Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p005534 Quercus lobata HOM05D006807 ORTHO05D008528 1.1e-169 599.7 287 100.0
QL10p005592 Quercus lobata HOM05D006807 ORTHO05D008528 9.2e-111 404.1 343 66.2
Haze_07288 Corylus avellana HOM05D006807 ORTHO05D008528 4.9e-96 355.1 345 59.1
FAN04G0573 Fragaria x ananassa HOM05D006807 ORTHO05D008528 1.1e-95 354.0 343 57.4
CiPaw.11G013300 Carya illinoinensis HOM05D006807 ORTHO05D008528 2.4e-95 352.8 345 58.3
Prupe.5G159400 Prunus persica HOM05D006807 ORTHO05D008528 3.2e-95 352.4 343 58.3
FAN08G1325 Fragaria x ananassa HOM05D006807 ORTHO05D008528 2.7e-94 349.4 343 56.3
RcHm_v2.0_Chr7g0191471 Rosa chinensis HOM05D006807 ORTHO05D008528 4.6e-94 348.6 343 57.4
FvH4_5g07080 Fragaria vesca HOM05D006807 ORTHO05D008528 1.3e-93 347.1 343 56.6
MD14G1165700 Malus domestica HOM05D006807 ORTHO05D008528 3.0e-93 345.9 344 57.0
FAN18G3349 Fragaria x ananassa HOM05D006807 ORTHO05D008528 5.1e-93 345.1 343 56.3
Eucgr.B00162 Eucalyptus grandis HOM05D006807 ORTHO05D008528 9.6e-92 340.9 343 56.3
CSS0019908 Camellia sinensis var. sinensis HOM05D006807 ORTHO05D008528 1.3e-91 340.5 346 55.2
PGR083G0032 Punica granatum HOM05D006807 ORTHO05D008528 8.1e-91 337.8 347 55.9
GSVIVG01007565001 Vitis vinifera HOM05D006807 ORTHO05D008528 5.3e-90 335.1 344 55.5
Atru.chr9.992 Acer truncatum HOM05D006807 ORTHO05D008528 9.0e-90 334.3 343 54.2
ClCG03G003400 Citrullus lanatus HOM05D006807 ORTHO05D008528 1.2e-89 334.0 344 56.4
MELO3C002326.2 Cucumis melo HOM05D006807 ORTHO05D008528 3.4e-89 332.4 345 56.2
Duzib205G0271 Durio zibethinus HOM05D006807 ORTHO05D008528 5.8e-89 331.6 346 54.0
Gorai.008G204300 Gossypium raimondii HOM05D006807 ORTHO05D008528 1.1e-87 327.4 346 54.3
Sed0006468 Sechium edule HOM05D006807 ORTHO05D008528 1.1e-87 327.4 344 55.2
Gohir.D12G190500 Gossypium hirsutum HOM05D006807 ORTHO05D008528 1.4e-87 327.0 346 54.3
Nitab4.5_0001360g0080 Nicotiana tabacum HOM05D006807 ORTHO05D008528 1.4e-87 327.0 347 53.9
Gohir.A12G187500 Gossypium hirsutum HOM05D006807 ORTHO05D008528 2.4e-87 326.2 346 54.3
VMungo1309G2613 Vigna mungo HOM05D006807 ORTHO05D008528 4.2e-87 325.5 345 54.8
Aqoxy3G01322 Aquilegia oxysepala HOM05D006807 ORTHO05D008528 5.4e-87 325.1 351 53.8
Sc22g0003890 Simmondsia chinensis HOM05D006807 ORTHO05D008528 9.3e-87 324.3 343 53.4
CANSAT80G1796 Cannabis sativa HOM05D006807 ORTHO05D008528 2.1e-86 323.2 346 54.0
Nitab4.5_0002531g0140 Nicotiana tabacum HOM05D006807 ORTHO05D008528 7.9e-86 321.2 354 52.3
Potri.015G088900 Populus trichocarpa HOM05D006807 ORTHO05D008528 7.9e-86 321.2 353 52.7
COL.COLO4_04554 Corchorus olitorius HOM05D006807 ORTHO05D008528 1.0e-85 320.9 347 53.0
FAN13G3089 Fragaria x ananassa HOM05D006807 ORTHO05D008528 1.3e-85 320.5 350 53.4
vmacro16698 Vaccinium macrocarpon HOM05D006807 ORTHO05D008528 1.8e-85 320.1 350 53.4
ATR0824G221 Amborella trichopoda HOM05D006807 ORTHO05D008528 3.0e-85 319.3 352 52.0
Hund18532 Selenicereus undatus HOM05D006807 ORTHO05D008528 3.9e-85 318.9 343 53.1
Solyc03g111600.4 Solanum lycopersicum HOM05D006807 ORTHO05D008528 3.9e-85 318.9 347 52.7
Peaxi162Scf00089g00837 Petunia axillaris HOM05D006807 ORTHO05D008528 6.7e-85 318.2 356 52.2
Cc04_g10630 Coffea canephora HOM05D006807 ORTHO05D008528 1.1e-84 317.4 352 52.3
Phvul.009G169800 Phaseolus vulgaris HOM05D006807 ORTHO05D008528 1.1e-84 317.4 345 53.3
Lj1g0024485 Lotus japonicus HOM05D006807 ORTHO05D008528 1.5e-84 317.0 345 53.3
Glyma.04G191800 Glycine max HOM05D006807 ORTHO05D008528 1.9e-84 316.6 345 53.9
Dinv11117 Davidia involucrata HOM05D006807 ORTHO05D008528 5.6e-84 315.1 332 55.1
Sopen03g030720 Solanum pennellii HOM05D006807 ORTHO05D008528 1.3e-83 313.9 353 52.4
Sabra15G0111700 Salix brachista HOM05D006807 ORTHO05D008528 2.8e-83 312.8 379 49.6
AUR62025746 Chenopodium quinoa HOM05D006807 ORTHO05D008528 3.7e-83 312.4 344 51.5
Lalb_Chr08g0236911 Lupinus albus HOM05D006807 ORTHO05D008528 3.7e-83 312.4 343 52.5
Ciclev10020730m.g Citrus clementina HOM05D006807 ORTHO05D008528 1.1e-82 310.8 346 53.2
Aa31LG4G17000 Aethionema arabicum HOM05D006807 ORTHO05D008528 1.4e-82 310.5 347 51.6
TAR371G0294 Trochodendron aralioides HOM05D006807 ORTHO05D008528 1.4e-82 310.5 349 53.0
TWI14G0970 Tripterygium wilfordii HOM05D006807 ORTHO05D008528 2.4e-82 309.7 353 51.0
arahy.Tifrunner.gnm1.ann1.X96BEI Arachis hypogaea HOM05D006807 ORTHO05D008528 3.1e-82 309.3 345 53.3
THA.LOC104821499 Tarenaya hassleriana HOM05D006807 ORTHO05D008528 6.9e-82 308.1 345 49.9
EL10Ac7g18054 Beta vulgaris HOM05D006807 ORTHO05D008528 1.2e-81 307.4 344 50.9
PSO170G3265 Papaver somniferum HOM05D006807 ORTHO05D008528 1.2e-81 307.4 355 50.4
AL5G27820 Arabidopsis lyrata HOM05D006807 ORTHO05D008528 1.5e-81 307.0 347 51.9
arahy.Tifrunner.gnm1.ann1.Q2B2KY Arachis hypogaea HOM05D006807 ORTHO05D008528 1.5e-81 307.0 345 53.3
Lsat_1_v5_gn_4_78300 Lactuca sativa HOM05D006807 ORTHO05D008528 1.5e-81 307.0 357 49.9
Lj9A473T62 Lonicera japonica HOM05D006807 ORTHO05D008528 2.6e-81 306.2 355 51.3
HanXRQChr09g0272791 Helianthus annuus HOM05D006807 ORTHO05D008528 4.5e-81 305.4 349 50.1
C08p23430 Brassica napus HOM05D006807 ORTHO05D008528 5.8e-81 305.1 347 51.6
BolC8t49971H Brassica oleracea HOM05D006807 ORTHO05D008528 5.8e-81 305.1 347 51.6
A06p19250 Brassica napus HOM05D006807 ORTHO05D008528 7.6e-81 304.7 345 51.3
BraA06t25009Z Brassica rapa HOM05D006807 ORTHO05D008528 7.6e-81 304.7 345 51.3
SGA_v2.0_scaffold168G38478 Striga asiatica HOM05D006807 ORTHO05D008528 9.9e-81 304.3 356 50.0
Thhalv10010480m.g Eutrema salsugineum HOM05D006807 ORTHO05D008528 1.3e-80 303.9 348 51.4
Carub.0005s1459 Capsella rubella HOM05D006807 ORTHO05D008528 1.7e-80 303.5 348 51.7
Migut.I00265 Erythranthe guttata HOM05D006807 ORTHO05D008528 1.9e-79 300.1 354 50.0
Rhsim12G0171200 Rhododendron simsii HOM05D006807 ORTHO05D008528 2.5e-79 299.7 401 46.6
Sp5g13620 Schrenkiella parvula HOM05D006807 ORTHO05D008528 2.5e-79 299.7 347 50.7
PSO478G3056 Papaver somniferum HOM05D006807 ORTHO05D008528 3.2e-79 299.3 356 50.3
MSTRG.11302 Avicennia marina HOM05D006807 ORTHO05D008528 4.2e-79 298.9 356 48.9
Nn4g22485 Nelumbo nucifera HOM05D006807 ORTHO05D008528 1.6e-78 297.0 320 53.4
PSO017G6759 Papaver somniferum HOM05D006807 ORTHO05D008528 2.1e-78 296.6 356 49.7
CARHR157170 Cardamine hirsuta HOM05D006807 ORTHO05D008528 3.5e-78 295.8 349 50.7
AT3G48425 Arabidopsis thaliana HOM05D006807 ORTHO05D008528 4.6e-78 295.4 347 50.1
unitig_32.g11163 Utricularia gibba HOM05D006807 ORTHO05D008528 6.0e-78 295.0 347 49.6
HPP92_021433 Vanilla planifolia HOM05D006807 ORTHO05D008528 3.0e-77 292.7 357 50.1
Psat5g141120 Pisum sativum HOM05D006807 ORTHO05D008528 3.9e-77 292.4 349 50.7
Medtr3g075220 Medicago truncatula HOM05D006807 ORTHO05D008528 6.7e-77 291.6 352 50.0
TPR.G38619 Trifolium pratense HOM05D006807 ORTHO05D008528 6.7e-77 291.6 347 49.6
SHI17323 Sapria himalayana HOM05D006807 ORTHO05D008528 8.7e-77 291.2 349 50.1
CDE02G3945 Ceratophyllum demersum HOM05D006807 ORTHO05D008528 1.9e-76 290.0 357 48.7
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 1.7e-72 276.9 326 48.8
Os12g0279600 Oryza sativa ssp. japonica HOM05D006807 ORTHO05D008528 1.7e-72 276.9 364 47.0
Thecc.03G121100 Theobroma cacao HOM05D006807 ORTHO05D008528 5.1e-69 265.4 272 55.5
Hma1.2p1_0014F.1_g010020 Hydrangea macrophylla HOM05D006807 ORTHO05D008528 2.5e-68 263.1 262 55.7
Hma1.2p1_0014F.1_g010010 Hydrangea macrophylla HOM05D006807 ORTHO05D008528 3.7e-67 259.2 278 53.6
Manes.14G056000 Manihot esculenta HOM05D006807 ORTHO05D008528 3.7e-67 259.2 262 55.3
PSO063G3624 Papaver somniferum HOM05D006807 ORTHO05D008528 3.1e-66 256.1 348 46.0
SMO133G0041 Selaginella moellendorffii HOM05D006807 ORTHO05D008528 1.0e-64 251.1 347 42.7
BcaB01g00811 Brassica carinata HOM05D006807 ORTHO05D008528 1.4e-61 240.7 359 45.1
Actinidia36777 Actinidia chinensis HOM05D006807 ORTHO05D008528 5.7e-60 235.3 303 45.5
Pp3c24_19470 Physcomitrium patens HOM05D006807 ORTHO05D008528 5.7e-60 235.3 346 41.6
Atru.chr9.1050 Acer truncatum HOM05D006807 ORTHO05D008528 1.7e-59 233.8 171 66.7
AUR62001264 Chenopodium quinoa HOM05D006807 ORTHO05D008528 5.3e-58 228.8 306 46.1
DCAR_023882 Daucus carota HOM05D006807 ORTHO05D008528 4.2e-55 219.2 171 62.6
Mapoly0101s0017 Marchantia polymorpha HOM05D006807 ORTHO05D008528 1.7e-48 197.2 171 56.7
TAR374G0317 Trochodendron aralioides HOM05D006807 ORTHO05D008528 7.2e-47 191.8 327 40.7
HPP92_027094 Vanilla planifolia HOM05D006807 ORTHO05D008528 2.6e-41 173.3 165 55.8
HPP92_021415 Vanilla planifolia HOM05D006807 ORTHO05D008528 1.1e-26 124.8 68 82.4
MCO03G559 Micromonas commoda HOM05D006807 ORTHO05D008528 1.4e-26 124.4 380 30.0
SEGI_26035 Sequoiadendron giganteum HOM05D006807 ORTHO05D008528 2.9e-24 116.7 69 71.0
AagrBONN_evm.TU.Sc2ySwM_344.5257 Anthoceros agrestis HOM05D006807 ORTHO05D008528 1.4e-21 107.8 121 45.5
VMungo0251G3460 Vigna mungo HOM05D006807 ORTHO05D008528 4.9e-19 99.4 108 52.8
VMungo0647G1510 Vigna mungo HOM05D006807 ORTHO05D008528 4.9e-19 99.4 109 53.2
Manes.06G114000 Manihot esculenta HOM05D006807 ORTHO05D008528 5.4e-18 95.9 57 70.2
HPP92_021414 Vanilla planifolia HOM05D006807 ORTHO05D008528 9.2e-18 95.1 46 91.3
HPP92_021416 Vanilla planifolia HOM05D006807 ORTHO05D008528 1.7e-16 90.9 121 47.1
HPP92_027095 Vanilla planifolia HOM05D006807 ORTHO05D008528 1.7e-16 90.9 121 47.1
arahy.Tifrunner.gnm1.ann1.0JE8SP Arachis hypogaea HOM05D006807 ORTHO05D008528 2.3e-16 90.5 52 76.9
Cpa.g.c45383 Carica papaya HOM05D006807 ORTHO05D008528 8.6e-16 88.6 71 62.0
HanXRQChr06g0185161 Helianthus annuus HOM05D000871 ORTHO05D011596 1.3e-11 74.7 82 50.0
Haze_26268 Corylus avellana HOM05D005620 ORTHO05D002193 1.9e-10 70.9 164 29.3
PRCOL_00002158 Prasinoderma coloniale HOM05D006807 ORTHO05D008528 1.2e-09 68.2 155 32.9
Ca_16099_v3 Cicer arietinum L. HOM05D006807 ORTHO05D008528 1.3e-08 64.7 29 93.1
CARHR136580 Cardamine hirsuta HOM05D005620 ORTHO05D002193 3.0e-08 63.5 165 28.5
Carub.0004s2376 Capsella rubella HOM05D005620 ORTHO05D002193 3.9e-08 63.2 165 28.5
BolC4t28403H Brassica oleracea HOM05D005620 ORTHO05D002193 6.6e-08 62.4 165 29.1
A04p31630 Brassica napus HOM05D005620 ORTHO05D002193 1.1e-07 61.6 165 28.5
BraA04t18621Z Brassica rapa HOM05D005620 ORTHO05D002193 1.1e-07 61.6 165 28.5
Thhalv10016487m.g Eutrema salsugineum HOM05D005620 ORTHO05D002193 1.1e-07 61.6 165 27.9
C04p69060 Brassica napus HOM05D005620 ORTHO05D002193 1.9e-07 60.8 165 27.9
SMO145G0259 Selaginella moellendorffii HOM05D005620 ORTHO05D002193 1.9e-07 60.8 165 28.5
AL4G39540 Arabidopsis lyrata HOM05D005620 ORTHO05D002193 4.3e-07 59.7 165 27.3
AT2G41460 Arabidopsis thaliana HOM05D005620 ORTHO05D002193 4.3e-07 59.7 165 27.3
COL.COLO4_21299 Corchorus olitorius HOM05D005620 ORTHO05D002193 4.3e-07 59.7 165 29.7
Potri.016G042000 Populus trichocarpa HOM05D005620 ORTHO05D002193 9.5e-07 58.5 165 28.5
MELO3C009829.2 Cucumis melo HOM05D005620 ORTHO05D002193 1.2e-06 58.2 164 28.0
Manes.09G016000 Manihot esculenta HOM05D005620 ORTHO05D002193 1.2e-06 58.2 165 29.1
AL4G39920 Arabidopsis lyrata HOM05D005620 ORTHO05D002193 1.6e-06 57.8 85 37.6
ClCG10G015520 Citrullus lanatus HOM05D005620 ORTHO05D002193 2.1e-06 57.4 164 28.7
CsaV3_3G040940 Cucumis sativus L. HOM05D005620 ORTHO05D002193 2.1e-06 57.4 164 28.0
THA.LOC104803289 Tarenaya hassleriana HOM05D002000 ORTHO05D002027 2.1e-06 57.4 165 27.3
BcaB01g03467 Brassica carinata HOM05D005620 ORTHO05D002193 2.8e-06 57.0 165 27.3
BcaC01g05336 Brassica carinata HOM05D005620 ORTHO05D002193 3.6e-06 56.6 101 33.7
BolC3t15148H Brassica oleracea HOM05D005620 ORTHO05D002193 3.6e-06 56.6 101 33.7
Cfa016753 Carpinus fangiana HOM05D005620 ORTHO05D002193 3.6e-06 56.6 165 29.7
Haze_19751 Corylus avellana HOM05D005620 ORTHO05D002193 3.6e-06 56.6 165 29.7
Cpa.g.sc120.9 Carica papaya HOM05D005620 ORTHO05D002193 4.7e-06 56.2 164 28.7
A03p23280 Brassica napus HOM05D005620 ORTHO05D002193 6.2e-06 55.8 101 32.7
C03p27780 Brassica napus HOM05D005620 ORTHO05D002193 6.2e-06 55.8 101 32.7
BraA03t11547Z Brassica rapa HOM05D005620 ORTHO05D002193 6.2e-06 55.8 101 32.7
HanXRQChr10g0298661 Helianthus annuus HOM05D005620 ORTHO05D002193 6.2e-06 55.8 165 27.3


User provided reference genes

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