Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 7.6e-158 560.5 285 100.0
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 9.5e-116 420.6 242 88.0
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 7.3e-108 394.4 240 81.7
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 9.5e-108 394.0 240 81.7
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 3.6e-107 392.1 240 80.8
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 8.0e-107 391.0 239 82.4
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 1.4e-106 390.2 240 80.8
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 1.8e-106 389.8 241 80.9
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 6.8e-106 387.9 243 79.4
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 8.9e-106 387.5 239 79.9
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 7.5e-105 384.4 237 81.4
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 9.8e-105 384.0 240 79.6
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 1.3e-104 383.6 240 79.6
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.7e-104 383.3 240 80.0
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 2.2e-104 382.9 240 79.6
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 2.2e-104 382.9 240 80.8
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 4.9e-104 381.7 240 79.2
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 4.9e-104 381.7 240 78.3
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 1.1e-103 380.6 240 77.9
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.1e-103 380.6 240 79.2
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 1.1e-103 380.6 243 78.6
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 2.4e-103 379.4 240 78.8
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 3.2e-103 379.0 233 82.4
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 5.4e-103 378.3 238 80.3
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 5.4e-103 378.3 240 79.6
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 1.6e-102 376.7 235 80.4
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 2.7e-102 375.9 240 77.5
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 2.7e-102 375.9 240 77.5
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 2.7e-102 375.9 239 79.1
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 6.0e-102 374.8 221 84.6
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 1.0e-101 374.0 343 60.9
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 1.3e-101 373.6 241 77.2
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 3.0e-101 372.5 235 78.3
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 3.0e-101 372.5 243 77.8
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 6.6e-101 371.3 240 76.7
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 6.6e-101 371.3 236 78.0
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 6.6e-101 371.3 236 78.0
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 6.6e-101 371.3 243 78.2
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 1.1e-100 370.5 240 77.5
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 1.5e-100 370.2 234 78.2
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 1.9e-100 369.8 240 75.8
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 1.9e-100 369.8 240 76.7
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 2.5e-100 369.4 243 77.0
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 3.3e-100 369.0 240 76.2
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 4.3e-100 368.6 240 76.2
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 5.6e-100 368.2 232 78.4
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 7.3e-100 367.9 240 77.1
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 4.7e-99 365.2 239 76.2
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 8.0e-99 364.4 239 75.3
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.1e-98 364.0 240 75.8
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 1.1e-98 364.0 237 77.2
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 1.1e-98 364.0 239 76.6
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 1.4e-98 363.6 240 77.5
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.3e-98 362.8 232 78.0
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 4.0e-98 362.1 212 85.4
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 8.9e-98 360.9 232 77.2
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 8.9e-98 360.9 243 75.3
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 2.0e-97 359.8 248 73.8
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 3.4e-97 359.0 273 68.9
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.4e-97 359.0 232 76.7
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 4.4e-97 358.6 241 74.7
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 2.9e-96 355.9 259 70.7
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 4.9e-96 355.1 239 74.5
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 4.9e-96 355.1 239 72.8
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 1.9e-95 353.2 239 75.3
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 4.1e-95 352.1 239 72.8
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 4.1e-95 352.1 231 76.2
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 7.0e-95 351.3 236 75.0
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 7.0e-95 351.3 239 74.1
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 7.0e-95 351.3 239 74.1
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 7.0e-95 351.3 239 74.1
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 9.2e-95 350.9 240 72.9
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 1.6e-94 350.1 233 73.8
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 2.1e-94 349.7 231 75.3
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 2.7e-94 349.4 239 74.1
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 3.5e-94 349.0 240 73.3
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 6.0e-94 348.2 240 74.2
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 7.8e-94 347.8 212 81.6
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 2.3e-93 346.3 233 72.5
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 6.6e-93 344.7 240 72.5
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 6.6e-93 344.7 236 72.9
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 8.6e-93 344.4 240 71.7
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 1.5e-92 343.6 232 73.7
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 1.9e-92 343.2 239 71.1
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 4.3e-92 342.0 208 81.7
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 9.5e-92 340.9 239 72.8
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 2.1e-91 339.7 239 72.0
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 2.8e-91 339.3 239 70.7
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 2.8e-91 339.3 239 70.3
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 1.1e-90 337.4 232 72.0
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.4e-90 337.0 242 71.5
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 1.8e-90 336.7 211 79.1
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.3e-90 336.3 295 61.0
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 4.0e-90 335.5 239 69.5
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 4.0e-90 335.5 246 72.8
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 1.2e-89 334.0 240 70.4
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 3.4e-89 332.4 195 85.1
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 4.4e-89 332.0 227 72.2
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 4.4e-89 332.0 245 70.6
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 7.5e-89 331.3 265 64.9
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 2.1e-86 323.2 283 60.8
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 7.3e-84 314.7 202 76.7
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 6.2e-83 311.6 198 76.8
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 3.1e-82 309.3 213 71.8
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 2.0e-81 306.6 209 72.2
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 2.9e-80 302.8 190 78.4
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 6.6e-77 291.6 239 64.0
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 1.2e-73 280.8 176 76.7
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 1.7e-69 266.9 171 77.2
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.9e-68 263.5 167 76.0
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 1.6e-67 260.4 229 54.1
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 4.8e-67 258.8 227 56.8
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 2.9e-64 249.6 146 83.6
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 3.2e-63 246.1 227 53.3
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 3.1e-58 229.6 145 77.2
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 6.4e-56 221.9 140 77.9
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 6.4e-56 221.9 140 77.9
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 6.0e-54 215.3 122 91.8
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 2.3e-53 213.4 123 90.2
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 8.2e-51 204.9 190 54.7
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 5.3e-50 202.2 135 74.1
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 1.2e-49 201.1 181 61.3
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 2.6e-49 199.9 223 45.7
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 2.6e-49 199.9 131 74.8
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 5.8e-49 198.7 126 78.6
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 5.8e-49 198.7 125 76.0
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 4.9e-48 195.7 120 80.8
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 9.3e-47 191.4 170 61.2
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 2.5e-44 183.3 118 75.4
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 1.2e-38 164.5 233 42.5
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.7e-38 163.3 129 68.2
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 7.4e-36 155.2 120 69.2
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.9e-32 143.3 100 72.0
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 8.5e-32 141.7 130 59.2
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.4e-31 141.0 121 64.5
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 7.9e-30 135.2 208 40.4
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 2.3e-29 133.7 85 71.8
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 4.8e-27 125.9 80 77.5
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 6.3e-27 125.6 106 63.2
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 5.3e-26 122.5 89 67.4
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 3.5e-25 119.8 91 64.8
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.9e-24 116.7 100 68.0
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 5.0e-24 115.9 223 33.6
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 2.0e-20 104.0 71 71.8
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 1.7e-19 100.9 190 31.6
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.2e-19 100.5 152 36.2
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 1.0e-16 91.7 170 40.0
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 1.3e-16 91.3 50 84.0
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.5e-15 87.0 62 67.7
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 8.8e-13 78.6 61 63.9
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 4.5e-09 66.2 37 81.1
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 1.5e-07 61.2 33 78.8
SHI17043 Sapria himalayana HOM05D004647 ORTHO05D005349 2.1e-06 57.4 30 83.3


User provided reference genes

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