Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p041826 Quercus lobata HOM05D000104 ORTHO05D006071 5.4e-125 451.1 234 100.0
QL10p041777 Quercus lobata HOM05D000104 ORTHO05D006071 7.8e-84 314.3 224 74.6
CiPaw.04G080100 Carya illinoinensis HOM05D000104 ORTHO05D006071 9.6e-74 280.8 225 67.1
Cfa002182 Carpinus fangiana HOM05D000104 ORTHO05D006071 1.4e-72 276.9 224 67.0
CANSAT01G0184 Cannabis sativa HOM05D000104 ORTHO05D006071 1.3e-65 253.8 224 59.4
Prupe.4G275700 Prunus persica HOM05D000104 ORTHO05D006071 3.7e-65 252.3 224 59.8
TAR628G1730 Trochodendron aralioides HOM05D000104 ORTHO05D006071 1.1e-64 250.8 223 60.1
GSVIVG01026450001 Vitis vinifera HOM05D000104 ORTHO05D006071 5.8e-63 245.0 224 59.8
TWI31G0382 Tripterygium wilfordii HOM05D000104 ORTHO05D006071 1.7e-62 243.4 226 58.8
CSS0012619 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006071 3.8e-62 242.3 224 59.4
CSS0041675 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006071 6.5e-62 241.5 224 59.4
Potri.007G102800 Populus trichocarpa HOM05D000104 ORTHO05D006071 6.5e-62 241.5 225 59.6
Sabra07G0084400 Salix brachista HOM05D000104 ORTHO05D006071 6.5e-62 241.5 225 60.0
Potri.005G066600 Populus trichocarpa HOM05D000104 ORTHO05D006071 1.1e-61 240.7 225 59.1
Ciclev10000096m.g Citrus clementina HOM05D000104 ORTHO05D006071 1.9e-61 240.0 224 58.9
Dinv08886 Davidia involucrata HOM05D000104 ORTHO05D006071 1.6e-60 236.9 224 58.9
Dinv17300 Davidia involucrata HOM05D000104 ORTHO05D006071 1.6e-60 236.9 224 58.9
PGR102G2777 Punica granatum HOM05D000104 ORTHO05D006071 1.6e-60 236.9 227 59.0
Manes.13G085000 Manihot esculenta HOM05D000104 ORTHO05D006071 4.6e-60 235.3 224 57.1
Eucgr.H05148 Eucalyptus grandis HOM05D000104 ORTHO05D006071 6.0e-60 235.0 224 56.2
vmacro23048 Vaccinium macrocarpon HOM05D000104 ORTHO05D006071 2.3e-59 233.0 224 56.7
vmacro23146 Vaccinium macrocarpon HOM05D000104 ORTHO05D006071 2.3e-59 233.0 224 56.7
MD15G1135700 Malus domestica HOM05D000104 ORTHO05D006071 3.0e-59 232.6 227 59.0
Aqoxy6G00301 Aquilegia oxysepala HOM05D000104 ORTHO05D006071 6.7e-59 231.5 225 55.6
Cpa.g.sc1639.3 Carica papaya HOM05D000104 ORTHO05D006071 2.5e-58 229.6 224 57.6
Atru.chr4.943 Acer truncatum HOM05D000104 ORTHO05D006071 3.3e-58 229.2 225 56.0
Lalb_Chr12g0203051 Lupinus albus HOM05D000104 ORTHO05D006071 5.7e-58 228.4 226 55.3
Sabra05G0054900 Salix brachista HOM05D000104 ORTHO05D006071 5.7e-58 228.4 224 56.7
Gorai.006G005000 Gossypium raimondii HOM05D000104 ORTHO05D006071 7.4e-58 228.0 225 56.4
Nn1g08948 Nelumbo nucifera HOM05D000104 ORTHO05D006071 7.4e-58 228.0 224 53.6
FAN26G2158 Fragaria x ananassa HOM05D000104 ORTHO05D006071 2.8e-57 226.1 227 58.6
Hma1.2p1_0512F.1_g169270 Hydrangea macrophylla HOM05D000104 ORTHO05D006071 2.8e-57 226.1 222 56.3
arahy.Tifrunner.gnm1.ann1.H21J0D Arachis hypogaea HOM05D000104 ORTHO05D006071 6.3e-57 224.9 224 53.1
COL.COLO4_35752 Corchorus olitorius HOM05D000104 ORTHO05D006071 8.2e-57 224.6 219 54.8
Nn5g28449 Nelumbo nucifera HOM05D000104 ORTHO05D006071 1.1e-56 224.2 225 54.2
FvH4_1g24690 Fragaria vesca HOM05D000104 ORTHO05D006071 1.8e-56 223.4 227 57.7
FAN19G1002 Fragaria x ananassa HOM05D000104 ORTHO05D006071 1.8e-56 223.4 227 57.7
RcHm_v2.0_Chr2g0122191 Rosa chinensis HOM05D000104 ORTHO05D006071 3.1e-56 222.6 228 58.3
arahy.Tifrunner.gnm1.ann1.DAD8TC Arachis hypogaea HOM05D000104 ORTHO05D006071 2.6e-55 219.5 224 52.2
Ca_17624_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006071 4.5e-55 218.8 225 54.7
Phvul.002G274300 Phaseolus vulgaris HOM05D000104 ORTHO05D006071 5.9e-55 218.4 224 54.0
Actinidia20024 Actinidia chinensis HOM05D000104 ORTHO05D006071 7.6e-55 218.0 224 52.7
Actinidia14083 Actinidia chinensis HOM05D000104 ORTHO05D006071 5.0e-54 215.3 231 51.5
Psat7g045440 Pisum sativum HOM05D000104 ORTHO05D006071 5.0e-54 215.3 224 53.1
Thecc.01G133200 Theobroma cacao HOM05D000104 ORTHO05D006071 5.0e-54 215.3 185 61.1
ECA240G1465 Erigeron canadensis HOM05D000104 ORTHO05D006071 8.5e-54 214.5 224 54.5
TPR.G37376 Trifolium pratense HOM05D000104 ORTHO05D006071 1.1e-53 214.2 225 53.8
Gohir.A09G004100 Gossypium hirsutum HOM05D000104 ORTHO05D006071 1.4e-53 213.8 225 54.2
Gohir.D09G003600 Gossypium hirsutum HOM05D000104 ORTHO05D006071 1.4e-53 213.8 225 54.2
DCAR_020007 Daucus carota HOM05D000104 ORTHO05D006071 1.9e-53 213.4 224 51.8
THA.LOC104800148 Tarenaya hassleriana HOM05D000104 ORTHO05D006071 2.5e-53 213.0 226 53.5
MBI03_g13493_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D006071 4.2e-53 212.2 227 50.7
Peaxi162Scf00087g00224 Petunia axillaris HOM05D000104 ORTHO05D006071 4.2e-53 212.2 225 53.8
MELO3C024599.2 Cucumis melo HOM05D000104 ORTHO05D006071 1.2e-52 210.7 224 52.7
Lj4g0008367 Lotus japonicus HOM05D000104 ORTHO05D006071 1.2e-52 210.7 224 52.2
Hund21803 Selenicereus undatus HOM05D000104 ORTHO05D006071 2.1e-52 209.9 224 53.1
VMungo0251G3768 Vigna mungo HOM05D000104 ORTHO05D006071 2.7e-52 209.5 225 53.3
Sed0020852 Sechium edule HOM05D000104 ORTHO05D006071 4.6e-52 208.8 227 52.9
CsaV3_6G041230 Cucumis sativus L. HOM05D000104 ORTHO05D006071 6.1e-52 208.4 224 51.3
Lsat_1_v5_gn_3_126201 Lactuca sativa HOM05D000104 ORTHO05D006071 1.3e-51 207.2 225 51.1
EL10Ac4g09611 Beta vulgaris HOM05D000104 ORTHO05D006071 2.3e-51 206.5 224 53.6
ClCG01G015120 Citrullus lanatus HOM05D000104 ORTHO05D006071 2.3e-51 206.5 219 52.5
PSO170G5372 Papaver somniferum HOM05D000104 ORTHO05D006071 5.1e-51 205.3 225 52.0
BcaB02g09760 Brassica carinata HOM05D000104 ORTHO05D006071 6.7e-51 204.9 228 49.6
CAN.G410.42 Capsicum annuum HOM05D000104 ORTHO05D006071 8.7e-51 204.5 225 50.7
Medtr8g094070 Medicago truncatula HOM05D000104 ORTHO05D006071 1.9e-50 203.4 224 50.9
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 1.9e-50 203.4 202 54.0
MSTRG.16996 Avicennia marina HOM05D000104 ORTHO05D006071 3.3e-50 202.6 222 51.4
PSO528G0238 Papaver somniferum HOM05D000104 ORTHO05D006071 3.3e-50 202.6 225 51.1
SalBow5G2719 Salvia bowleyana HOM05D000104 ORTHO05D006071 5.7e-50 201.8 222 52.3
Aa31LG1G17950 Aethionema arabicum HOM05D000104 ORTHO05D006071 7.4e-50 201.4 228 49.6
AL8G41210 Arabidopsis lyrata HOM05D000104 ORTHO05D006071 9.7e-50 201.1 226 50.4
HanXRQChr13g0423701 Helianthus annuus HOM05D000104 ORTHO05D006071 9.7e-50 201.1 224 50.4
AUR62006852 Chenopodium quinoa HOM05D000104 ORTHO05D006071 1.3e-49 200.7 224 51.3
A06p30560 Brassica napus HOM05D000104 ORTHO05D006071 2.8e-49 199.5 227 50.2
BraA06t26005Z Brassica rapa HOM05D000104 ORTHO05D006071 2.8e-49 199.5 227 50.2
AT5G63950 Arabidopsis thaliana HOM05D000104 ORTHO05D006071 3.7e-49 199.1 226 49.1
BolC3t18499H Brassica oleracea HOM05D000104 ORTHO05D006071 4.8e-49 198.7 230 49.6
Carub.0008s2473 Capsella rubella HOM05D000104 ORTHO05D006071 4.8e-49 198.7 202 54.0
Thhalv10003558m.g Eutrema salsugineum HOM05D000104 ORTHO05D006071 6.3e-49 198.4 226 49.1
BcaC01g02651 Brassica carinata HOM05D000104 ORTHO05D006071 8.2e-49 198.0 230 49.6
C03p62400 Brassica napus HOM05D000104 ORTHO05D006071 1.4e-48 197.2 230 49.6
Migut.B01201 Erythranthe guttata HOM05D000104 ORTHO05D006071 1.4e-48 197.2 222 50.9
Sp2g27010 Schrenkiella parvula HOM05D000104 ORTHO05D006071 1.8e-48 196.8 229 49.8
Oeu009636.2 Olea europaea HOM05D000104 ORTHO05D006071 2.4e-48 196.4 252 48.4
AUR62000507 Chenopodium quinoa HOM05D000104 ORTHO05D006071 4.1e-48 195.7 219 52.1
Sc09g0002280 Simmondsia chinensis HOM05D000104 ORTHO05D006071 5.3e-48 195.3 224 50.4
Solyc01g068280.3 Solanum lycopersicum HOM05D000104 ORTHO05D006071 6.9e-48 194.9 225 48.4
CARHR277860 Cardamine hirsuta HOM05D000104 ORTHO05D006071 2.6e-47 193.0 219 49.3
Sopen01g030220 Solanum pennellii HOM05D000104 ORTHO05D006071 2.6e-47 193.0 225 48.4
Nitab4.5_0000316g0170 Nicotiana tabacum HOM05D000104 ORTHO05D006071 6.5e-46 188.3 224 48.7
Cc02_g29430 Coffea canephora HOM05D000104 ORTHO05D006071 3.2e-45 186.0 225 50.7
Haze_25323 Corylus avellana HOM05D000104 ORTHO05D022468 5.5e-45 185.3 165 63.0
Glyma.05G193900 Glycine max HOM05D000104 ORTHO05D006071 7.2e-45 184.9 187 52.9
Glyma.08G001900 Glycine max HOM05D000104 ORTHO05D006071 2.7e-44 183.0 224 46.9
SGA_v2.0_scaffold212G42200 Striga asiatica HOM05D000104 ORTHO05D006071 1.0e-43 181.0 221 45.7
CDE04G0721 Ceratophyllum demersum HOM05D000104 ORTHO05D006071 3.0e-43 179.5 224 48.2
Os04g0692750 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006071 3.3e-42 176.0 229 46.3
Ah.04g157970 Amaranthus hybridus HOM05D000104 ORTHO05D006071 7.4e-42 174.9 213 47.4
unitig_26.g9608 Utricularia gibba HOM05D000104 ORTHO05D006071 1.3e-41 174.1 203 50.7
SEGI_24909 Sequoiadendron giganteum HOM05D000104 ORTHO05D006071 9.1e-40 167.9 206 46.6
CDE12G0860 Ceratophyllum demersum HOM05D000104 ORTHO05D006071 1.2e-39 167.5 226 45.6
C02p57520 Brassica napus HOM05D000104 ORTHO05D006071 6.5e-38 161.8 229 43.7
BolC4t23458H Brassica oleracea HOM05D000104 ORTHO05D006071 3.2e-37 159.5 226 44.2
Zm00001eb076670 Zea mays HOM05D000104 ORTHO05D006071 4.2e-37 159.1 225 41.3
C04p19250 Brassica napus HOM05D000104 ORTHO05D006071 7.2e-37 158.3 229 43.2
vmacro08728 Vaccinium macrocarpon HOM05D000104 ORTHO05D006071 4.7e-36 155.6 96 75.0
ATR0188G008 Amborella trichopoda HOM05D000104 ORTHO05D006071 1.1e-34 151.0 213 40.4
Eucgr.C01537 Eucalyptus grandis HOM05D000104 ORTHO05D006071 1.7e-33 147.1 100 71.0
SHI36065 Sapria himalayana HOM05D000104 ORTHO05D006071 1.7e-33 147.1 103 68.0
Eucgr.C01558 Eucalyptus grandis HOM05D000104 ORTHO05D006071 1.8e-32 143.7 96 71.9
Lsat_1_v5_gn_3_126241 Lactuca sativa HOM05D000104 ORTHO05D006071 9.1e-32 141.4 99 66.7
Nitab4.5_0006307g0040 Nicotiana tabacum HOM05D000104 ORTHO05D006071 5.9e-31 138.7 101 66.3
BcaC01g02649 Brassica carinata HOM05D000104 ORTHO05D006071 1.3e-30 137.5 203 41.4
SMO146G0288 Selaginella moellendorffii HOM05D000104 ORTHO05D006071 1.9e-29 133.7 224 37.5
FAN28G2450 Fragaria x ananassa HOM05D000104 ORTHO05D006071 1.8e-27 127.1 227 38.3
Lj4g0017230 Lotus japonicus HOM05D000104 ORTHO05D006071 8.8e-27 124.8 91 60.4
MD15G1135300 Malus domestica HOM05D000104 ORTHO05D022468 7.0e-24 115.2 197 40.1
Pp3c14_20620 Physcomitrium patens HOM05D000104 ORTHO05D006071 7.0e-24 115.2 207 37.7
Mapoly0209s0008 Marchantia polymorpha HOM05D000104 ORTHO05D006071 5.9e-23 112.1 220 35.0
Pp3c2_11030 Physcomitrium patens HOM05D000104 ORTHO05D006071 7.7e-23 111.7 213 34.7
AagrBONN_evm.TU.Sc2ySwM_340.353 Anthoceros agrestis HOM05D000104 ORTHO05D006071 4.7e-20 102.4 92 53.3
Ca_21740_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006071 1.4e-19 100.9 163 40.5
SpUn0382_0010 Schrenkiella parvula HOM05D000104 ORTHO05D006071 7.5e-18 95.1 118 44.9
Os04g0692700 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006071 4.8e-17 92.4 94 50.0
Actinidia06574 Actinidia chinensis HOM05D000104 ORTHO05D006071 7.0e-16 88.6 224 32.6
vmacro08729 Vaccinium macrocarpon HOM05D000104 ORTHO05D022468 1.4e-11 74.3 96 45.8
Cre03.g183350 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D006071 2.3e-11 73.6 101 39.6
CBR_g37246 Chara braunii HOM05D000104 ORTHO05D006071 3.0e-11 73.2 87 46.0
MBI12_g15165_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D022468 3.1e-08 63.2 145 32.4
MBI16_g39099_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D022468 9.2e-08 61.6 89 41.6
Lsat_1_v5_gn_9_18861 Lactuca sativa HOM05D000104 ORTHO05D006071 1.2e-07 61.2 142 31.7
BcaC03g17740 Brassica carinata HOM05D001379 ORTHO05D001277 1.6e-07 60.8 63 44.4
MCO07G731 Micromonas commoda HOM05D000104 ORTHO05D006071 7.8e-07 58.5 224 26.8


User provided reference genes

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