Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1349.0 704 100.0
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1256.9 705 92.6
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1241.5 697 92.1
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1226.5 705 89.8
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1226.1 698 91.7
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1224.2 699 90.7
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1218.8 705 88.9
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1218.8 704 88.9
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1218.0 701 89.9
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1211.8 705 89.4
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1209.1 705 88.7
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1204.9 705 88.5
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1204.9 699 88.7
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1202.6 705 87.8
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1201.8 699 89.1
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1200.3 692 89.7
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1198.0 699 88.7
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1198.0 697 88.7
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1197.2 705 87.7
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1196.4 704 88.4
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1194.9 705 87.5
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1193.7 704 87.8
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1190.6 705 87.5
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1189.1 700 87.4
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1187.9 685 89.1
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1187.9 705 87.2
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1186.8 685 88.9
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1186.4 685 88.9
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1186.0 685 89.2
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1182.9 705 87.1
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1180.2 685 89.1
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1177.9 707 86.7
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1175.6 707 86.7
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1175.2 684 88.3
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1175.2 684 88.3
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1175.2 684 88.3
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1174.5 701 86.2
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1171.4 684 87.0
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1166.8 703 86.6
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1166.0 691 87.6
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1163.7 685 87.9
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1161.7 710 85.2
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1161.0 683 86.4
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1159.8 703 84.8
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1159.4 711 85.5
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1156.7 721 83.9
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1156.4 733 82.3
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1154.8 691 87.4
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1154.0 684 87.0
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1153.3 692 86.3
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1152.9 704 85.7
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1152.1 684 86.8
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1151.3 698 85.7
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1151.0 684 86.8
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1150.6 727 82.5
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1150.2 683 85.8
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1148.7 700 83.4
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1148.7 705 83.3
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1147.9 700 83.3
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1147.9 700 83.3
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1147.1 722 83.8
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1147.1 693 86.3
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1146.7 700 83.1
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1146.0 695 83.6
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1146.0 695 83.6
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1143.3 700 83.0
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1143.3 700 83.0
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1142.1 700 83.0
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1141.3 701 83.2
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1140.6 722 81.6
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1140.2 700 82.7
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1139.8 707 85.3
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1139.0 704 85.1
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1137.9 700 82.6
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1137.9 695 83.3
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1131.3 690 83.6
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1122.5 685 84.5
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1120.9 698 83.2
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1119.4 667 85.3
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1119.4 700 81.7
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1117.4 687 82.5
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1116.7 685 83.4
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1116.7 696 81.6
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1114.0 763 76.9
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1112.1 693 82.4
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1107.8 685 82.9
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1105.9 741 77.7
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1099.7 685 82.9
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1092.0 696 80.6
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1087.0 704 80.4
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 0.0e+00 1086.6 686 80.5
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 0.0e+00 1085.1 747 76.0
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 0.0e+00 1075.5 679 81.1
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 2.4e-309 1065.1 697 78.8
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 9.0e-309 1063.1 741 76.1
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.6e-308 1061.6 665 82.9
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 9.6e-303 1043.1 686 77.7
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 4.5e-300 1034.2 705 75.9
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 4.3e-295 1017.7 735 71.8
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 9.7e-287 989.9 631 80.0
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 4.5e-284 981.1 630 82.4
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 4.2e-282 974.5 683 77.9
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 2.5e-279 965.3 590 83.6
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 3.2e-274 948.3 688 69.3
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 3.2e-274 948.3 688 69.3
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.1e-271 939.9 583 82.0
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 3.3e-271 938.3 681 68.7
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 2.1e-265 919.1 694 67.9
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 3.3e-263 911.8 690 67.5
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 5.0e-259 897.9 592 79.1
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 1.2e-257 893.3 565 79.6
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.0e-256 890.2 552 82.6
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 4.0e-256 888.3 515 88.3
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 1.3e-251 873.2 673 69.7
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.0e-240 837.0 497 86.7
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 7.3e-226 787.7 679 59.4
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 1.6e-217 760.0 681 57.1
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.7e-203 713.4 448 85.0
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 5.3e-200 701.8 422 83.9
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 7.0e-152 542.0 733 42.4
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 3.8e-150 536.2 328 80.2
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 2.4e-144 516.9 756 38.8
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 1.0e-131 474.9 279 85.7
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 1.8e-128 464.2 268 89.9
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 3.0e-123 446.8 272 83.8
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 3.5e-119 433.3 367 60.8
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 4.1e-112 409.8 744 35.5
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 5.6e-109 399.4 261 80.5
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.8e-108 397.1 236 86.0
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 6.2e-108 396.0 233 84.5
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 3.1e-107 393.7 252 79.0
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 4.6e-103 379.8 253 79.8
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 6.0e-79 299.7 182 81.9
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 8.1e-76 289.3 193 82.4
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 2.4e-75 287.7 214 69.6
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.9e-72 278.1 148 89.2
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.0e-65 255.8 195 69.2
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.5e-61 241.9 192 72.9
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 5.7e-61 240.0 180 76.7
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 2.1e-60 238.0 158 65.2
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 6.2e-60 236.5 223 64.1
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 2.5e-56 224.6 156 74.4
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 4.6e-55 220.3 166 73.5
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 4.2e-48 197.2 122 82.8
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 3.6e-47 194.1 113 88.5
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.1e-45 189.1 489 28.4
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 2.0e-42 178.3 111 86.5
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 1.3e-41 175.6 103 85.4
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.5e-37 162.2 111 73.0
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 6.1e-31 140.2 100 73.0
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 4.0e-30 137.5 100 71.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 4.0e-30 137.5 100 71.0
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.7e-28 132.1 151 51.7
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 3.5e-26 124.4 74 87.8
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 7.2e-24 116.7 70 85.7
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 3.6e-23 114.4 120 55.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 6.8e-22 110.2 81 74.1
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 4.4e-21 107.5 63 81.0
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.1e-19 102.8 57 86.0
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 1.4e-19 102.4 69 69.6
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 3.1e-19 101.3 59 83.1
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 4.1e-19 100.9 77 67.5
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.6e-15 89.0 93 58.1
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 1.4e-14 85.9 65 70.8
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 7.5e-13 80.1 78 53.8
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 6.3e-12 77.0 40 97.5
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 2.4e-11 75.1 51 76.5
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.7e-10 71.6 39 89.7
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 8.6e-09 66.6 64 62.5


User provided reference genes

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