Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 2.0e-145 519.2 287 100.0
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 9.9e-113 410.6 290 73.4
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 1.6e-110 403.3 234 83.3
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 4.3e-108 395.2 287 76.0
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.2e-107 393.7 288 69.4
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 4.7e-107 391.7 289 69.9
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 1.1e-106 390.6 295 76.9
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 1.1e-106 390.6 295 76.9
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 1.4e-106 390.2 290 68.6
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 6.8e-106 387.9 287 68.3
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 8.9e-106 387.5 277 73.6
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 1.5e-105 386.7 288 68.4
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 2.2e-104 382.9 286 69.9
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 3.8e-104 382.1 289 65.7
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.9e-103 379.8 289 65.7
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.4e-103 379.4 289 65.4
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 2.4e-103 379.4 286 72.0
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 5.4e-103 378.3 289 67.1
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 7.1e-103 377.9 288 71.2
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 2.7e-102 375.9 287 69.0
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 3.5e-102 375.6 273 71.1
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 7.8e-102 374.4 289 72.3
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 1.3e-101 373.6 293 66.6
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.0e-101 372.5 241 73.4
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 6.6e-101 371.3 289 65.7
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 1.1e-100 370.5 286 65.7
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 1.5e-100 370.2 292 67.1
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 2.5e-100 369.4 290 66.9
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 3.3e-100 369.0 288 72.9
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 5.6e-100 368.2 289 64.0
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 5.6e-100 368.2 286 65.7
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.2e-99 367.1 289 65.7
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.2e-99 367.1 289 65.7
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 3.6e-99 365.5 318 61.9
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 6.2e-99 364.8 300 74.7
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.1e-98 364.0 284 72.2
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 4.0e-98 362.1 289 72.7
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 4.0e-98 362.1 288 70.8
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 5.3e-98 361.7 287 65.2
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 1.5e-97 360.1 291 63.6
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 2.6e-97 359.4 287 63.4
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 3.4e-97 359.0 302 62.3
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 2.9e-96 355.9 290 69.0
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 3.8e-96 355.5 288 70.1
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 1.1e-95 354.0 290 62.1
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 1.1e-95 354.0 289 63.0
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 1.9e-95 353.2 287 62.7
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 3.2e-95 352.4 241 70.1
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 3.2e-95 352.4 289 68.2
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 5.4e-95 351.7 293 70.0
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 7.1e-95 351.3 287 62.7
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 7.1e-95 351.3 276 75.0
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 7.1e-95 351.3 287 62.4
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 2.1e-94 349.7 287 61.3
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 2.7e-94 349.4 234 70.9
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 3.5e-94 349.0 287 63.4
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 6.0e-94 348.2 295 61.0
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 3.0e-93 345.9 247 70.0
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 3.9e-93 345.5 292 62.3
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 6.6e-93 344.7 295 63.7
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 8.7e-93 344.4 257 68.1
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 1.1e-92 344.0 294 59.5
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.1e-92 344.0 263 67.3
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 1.1e-92 344.0 290 62.4
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 1.5e-92 343.6 259 67.6
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 1.9e-92 343.2 344 53.8
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 2.5e-92 342.8 286 59.8
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 4.3e-92 342.0 286 60.8
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 4.3e-92 342.0 263 65.4
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 4.3e-92 342.0 274 66.4
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 7.3e-92 341.3 294 59.5
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 1.3e-91 340.5 291 60.5
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 1.3e-91 340.5 244 67.2
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.1e-91 339.7 260 64.2
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 2.8e-91 339.3 294 58.5
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 2.8e-91 339.3 291 60.1
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 4.8e-91 338.6 291 59.8
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 6.2e-91 338.2 295 58.6
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 1.1e-90 337.4 291 59.5
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 1.1e-90 337.4 291 59.5
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 1.1e-90 337.4 287 61.7
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 3.1e-90 335.9 291 59.8
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 9.9e-89 330.9 284 61.6
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 8.4e-88 327.8 276 62.7
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 2.4e-87 326.2 234 65.0
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 4.2e-87 325.5 287 57.1
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 5.4e-87 325.1 204 75.5
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 5.4e-87 325.1 287 59.2
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 7.1e-87 324.7 293 58.7
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 7.1e-87 324.7 316 55.4
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 7.1e-87 324.7 286 57.7
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 9.3e-87 324.3 282 61.3
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 1.2e-86 323.9 289 57.4
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 2.1e-86 323.2 327 53.8
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 7.9e-86 321.2 261 62.1
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 7.9e-86 321.2 288 62.5
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 1.4e-82 310.5 206 71.4
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 2.0e-81 306.6 211 69.2
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 5.5e-79 298.5 241 63.5
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 7.9e-78 294.7 294 54.8
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 1.0e-77 294.3 223 67.7
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 1.5e-76 290.4 286 53.5
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 5.6e-76 288.5 281 54.4
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 9.6e-76 287.7 276 56.2
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.2e-73 280.8 222 65.8
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 4.2e-71 272.3 225 63.6
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 1.1e-66 257.7 255 55.3
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 1.0e-64 251.1 279 50.5
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 3.9e-61 239.2 201 69.7
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 2.2e-59 233.4 155 71.6
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 2.8e-59 233.0 178 68.5
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 3.1e-58 229.6 188 58.5
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 4.5e-57 225.7 232 61.6
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 8.5e-56 221.5 149 74.5
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 5.5e-55 218.8 155 71.0
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 1.2e-54 217.6 201 57.2
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.6e-54 216.1 138 75.4
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 7.4e-52 208.4 238 48.3
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 3.7e-51 206.1 219 46.6
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 3.7e-51 206.1 282 43.3
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 6.3e-51 205.3 243 42.0
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 1.3e-48 197.6 130 76.2
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 6.5e-48 195.3 268 45.1
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 1.0e-45 188.0 121 71.1
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 2.2e-43 180.3 207 49.8
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 3.7e-43 179.5 184 49.5
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 4.1e-42 176.0 106 77.4
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 9.1e-42 174.9 170 55.9
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 2.6e-41 173.3 118 69.5
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 7.7e-41 171.8 201 49.8
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 5.0e-32 142.5 296 33.8
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 5.5e-31 139.0 96 65.6
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 2.6e-28 130.2 84 77.4
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 2.3e-24 117.1 218 36.2
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 2.1e-22 110.5 200 37.5
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 3.5e-17 93.2 140 41.4
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 5.6e-15 85.9 199 29.6
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 3.6e-14 83.2 248 27.8
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 9.5e-07 58.5 84 66.7


User provided reference genes

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