Gene: Sopen01g030220

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g030220
  • Transcript Identifier Sopen01g030220.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 87378829-87392664 : negative

Gene Family Information

  • ID HOM05D000104
  • #Genes/#Species 3097/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g030220.1

Descriptions

  • Description chromatin remodeling 24 (CHR24) | FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding | INVOLVED IN: response to cadmium ion | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 7 growth stages | CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain , SNF2-related | BEST Arabidopsis thaliana protein match is: chromatin remodeling 8
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045951
ISO
PLAZA Integrative Orthologypositive regulation of mitotic recombination AT5G63950
GO:2000014
ISO
PLAZA Integrative Orthologyregulation of endosperm development Os04g0692750
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT5G63950
GO:0010965
ISO
PLAZA Integrative Orthologyregulation of mitotic sister chromatid separation Os04g0692750

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
InterProATP binding
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm Os04g0692750
GO:0005694
ISO
PLAZA Integrative Orthologychromosome Os04g0692750

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038718 SNF2-like, N-terminal domain superfamily
IPR001650 Helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR000330 SNF2, N-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
12.4.8.2.3 Chromatin organisation.nucleosome remodeling.other chromatin remodeling activities.SSO1653-like group.chromatin remodeling factor (ERCC6)