Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 1.3e-147 526.6 303 100.0
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 3.2e-61 239.6 223 64.1
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.1e-58 231.1 197 66.0
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.5e-58 230.7 214 61.7
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 1.5e-58 230.7 214 61.7
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 1.9e-58 230.3 237 56.5
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 3.3e-58 229.6 214 61.2
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 4.3e-58 229.2 210 61.9
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 9.6e-58 228.0 223 60.1
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 1.2e-57 227.6 223 60.1
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 2.8e-57 226.5 223 59.2
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 2.8e-57 226.5 197 64.0
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 4.7e-57 225.7 195 65.1
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 4.7e-57 225.7 214 60.7
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 6.2e-57 225.3 214 59.8
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 6.2e-57 225.3 214 60.3
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 6.2e-57 225.3 214 60.3
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 8.1e-57 224.9 214 60.3
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 8.1e-57 224.9 214 60.3
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 8.1e-57 224.9 214 60.3
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 1.1e-56 224.6 214 59.8
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 1.1e-56 224.6 214 59.8
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 1.1e-56 224.6 214 59.8
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 1.1e-56 224.6 214 60.3
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.4e-56 224.2 214 59.8
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 4.0e-56 222.6 214 60.3
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 6.9e-56 221.9 237 54.9
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 6.9e-56 221.9 214 60.3
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 1.2e-55 221.1 214 59.8
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 1.2e-55 221.1 237 54.4
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 1.5e-55 220.7 214 58.9
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 1.5e-55 220.7 227 56.4
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 1.5e-55 220.7 214 59.8
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.5e-55 220.7 197 62.9
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.5e-55 220.7 197 62.9
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 3.4e-55 219.5 246 53.7
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 7.6e-55 218.4 214 58.4
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 7.6e-55 218.4 216 59.7
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 9.9e-55 218.0 223 58.3
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 1.3e-54 217.6 195 62.6
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 1.3e-54 217.6 223 57.4
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 1.3e-54 217.6 197 61.4
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 1.3e-54 217.6 199 60.8
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 2.2e-54 216.9 214 57.5
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 2.2e-54 216.9 223 58.7
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 2.2e-54 216.9 197 62.9
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 2.2e-54 216.9 214 58.4
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 3.8e-54 216.1 214 57.5
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 4.9e-54 215.7 214 57.5
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 4.9e-54 215.7 214 57.5
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 1.1e-53 214.5 223 55.2
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 1.1e-53 214.5 214 57.0
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 1.1e-53 214.5 214 57.0
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 1.1e-53 214.5 214 57.0
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.4e-53 214.2 214 57.5
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 1.9e-53 213.8 214 57.9
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 1.9e-53 213.8 214 57.0
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.9e-53 213.8 230 54.8
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 2.4e-53 213.4 214 57.0
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 2.4e-53 213.4 214 56.5
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 4.2e-53 212.6 214 56.1
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 4.2e-53 212.6 214 57.9
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 5.4e-53 212.2 214 58.9
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 7.1e-53 211.8 223 56.5
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 7.1e-53 211.8 197 60.4
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 7.1e-53 211.8 197 60.9
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 7.1e-53 211.8 197 60.9
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 7.1e-53 211.8 197 60.9
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.2e-52 211.1 197 60.4
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.2e-52 211.1 223 55.2
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 1.6e-52 210.7 197 59.9
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 2.1e-52 210.3 214 56.5
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 2.1e-52 210.3 237 54.0
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 2.1e-52 210.3 214 56.5
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 2.7e-52 209.9 215 56.7
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 3.5e-52 209.5 227 55.1
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 3.5e-52 209.5 227 55.1
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 4.6e-52 209.1 214 57.5
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 6.0e-52 208.8 198 58.6
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 7.8e-52 208.4 222 55.4
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 1.3e-51 207.6 240 53.3
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.3e-51 207.6 237 52.7
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 2.3e-51 206.8 214 55.1
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 2.3e-51 206.8 214 53.7
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 5.1e-51 205.7 237 52.7
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 5.1e-51 205.7 197 59.4
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 5.1e-51 205.7 246 52.0
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 5.1e-51 205.7 246 51.6
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 6.6e-51 205.3 197 58.4
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 6.6e-51 205.3 223 54.3
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 2.5e-50 203.4 214 56.1
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 2.5e-50 203.4 247 52.2
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 2.5e-50 203.4 167 69.5
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 4.3e-50 202.6 214 54.7
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 4.3e-50 202.6 221 54.8
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 7.3e-50 201.8 223 56.1
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 1.3e-49 201.1 214 55.1
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 4.8e-49 199.1 197 56.9
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 8.1e-49 198.4 226 52.7
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 8.1e-49 198.4 214 54.2
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 1.8e-48 197.2 237 50.6
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 3.4e-47 193.0 237 48.9
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 4.5e-47 192.6 237 49.4
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 9.9e-47 191.4 214 52.8
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 8.4e-46 188.3 217 50.2
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 1.1e-45 188.0 214 50.0
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 1.1e-45 188.0 210 51.0
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 4.2e-45 186.0 214 50.0
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 1.3e-38 164.5 203 46.8
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 3.2e-37 159.8 213 46.0
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 3.5e-36 156.4 223 42.2
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 3.5e-36 156.4 223 42.2
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 7.4e-34 148.7 217 41.5
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 1.3e-33 147.9 215 40.5
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 2.1e-33 147.1 169 47.9
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 7.6e-31 138.7 125 60.8
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 4.9e-30 136.0 188 44.1
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.1e-28 130.6 138 53.6
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 3.5e-28 129.8 119 58.0
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 6.7e-27 125.6 102 65.7
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.1e-26 124.8 84 76.2
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 1.9e-26 124.0 125 55.2
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 3.7e-25 119.8 101 56.4
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 4.1e-24 116.3 203 35.5
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 5.9e-23 112.5 169 45.0
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 2.2e-22 110.5 83 66.3
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.9e-22 110.2 68 80.9
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 7.2e-21 105.5 231 32.9
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 7.9e-20 102.1 94 60.6
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 3.0e-19 100.1 125 49.6
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 4.1e-16 89.7 118 47.5
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 2.7e-12 77.0 40 97.5
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.4e-11 74.7 110 42.7
QL07p030432 Quercus lobata HOM05D000442 ORTHO05D001242 3.0e-11 73.6 71 64.8
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 2.6e-10 70.5 45 77.8
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 2.6e-10 70.5 241 27.0
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 8.5e-06 55.5 34 79.4


User provided reference genes

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