58.0
PSO675G8698 Papaver somniferum HOM05D001937 ORTHO05D003828 1.4e-47 193.7 219 55.3
Thhalv10006532m.g Eutrema salsugineum HOM05D001937 ORTHO05D003828 2.4e-47 193.0 222 58.1
A08p09140 Brassica napus HOM05D001937 ORTHO05D003828 3.1e-47 192.6 224 58.9
BraA08t32916Z Brassica rapa HOM05D001937 ORTHO05D003828 3.1e-47 192.6 224 58.9
BcaB04g17964 Brassica carinata HOM05D001937 ORTHO05D003828 4.1e-47 192.2 219 58.9
CDE08G1500 Ceratophyllum demersum HOM05D001937 ORTHO05D003828 4.1e-47 192.2 223 54.7
BolC8t47960H Brassica oleracea HOM05D001937 ORTHO05D003828 5.4e-47 191.8 224 58.5
Lsat_1_v5_gn_6_102941 Lactuca sativa HOM05D001937 ORTHO05D003828 5.4e-47 191.8 223 54.3
AUR62023793 Chenopodium quinoa HOM05D001937 ORTHO05D003828 7.0e-47 191.4 209 56.9
ECA246G2336 Erigeron canadensis HOM05D001937 ORTHO05D003828 9.2e-47 191.0 225 59.1
BcaC07g37602 Brassica carinata HOM05D001937 ORTHO05D003828 1.2e-46 190.7 224 58.0
unitig_46.g18832 Utricularia gibba HOM05D001937 ORTHO05D003828 1.2e-46 190.7 202 56.4
Carub.0001s3108 Capsella rubella HOM05D001937 ORTHO05D003828 1.6e-46 190.3 222 58.6
AL1G47030 Arabidopsis lyrata HOM05D001937 ORTHO05D003828 4.5e-46 188.7 221 57.9
AT1G32750 Arabidopsis thaliana HOM05D001937 ORTHO05D003828 7.7e-46 188.0 220 57.7
THA.LOC104811101 Tarenaya hassleriana HOM05D001937 ORTHO05D003828 3.8e-45 185.7 138 76.1
Lalb_Chr05g0215381 Lupinus albus HOM05D001937 ORTHO05D003828 5.0e-45 185.3 216 59.3
Ciclev10004140m.g Citrus clementina HOM05D001937 ORTHO05D003828 1.1e-44 184.1 219 57.5
TPR.G17275 Trifolium pratense HOM05D001937 ORTHO05D003828 9.5e-44 181.0 216 59.3
SGA_v2.0_scaffold83G26356 Striga asiatica HOM05D001937 ORTHO05D003828 3.6e-43 179.1 235 50.6
CAN.G584.7 Capsicum annuum HOM05D001937 ORTHO05D003828 4.7e-43 178.7 214 54.7
Atru.chr8.1124 Acer truncatum HOM05D001937 ORTHO05D003828 3.0e-42 176.0 222 59.0
Aqoxy3G01594 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 2.0e-41 173.3 199 53.8
arahy.Tifrunner.gnm1.ann1.4559ZH Arachis hypogaea HOM05D001937 ORTHO05D003828 3.4e-41 172.6 138 72.5
arahy.Tifrunner.gnm1.ann1.9SH8TS Arachis hypogaea HOM05D001937 ORTHO05D003828 3.4e-41 172.6 138 72.5
Cpa.g.sc177.20 Carica papaya HOM05D001937 ORTHO05D003828 4.4e-41 172.2 138 72.5
SEGI_20322 Sequoiadendron giganteum HOM05D001937 ORTHO05D003828 2.9e-40 169.5 138 69.6
Lj2C174G11 Lonicera japonica HOM05D001937 ORTHO05D003828 3.7e-40 169.1 222 50.5
Os06g0645800 Oryza sativa ssp. japonica HOM05D001937 ORTHO05D003828 4.9e-40 168.7 210 49.0
Aa31LG2G13230 Aethionema arabicum HOM05D001937 ORTHO05D003828 6.4e-40 168.3 222 54.5
AL3G32430 Arabidopsis lyrata HOM05D001937 ORTHO05D003828 8.3e-40 167.9 137 68.6
CARHR032130 Cardamine hirsuta HOM05D001937 ORTHO05D003828 1.4e-39 167.2 222 54.1
AUR62002404 Chenopodium quinoa HOM05D001937 ORTHO05D003828 1.8e-39 166.8 209 51.7
Oeu029676.1 Olea europaea HOM05D001937 ORTHO05D003828 1.6e-38 163.7 270 44.1
Zm00001eb386900 Zea mays HOM05D001937 ORTHO05D003828 1.6e-38 163.7 216 49.1
BolC1t04467H Brassica oleracea HOM05D001937 ORTHO05D003828 1.1e-36 157.5 137 67.2
BcaC09g48870 Brassica carinata HOM05D001937 ORTHO05D003828 1.9e-36 156.8 137 67.2
C01p44990 Brassica napus HOM05D001937 ORTHO05D003828 1.9e-36 156.8 137 67.2
A01p35430 Brassica napus HOM05D001937 ORTHO05D003828 2.5e-36 156.4 137 67.2
BraA01t03625Z Brassica rapa HOM05D001937 ORTHO05D003828 2.5e-36 156.4 137 67.2
HPP92_017202 Vanilla planifolia HOM05D001937 ORTHO05D003828 2.1e-35 153.3 202 48.5
Pp3c14_1870 Physcomitrium patens HOM05D001937 ORTHO05D003828 2.8e-35 152.9 221 49.8
RcHm_v2.0_Chr5g0013481 Rosa chinensis HOM05D001937 ORTHO05D003828 8.9e-34 147.9 192 54.2
Peaxi162Scf00610g00377 Petunia axillaris HOM05D001937 ORTHO05D003828 1.2e-33 147.5 220 47.3
Sp3g17140 Schrenkiella parvula HOM05D001937 ORTHO05D003828 1.2e-33 147.5 173 53.8
AT3G19040 Arabidopsis thaliana HOM05D001937 ORTHO05D003828 1.5e-33 147.1 137 61.3
AagrBONN_evm.TU.Sc2ySwM_117.3403 Anthoceros agrestis HOM05D001937 ORTHO05D003828 9.2e-31 137.9 223 43.0
Mapoly0010s0177 Marchantia polymorpha HOM05D001937 ORTHO05D003828 2.7e-30 136.3 219 47.0
BcaB04g20722 Brassica carinata HOM05D001937 ORTHO05D003828 3.9e-29 132.5 136 61.0
Pp3c10_350 Physcomitrium patens HOM05D001937 ORTHO05D003828 6.8e-26 121.7 218 46.3
FvH4_3g05980 Fragaria vesca HOM05D001937 ORTHO05D003828 8.9e-26 121.3 238 41.6
FAN25G3599 Fragaria x ananassa HOM05D001937 ORTHO05D003828 2.6e-25 119.8 246 41.1
FAN11G3092 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.3e-24 117.5 238 41.2
FAN21G3055 Fragaria x ananassa HOM05D001937 ORTHO05D003828 4.9e-24 115.5 251 42.2
DCAR_019148 Daucus carota HOM05D001937 ORTHO05D003828 2.3e-18 96.7 110 56.4
Mapoly0048s0004 Marchantia polymorpha HOM05D001937 ORTHO05D003828 7.6e-17 91.7 187 38.0
Prupe.1G009900 Prunus persica HOM05D001937 ORTHO05D003828 4.1e-15 85.9 179 42.5
PSO384G4225 Papaver somniferum HOM05D003118 ORTHO05D003618 3.3e-12 76.3 143 39.9
CARHR094480 Cardamine hirsuta HOM05D001937 ORTHO05D003828 1.2e-11 74.3 46 80.4
CBR_g2821 Chara braunii HOM05D001937 ORTHO05D003828 6.2e-11 72.0 115 42.6
Lsat_1_v5_gn_4_144260 Lactuca sativa HOM05D001937 ORTHO05D003828 8.1e-11 71.6 67 65.7
PSO266G0025 Papaver somniferum HOM05D048025 ORTHO05D003828 5.2e-10 68.9 130 42.3
Aqoxy3G01486 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 7.1e-07 58.5 47 63.8


User provided reference genes

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