Gene: AT3G48425

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G48425
  • Transcript Identifier AT3G48425.1
  • Gene Type Coding gene
  • Location Chr3 : 17931910-17934493 : positive

Gene Family Information

  • ID HOM05D006807
  • #Genes/#Species 118/89
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G48425.1
  • uniprot Q5XF07

Descriptions

  • Description DNAse I-like superfamily protein
  • Computational description DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Exodeoxyribonuclease III xth (InterPro:IPR004808); BEST Arabidopsis thaliana protein match is: apurinic endonuclease-redox protein (TAIR:AT2G41460.1); Has 5913 Blast hits to 5912 proteins in 1998 species: Archae - 119; Bacteria - 3923; Metazoa - 218; Fungi - 82; Plants - 109; Viruses - 0; Other Eukaryotes - 1462 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IEA
InterProDNA repair
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0006284
IBA
Gene Ontologybase-excision repair1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0004518
IEA
GOA Databasenuclease activity
GO:0004518
IEA
InterPronuclease activity
GO:0004528
IBA
GOA Databasephosphodiesterase I activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0008081
IBA
Gene Ontologyphosphoric diester hydrolase activity1
GO:0008311
IBA
Gene Ontologydouble-stranded DNA 3'-5' exodeoxyribonuclease activity1
GO:0003906
IBA
Gene OntologyDNA-(apurinic or apyrimidinic site) endonuclease activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus1
GO:0005730
IEA
GOA Databasenucleolus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036691 Endonuclease/exonuclease/phosphatase superfamily
IPR004808 AP endonuclease 1
IPR005135 Endonuclease/exonuclease/phosphatase
Mapman id Description
14.5.10.1 DNA damage response.base excision repair (BER).apurinic/apyrimidinic (AP) endonuclease activities.AP-endonuclease (APE1)