Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p040316 Quercus lobata HOM05D005380 ORTHO05D006601 1.5e-59 232.6 119 100.0
QL11p017903 Quercus lobata HOM05D005380 ORTHO05D006601 2.5e-54 215.3 114 96.5
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 4.3e-54 214.5 112 97.3
QL10p043084 Quercus lobata HOM05D005380 ORTHO05D006601 4.0e-52 208.0 112 93.8
QL05p013204 Quercus lobata HOM05D005380 ORTHO05D006601 1.3e-50 203.0 112 94.6
Cfa000719 Carpinus fangiana HOM05D005380 ORTHO05D006601 6.6e-47 190.7 114 81.6
FvH4_3g11790 Fragaria vesca HOM05D005380 ORTHO05D006601 1.5e-46 189.5 115 81.7
FAN21G3255 Fragaria x ananassa HOM05D005380 ORTHO05D006601 3.3e-46 188.3 115 80.9
FAN16G1170 Fragaria x ananassa HOM05D005380 ORTHO05D006601 5.6e-46 187.6 115 80.9
RcHm_v2.0_Chr5g0019211 Rosa chinensis HOM05D005380 ORTHO05D006601 2.1e-45 185.7 115 80.9
FAN25G3771 Fragaria x ananassa HOM05D005380 ORTHO05D006601 4.8e-45 184.5 115 80.9
MD10G1238900 Malus domestica HOM05D005380 ORTHO05D006601 4.8e-45 184.5 115 79.1
MD05G1259300 Malus domestica HOM05D005380 ORTHO05D006601 8.1e-45 183.7 115 79.1
Thecc.06G135400 Theobroma cacao HOM05D005380 ORTHO05D006601 2.0e-43 179.1 114 77.2
TWI09G1549 Tripterygium wilfordii HOM05D005380 ORTHO05D006601 2.6e-43 178.7 114 77.2
Atru.chr10.626 Acer truncatum HOM05D005380 ORTHO05D006601 7.6e-43 177.2 114 75.4
Atru.chr10.630_Atru.chr10.631 Acer truncatum HOM05D005380 ORTHO05D006601 7.6e-43 177.2 114 75.4
CiPaw.10G065000 Carya illinoinensis HOM05D005380 ORTHO05D006601 9.9e-43 176.8 112 76.8
Prupe.4G105500 Prunus persica HOM05D005380 ORTHO05D006601 2.2e-42 175.6 115 77.4
Ciclev10014143m.g Citrus clementina HOM05D005380 ORTHO05D006601 3.8e-42 174.9 112 72.3
COL.COLO4_30926 Corchorus olitorius HOM05D005380 ORTHO05D006601 3.8e-42 174.9 114 75.4
Potri.001G081900 Populus trichocarpa HOM05D005380 ORTHO05D006601 3.8e-42 174.9 114 74.6
Dinv01434 Davidia involucrata HOM05D005380 ORTHO05D006601 1.1e-41 173.3 112 75.0
Potri.003G148700 Populus trichocarpa HOM05D005380 ORTHO05D006601 1.9e-41 172.6 114 72.8
Duzib192G0856 Durio zibethinus HOM05D005380 ORTHO05D006601 3.2e-41 171.8 114 74.6
Gorai.011G051400 Gossypium raimondii HOM05D005380 ORTHO05D006601 9.3e-41 170.2 112 74.1
Manes.11G052180 Manihot esculenta HOM05D005380 ORTHO05D006601 9.3e-41 170.2 114 74.6
GSVIVG01013627001 Vitis vinifera HOM05D005380 ORTHO05D006601 1.2e-40 169.9 114 76.3
Eucgr.E02010 Eucalyptus grandis HOM05D005380 ORTHO05D006601 2.7e-40 168.7 114 73.7
Sabra03G0108200 Salix brachista HOM05D005380 ORTHO05D006601 2.7e-40 168.7 114 71.9
Manes.16G057200 Manihot esculenta HOM05D005380 ORTHO05D006601 7.9e-40 167.2 114 73.7
Gohir.D10G048301 Gossypium hirsutum HOM05D005380 ORTHO05D006601 1.0e-39 166.8 114 71.1
Lalb_Chr07g0194321 Lupinus albus HOM05D005380 ORTHO05D006601 3.9e-39 164.9 112 72.3
vmacro04057 Vaccinium macrocarpon HOM05D005380 ORTHO05D006601 5.1e-39 164.5 114 68.4
Haze_06032 Corylus avellana HOM05D005380 ORTHO05D006601 1.1e-38 163.3 122 70.5
Lj3g0005152 Lotus japonicus HOM05D005380 ORTHO05D006601 1.5e-38 162.9 112 70.5
arahy.Tifrunner.gnm1.ann1.GT0B0E Arachis hypogaea HOM05D005380 ORTHO05D006601 3.3e-38 161.8 112 69.6
arahy.Tifrunner.gnm1.ann1.UEF6CF Arachis hypogaea HOM05D005380 ORTHO05D006601 3.3e-38 161.8 112 69.6
CANSAT80G1059 Cannabis sativa HOM05D005380 ORTHO05D006601 3.3e-38 161.8 113 69.9
PGR083G1975 Punica granatum HOM05D005380 ORTHO05D006601 4.3e-38 161.4 114 68.4
MBI10_g16336_MAGBIO Magnolia biondii HOM05D005380 ORTHO05D006601 7.4e-38 160.6 114 70.2
TPR.G31565 Trifolium pratense HOM05D005380 ORTHO05D006601 7.4e-38 160.6 112 71.4
CSS0002209 Camellia sinensis var. sinensis HOM05D005380 ORTHO05D006601 1.3e-37 159.8 112 71.4
Ca_23214_v3 Cicer arietinum L. HOM05D005380 ORTHO05D006601 1.3e-37 159.8 112 70.5
Medtr8g012560 Medicago truncatula HOM05D005380 ORTHO05D006601 1.6e-37 159.5 112 69.6
Phvul.010G053600 Phaseolus vulgaris HOM05D005380 ORTHO05D006601 1.6e-37 159.5 112 70.5
Sc10g0009350 Simmondsia chinensis HOM05D005380 ORTHO05D006601 1.6e-37 159.5 114 67.5
Hma1.2p1_1380F.1_g279310 Hydrangea macrophylla HOM05D005380 ORTHO05D006601 2.1e-37 159.1 112 69.6
Lj1A1141T72 Lonicera japonica HOM05D005380 ORTHO05D006601 2.1e-37 159.1 112 69.6
Glyma.03G103900 Glycine max HOM05D005380 ORTHO05D006601 6.2e-37 157.5 110 70.9
Nitab4.5_0002174g0030 Nicotiana tabacum HOM05D005380 ORTHO05D006601 6.2e-37 157.5 112 68.8
VMungo0331G1684 Vigna mungo HOM05D005380 ORTHO05D006601 6.2e-37 157.5 112 68.8
PSO170G0871 Papaver somniferum HOM05D005380 ORTHO05D006601 8.1e-37 157.1 114 66.7
Peaxi162Scf00128g01143 Petunia axillaris HOM05D005380 ORTHO05D006601 8.1e-37 157.1 112 68.8
Glyma.07G119900 Glycine max HOM05D005380 ORTHO05D006601 1.1e-36 156.8 112 69.6
HanXRQChr14g0457361 Helianthus annuus HOM05D005380 ORTHO05D006601 1.4e-36 156.4 112 67.0
PSO357G0674 Papaver somniferum HOM05D005380 ORTHO05D006601 1.4e-36 156.4 114 66.7
Nitab4.5_0005179g0030 Nicotiana tabacum HOM05D005380 ORTHO05D006601 2.4e-36 155.6 112 67.9
Ah.14g085840 Amaranthus hybridus HOM05D005380 ORTHO05D006601 3.1e-36 155.2 114 68.4
Hund06739 Selenicereus undatus HOM05D005380 ORTHO05D006601 4.0e-36 154.8 112 66.1
SalBow8G2602 Salvia bowleyana HOM05D005380 ORTHO05D006601 5.3e-36 154.5 112 68.8
SalBow8G4959 Salvia bowleyana HOM05D005380 ORTHO05D006601 5.3e-36 154.5 112 68.8
Aqoxy5G03588 Aquilegia oxysepala HOM05D005380 ORTHO05D006601 1.5e-35 152.9 116 65.5
EL10Ac8g19470 Beta vulgaris HOM05D005380 ORTHO05D006601 2.0e-35 152.5 113 68.1
ClCG01G008980 Citrullus lanatus HOM05D005380 ORTHO05D006601 4.5e-35 151.4 114 62.3
AUR62042012 Chenopodium quinoa HOM05D005380 ORTHO05D006601 5.8e-35 151.0 113 67.3
THA.LOC104810347 Tarenaya hassleriana HOM05D005380 ORTHO05D006601 5.8e-35 151.0 112 66.1
MELO3C021785.2 Cucumis melo HOM05D005380 ORTHO05D006601 7.6e-35 150.6 114 61.4
CsaV3_1G046710 Cucumis sativus L. HOM05D005380 ORTHO05D006601 7.6e-35 150.6 114 62.3
BcaB07g32281 Brassica carinata HOM05D005380 ORTHO05D006601 1.3e-34 149.8 112 64.3
Sopen05g010460 Solanum pennellii HOM05D005380 ORTHO05D006601 1.7e-34 149.4 112 67.0
BcaC05g26192 Brassica carinata HOM05D005380 ORTHO05D006601 3.8e-34 148.3 112 63.4
C05p21950 Brassica napus HOM05D005380 ORTHO05D006601 3.8e-34 148.3 112 63.4
CAN.G890.49 Capsicum annuum HOM05D005380 ORTHO05D006601 3.8e-34 148.3 112 67.0
Lsat_1_v5_gn_4_38401 Lactuca sativa HOM05D005380 ORTHO05D006601 3.8e-34 148.3 112 66.1
AUR62043348 Chenopodium quinoa HOM05D005380 ORTHO05D006601 4.9e-34 147.9 113 65.5
Sed0014613 Sechium edule HOM05D005380 ORTHO05D006601 4.9e-34 147.9 114 59.6
DCAR_003768 Daucus carota HOM05D005380 ORTHO05D006601 6.5e-34 147.5 112 65.2
AL1G36400 Arabidopsis lyrata HOM05D005380 ORTHO05D006601 8.4e-34 147.1 112 62.5
BraA09t39678Z Brassica rapa HOM05D005380 ORTHO05D006601 1.1e-33 146.7 112 63.4
BolC5t30892H Brassica oleracea HOM05D003679 ORTHO05D004265 1.4e-33 146.4 112 62.5
A09p41900 Brassica napus HOM05D005380 ORTHO05D006601 1.9e-33 146.0 112 63.4
CDE02G1822 Ceratophyllum demersum HOM05D005380 ORTHO05D006601 2.5e-33 145.6 112 63.4
CARHR023210 Cardamine hirsuta HOM05D005380 ORTHO05D006601 4.2e-33 144.8 112 61.6
Thhalv10006692m.g Eutrema salsugineum HOM05D005380 ORTHO05D006601 5.5e-33 144.4 112 60.7
AT1G22860 Arabidopsis thaliana HOM05D005380 ORTHO05D006601 7.1e-33 144.1 112 60.7
Psat4g204440 Pisum sativum HOM05D005380 ORTHO05D006601 7.1e-33 144.1 111 68.5
MSTRG.12176 Avicennia marina HOM05D005380 ORTHO05D006601 9.3e-33 143.7 110 67.3
Carub.0001s2236 Capsella rubella HOM05D005380 ORTHO05D006601 2.1e-32 142.5 112 60.7
CDE04G2683 Ceratophyllum demersum HOM05D005380 ORTHO05D006601 3.5e-32 141.7 112 61.6
Oeu000486.1 Olea europaea HOM05D005380 ORTHO05D006601 3.5e-32 141.7 112 64.3
Sp1g20340 Schrenkiella parvula HOM05D005380 ORTHO05D006601 4.6e-32 141.4 112 60.7
ECA247G3537 Erigeron canadensis HOM05D005380 ORTHO05D006601 1.3e-31 139.8 112 62.5
Rhsim13G0198600 Rhododendron simsii HOM05D005380 ORTHO05D006601 1.8e-31 139.4 112 60.7
Aa31LG7G6850 Aethionema arabicum HOM05D005380 ORTHO05D006601 2.3e-31 139.0 114 58.8
Migut.M01950 Erythranthe guttata HOM05D005380 ORTHO05D006601 8.7e-31 137.1 112 62.5
HPP92_023728 Vanilla planifolia HOM05D005380 ORTHO05D006601 3.3e-30 135.2 112 55.4
Cc09_g06540 Coffea canephora HOM05D005380 ORTHO05D006601 4.3e-30 134.8 113 62.8
ECA234G0325 Erigeron canadensis HOM05D005380 ORTHO05D006601 7.4e-30 134.0 112 59.8
TAR365G0677 Trochodendron aralioides HOM05D005380 ORTHO05D006601 7.4e-30 134.0 89 74.2
SGA_v2.0_scaffold223G42899 Striga asiatica HOM05D005380 ORTHO05D006601 1.4e-28 129.8 112 56.2
ATR0743G092 Amborella trichopoda HOM05D005380 ORTHO05D006601 1.2e-27 126.7 115 55.7
Os05g0104100 Oryza sativa ssp. japonica HOM05D005380 ORTHO05D006601 1.9e-25 119.4 113 52.2
Zm00001eb267510 Zea mays HOM05D005380 ORTHO05D006601 6.1e-24 114.4 113 52.2
Nn1g01426 Nelumbo nucifera HOM05D005380 ORTHO05D006601 7.9e-24 114.0 68 79.4
CSS0038991 Camellia sinensis var. sinensis HOM05D005380 ORTHO05D006601 1.1e-22 110.2 67 79.1
CSS0007558 Camellia sinensis var. sinensis HOM05D005380 ORTHO05D006601 7.4e-22 107.5 78 69.2
Solyc05g015210.4 Solanum lycopersicum HOM05D005380 ORTHO05D006601 1.8e-20 102.8 66 74.2
Duzib235G1486 Durio zibethinus HOM05D005380 ORTHO05D006601 2.4e-20 102.4 65 76.9
SEGI_33229 Sequoiadendron giganteum HOM05D005380 ORTHO05D006601 3.4e-19 98.6 116 50.9
Mapoly0029s0138 Marchantia polymorpha HOM05D005380 ORTHO05D006601 1.0e-18 97.1 114 46.5
Pp3c6_25240 Physcomitrium patens HOM05D005380 ORTHO05D006601 7.2e-17 90.9 113 41.6
BcaNung06594 Brassica carinata HOM05D005380 ORTHO05D006601 1.6e-16 89.7 88 53.4
QL03p035653 Quercus lobata HOM05D005380 ORTHO05D006601 2.7e-16 89.0 46 95.7
SMO146G0159 Selaginella moellendorffii HOM05D005380 ORTHO05D006601 5.3e-12 74.7 113 36.3
AagrBONN_evm.TU.Sc2ySwM_362.853 Anthoceros agrestis HOM05D005380 ORTHO05D006601 1.7e-10 69.7 114 36.8
unitig_747.g21990 Utricularia gibba HOM05D005380 ORTHO05D006601 2.3e-07 59.3 70 52.9


User provided reference genes

Program Settings